RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 DDX49Q9Y6V7 483 aaKnown RBP11.81□□□□□ -0.52
USP3-219ENST00000561326 OTOFQ9HC10 1997 aa11.81□□□□□ -0.52
USP3-219ENST00000561326 CCDC194A0A1B0GVG4 234 aa11.8□□□□□ -0.52
USP3-219ENST00000561326 TRAPPC10P48553 1259 aa11.8□□□□□ -0.52
USP3-219ENST00000561326 ADCY7P51828 1080 aa11.8□□□□□ -0.52
USP3-219ENST00000561326 UBE2HP62256 183 aa11.8□□□□□ -0.52
USP3-219ENST00000561326 FKBP1BP68106 108 aa11.8□□□□□ -0.52
USP3-219ENST00000561326 PPATQ06203 517 aa11.8□□□□□ -0.52
USP3-219ENST00000561326 NR5A1Q13285 461 aa11.8□□□□□ -0.52
USP3-219ENST00000561326 STK38Q15208 465 aa11.8□□□□□ -0.52
USP3-219ENST00000561326 ANO1Q5XXA6 986 aa11.8□□□□□ -0.52
USP3-219ENST00000561326 DLK2Q6UY11 383 aa11.8□□□□□ -0.52
USP3-219ENST00000561326 KRT25Q7Z3Z0 450 aa11.8□□□□□ -0.52
USP3-219ENST00000561326 JMYQ8N9B5 988 aa11.8□□□□□ -0.52
USP3-219ENST00000561326 KCNG4Q8TDN1 519 aa11.8□□□□□ -0.52
USP3-219ENST00000561326 OXER1Q8TDS5 423 aa11.8□□□□□ -0.52
USP3-219ENST00000561326 LEO1Q8WVC0 666 aaPredicted RBP11.8□□□□□ -0.52
USP3-219ENST00000561326 CUL5Q93034 780 aa11.8□□□□□ -0.52
USP3-219ENST00000561326 KIFC2Q96AC6 838 aa11.8□□□□□ -0.52
USP3-219ENST00000561326 SLC10A4Q96EP9 437 aa11.8□□□□□ -0.52
USP3-219ENST00000561326 CHAMP1Q96JM3 812 aa11.8□□□□□ -0.52
USP3-219ENST00000561326 C12orf42Q96LP6 360 aa11.8□□□□□ -0.52
USP3-219ENST00000561326 USP28Q96RU2 1077 aa11.8□□□□□ -0.52
USP3-219ENST00000561326 TANGO6Q9C0B7 1094 aa11.8□□□□□ -0.52
USP3-219ENST00000561326 PSTPIP2Q9H939 334 aa11.8□□□□□ -0.52
USP3-219ENST00000561326 GDPD2Q9HCC8 539 aa11.8□□□□□ -0.52
USP3-219ENST00000561326 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.8□□□□□ -0.52
USP3-219ENST00000561326 SNCAIPQ9Y6H5 919 aa11.8□□□□□ -0.52
USP3-219ENST00000561326 PARP14Q460N5 1801 aa11.8□□□□□ -0.52
USP3-219ENST00000561326 UTRNP46939 3433 aa11.8□□□□□ -0.52
USP3-219ENST00000561326 CXCL11O14625 94 aa11.79□□□□□ -0.52
USP3-219ENST00000561326 ZBED4O75132 1171 aa11.79□□□□□ -0.52
USP3-219ENST00000561326 BMP15O95972 392 aa11.79□□□□□ -0.52
USP3-219ENST00000561326 NASPP49321 788 aaPredicted RBP11.79□□□□□ -0.52
USP3-219ENST00000561326 HMGCS2P54868 508 aa11.79□□□□□ -0.52
USP3-219ENST00000561326 NPY5RQ15761 445 aa11.79□□□□□ -0.52
USP3-219ENST00000561326 SH3D19Q5HYK7 790 aa11.79□□□□□ -0.52
USP3-219ENST00000561326 REXO1Q8N1G1 1221 aaKnown RBP11.79□□□□□ -0.52
USP3-219ENST00000561326 C2orf69Q8N8R5 385 aa11.79□□□□□ -0.52
USP3-219ENST00000561326 SLF1Q9BQI6 1058 aa11.79□□□□□ -0.52
USP3-219ENST00000561326 RPAP3Q9H6T3 665 aaPredicted RBP11.79□□□□□ -0.52
USP3-219ENST00000561326 ELP3Q9H9T3 547 aa11.79□□□□□ -0.52
USP3-219ENST00000561326 RIC8AQ9NPQ8 531 aa11.79□□□□□ -0.52
USP3-219ENST00000561326 MYH7BA7E2Y1 1941 aa11.79□□□□□ -0.52
USP3-219ENST00000561326 PAPPA2Q9BXP8 1791 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 USP17L15C9J2P7 530 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 USP17L13C9JLJ4 530 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 USP17L11C9JVI0 530 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 USP17L18D6R9N7 530 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 USP17L22D6RA61 530 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 USP17L17D6RBQ6 530 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 USP17L19D6RCP7 530 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 