RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 REV1Q9UBZ9 1251 aa8.04□□□□□ -1.12
LRRC28-220ENST00000561253 ADAM30Q9UKF2 790 aa8.04□□□□□ -1.12
LRRC28-220ENST00000561253 ZNRF3Q9ULT6 936 aa8.04□□□□□ -1.12
LRRC28-220ENST00000561253 KIF24Q5T7B8 1368 aa8.04□□□□□ -1.12
LRRC28-220ENST00000561253 PARD3Q8TEW0 1356 aa8.04□□□□□ -1.12
LRRC28-220ENST00000561253 COL5A2P05997 1499 aaPredicted RBP8.04□□□□□ -1.12
LRRC28-220ENST00000561253 COL14A1Q05707 1796 aaKnown RBP8.04□□□□□ -1.12
LRRC28-220ENST00000561253 RTL1A6NKG5 1358 aa8.03□□□□□ -1.12
LRRC28-220ENST00000561253 INSRP06213 1382 aa8.03□□□□□ -1.12
LRRC28-220ENST00000561253 NEFMP07197 916 aa8.03□□□□□ -1.12
LRRC28-220ENST00000561253 EIF6P56537 245 aaKnown RBP8.03□□□□□ -1.12
LRRC28-220ENST00000561253 RASSF7Q02833 373 aa8.03□□□□□ -1.12
LRRC28-220ENST00000561253 KCNMA1Q12791 1236 aa8.03□□□□□ -1.12
LRRC28-220ENST00000561253 SMYD4Q8IYR2 804 aaPredicted RBP8.03□□□□□ -1.12
LRRC28-220ENST00000561253 DZIP1LQ8IYY4 767 aaKnown RBP8.03□□□□□ -1.12
LRRC28-220ENST00000561253 IP6K1Q92551 441 aa8.03□□□□□ -1.12
LRRC28-220ENST00000561253 ISL2Q96A47 359 aa8.03□□□□□ -1.12
LRRC28-220ENST00000561253 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.03□□□□□ -1.12
LRRC28-220ENST00000561253 NWD2Q9ULI1 1742 aa8.03□□□□□ -1.12
LRRC28-220ENST00000561253 PLCH1Q4KWH8 1693 aa8.02□□□□□ -1.13
LRRC28-220ENST00000561253 STK10O94804 968 aaKnown RBP8.02□□□□□ -1.13
LRRC28-220ENST00000561253 BMP3P12645 472 aa8.02□□□□□ -1.13
LRRC28-220ENST00000561253 RXRBP28702 533 aa8.02□□□□□ -1.13
LRRC28-220ENST00000561253 HOXC9P31274 260 aa8.02□□□□□ -1.13
LRRC28-220ENST00000561253 LRRFIP1Q32MZ4 808 aaKnown RBP8.02□□□□□ -1.13
LRRC28-220ENST00000561253 CDPF1Q6NVV7 123 aa8.02□□□□□ -1.13
LRRC28-220ENST00000561253 HID1Q8IV36 788 aa8.02□□□□□ -1.13
LRRC28-220ENST00000561253 UNC5CLQ8IV45 518 aa8.02□□□□□ -1.13
LRRC28-220ENST00000561253 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.02□□□□□ -1.13
LRRC28-220ENST00000561253 UBXN4Q92575 508 aa8.02□□□□□ -1.13
LRRC28-220ENST00000561253 ANAPC16Q96DE5 110 aa8.02□□□□□ -1.13
LRRC28-220ENST00000561253 BTG4Q9NY30 223 aa8.02□□□□□ -1.13
LRRC28-220ENST00000561253 MRVI1Q9Y6F6 885 aa8.02□□□□□ -1.13
LRRC28-220ENST00000561253 BLMP54132 1417 aaPredicted RBP8.02□□□□□ -1.13
LRRC28-220ENST00000561253 NCAPD2Q15021 1401 aa8.02□□□□□ -1.13
LRRC28-220ENST00000561253 COL3A1P02461 1466 aaPredicted RBP8.01□□□□□ -1.13
LRRC28-220ENST00000561253 FLT4P35916 1363 aa8.01□□□□□ -1.13
LRRC28-220ENST00000561253 NTF4P34130 210 aa8.01□□□□□ -1.13
LRRC28-220ENST00000561253 GATA4P43694 442 aa8.01□□□□□ -1.13
LRRC28-220ENST00000561253 VPS72Q15906 364 aa8.01□□□□□ -1.13
LRRC28-220ENST00000561253 SGO2Q562F6 1265 aa8.01□□□□□ -1.13
LRRC28-220ENST00000561253 TMEM201Q5SNT2 666 aa8.01□□□□□ -1.13
LRRC28-220ENST00000561253 CC2D1BQ5T0F9 858 aaKnown RBP8.01□□□□□ -1.13
LRRC28-220ENST00000561253 OR6P1Q8NGX9 317 aa8.01□□□□□ -1.13
LRRC28-220ENST00000561253 FBLIM1Q8WUP2 373 aa8.01□□□□□ -1.13
LRRC28-220ENST00000561253 DHX38Q92620 1227 aaKnown RBP8.01□□□□□ -1.13
LRRC28-220ENST00000561253 ACSF2Q96CM8 615 aaPredicted RBP8.01□□□□□ -1.13
LRRC28-220ENST00000561253 MYRFLQ96LU7 910 aa8.01□□□□□ -1.13
LRRC28-220ENST00000561253 KCNF1Q9H3M0 494 aa8.01□□□□□ -1.13
LRRC28-220ENST00000561253 ACSS3Q9H6R3 686 aa8.01□□□□□ -1.13
LRRC28-220ENST00000561253 KLHL3Q9UH77 587 aa8.01□□□□□ -1.13
LRRC28-220ENST00000561253 PCOLCE2Q9UKZ9 415 aa8.01□□□□□ -1.13
LRRC28-220ENST00000561253 DAGLAQ9Y4D2 1042 aa8.01□□□□□ -1.13
LRRC28-220ENST00000561253 GLI3P10071 1580 aa8.01□□□□□ -1.13
LRRC28-220ENST00000561253 SPATA31A5Q5VU36 1347 aa8.01□□□□□ -1.13
LRRC28-220ENST00000561253 SPATA31A7Q8IWB4 1347 aa8.01□□□□□ -1.13
LRRC28-220ENST00000561253 CDK12Q9NYV4 1490 aaPredicted RBP8□□□□□ -1.13
LRRC28-220ENST00000561253 DHX15O43143 795 aaKnown RBP8□□□□□ -1.13
LRRC28-220ENST00000561253 YARSP54577 528 aaKnown RBP8□□□□□ -1.13
LRRC28-220ENST00000561253 HSP90AB2PQ58FF8 381 aa8□□□□□ -1.13
LRRC28-220ENST00000561253 MEX3CQ5U5Q3 659 aaKnown RBP8□□□□□ -1.13
LRRC28-220ENST00000561253 MORC1Q86VD1 984 aa8□□□□□ -1.13
LRRC28-220ENST00000561253 ARMC10Q8N2F6 343 aa8□□□□□ -1.13
LRRC28-220ENST00000561253 FAM13CQ8NE31 585 aa8□□□□□ -1.13
LRRC28-220ENST00000561253 ARMC5Q96C12 935 aa8□□□□□ -1.13
LRRC28-220ENST00000561253 SHDQ96IW2 340 aa8□□□□□ -1.13
LRRC28-220ENST00000561253 FBRSQ9HAH7 460 aa8□□□□□ -1.13
LRRC28-220ENST00000561253 GMIPQ9P107 970 aa8□□□□□ -1.13
LRRC28-220ENST00000561253 SPATA31A1Q5TZJ5 1347 aa8□□□□□ -1.13
LRRC28-220ENST00000561253 WDR17Q8IZU2 1322 aa8□□□□□ -1.13
LRRC28-220ENST00000561253 LTN1O94822 1766 aa7.99□□□□□ -1.13
LRRC28-220ENST00000561253 DISP2A7MBM2 1401 aa7.99□□□□□ -1.13
LRRC28-220ENST00000561253 GDF11O95390 407 aa7.99□□□□□ -1.13
LRRC28-220ENST00000561253 NFICP08651 508 aa7.99□□□□□ -1.13
LRRC28-220ENST00000561253 MAP4P27816 1152 aaKnown RBP7.99□□□□□ -1.13
LRRC28-220ENST00000561253 PPP2R1AP30153 589 aa7.99□□□□□ -1.13
LRRC28-220ENST00000561253 GIPRP48546 466 aa7.99□□□□□ -1.13
LRRC28-220ENST00000561253 MAP7Q14244 749 aa7.99□□□□□ -1.13
LRRC28-220ENST00000561253 ZNF772Q68DY9 489 aaPredicted RBP7.99□□□□□ -1.13
LRRC28-220ENST00000561253 SLC6A19Q695T7 634 aa7.99□□□□□ -1.13
LRRC28-220ENST00000561253 MCATQ8IVS2 390 aaKnown RBP7.99□□□□□ -1.13
LRRC28-220ENST00000561253 FAM20CQ8IXL6 584 aa7.99□□□□□ -1.13
LRRC28-220ENST00000561253 TMEM87BQ96K49 555 aa7.99□□□□□ -1.13
LRRC28-220ENST00000561253 SEMA6CQ9H3T2 930 aa7.99□□□□□ -1.13
LRRC28-220ENST00000561253 ZNF408Q9H9D4 720 aa7.99□□□□□ -1.13
LRRC28-220ENST