USP17L20D6RJB6 530 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 SPTLC2O15270 562 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 FLOT1O75955 427 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 POTEIP0CG38 1075 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 POTEJP0CG39 1038 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 VCAM1P19320 739 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 ME1P48163 572 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 USP17L24Q0WX57 530 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 COG2Q14746 738 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 SLC39A14Q15043 492 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 NONOQ15233 471 aaKnown RBP eCLIP11.78□□□□□ -0.52
USP3-219ENST00000561326 KLHL40Q2TBA0 621 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 LDLRAD1Q5T700 205 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 CHADLQ6NUI6 762 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 TYW1BQ6NUM6 668 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 SAMD1Q6SPF0 538 aaPredicted RBP11.78□□□□□ -0.52
USP3-219ENST00000561326 PIK3AP1Q6ZUJ8 805 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 LINC00301Q8NCQ3 95 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 ZNF526Q8TF50 670 aaPredicted RBP11.78□□□□□ -0.52
USP3-219ENST00000561326 TNFRSF25Q93038 417 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 SHISA4Q96DD7 197 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 RANBP17Q9H2T7 1088 aaKnown RBP11.78□□□□□ -0.52
USP3-219ENST00000561326 ZNF408Q9H9D4 720 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 NMRK2Q9NPI5 230 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 HOXC10Q9NYD6 342 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 PCDHA6Q9UN73 950 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 MRPL11Q9Y3B7 192 aaKnown RBP11.78□□□□□ -0.52
USP3-219ENST00000561326 PCDHA8Q9Y5H6 950 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 CLIC4Q9Y696 253 aa11.78□□□□□ -0.52
USP3-219ENST00000561326 COL11A1P12107 1806 aaPredicted RBP11.78□□□□□ -0.52
USP3-219ENST00000561326 SPDYE5A6NIY4 337 aa11.77□□□□□ -0.53
USP3-219ENST00000561326 M0R2N6 131 aa11.77□□□□□ -0.53
USP3-219ENST00000561326 PPP1R11O60927 126 aaPredicted RBP11.77□□□□□ -0.53
USP3-219ENST00000561326 FOSP01100 380 aaPredicted RBP11.77□□□□□ -0.53
USP3-219ENST00000561326 ATP2B1P20020 1258 aa11.77□□□□□ -0.53
USP3-219ENST00000561326 PPIL2Q13356 520 aa11.77□□□□□ -0.53
USP3-219ENST00000561326 USH1GQ495M9 461 aa11.77□□□□□ -0.53
USP3-219ENST00000561326 FASTKD5Q7L8L6 764 aaKnown RBP11.77□□□□□ -0.53
USP3-219ENST00000561326 PROCA1Q8NCQ7 364 aaPredicted RBP11.77□□□□□ -0.53
USP3-219ENST00000561326 SYAP1Q96A49 352 aaPredicted RBP11.77□□□□□ -0.53
USP3-219ENST00000561326 OTUD5Q96G74 571 aa11.77□□□□□ -0.53
USP3-219ENST00000561326 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.77□□□□□ -0.53
USP3-219ENST00000561326 BIN2Q9UBW5 565 aaPredicted RBP11.77□□□□□ -0.53
USP3-219ENST00000561326 PPP1R9AQ9ULJ8 1098 aa11.77□□□□□ -0.53
USP3-219ENST00000561326 ABCB11O95342 1321 aa11.77□□□□□ -0.53
USP3-219ENST00000561326 TRAF5O00463 557 aa11.76□□□□□ -0.53
USP3-219ENST00000561326 PPP6R2O75170 966 aa11.76□□□□□ -0.53
USP3-219ENST00000561326 ICAM1P05362 532 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms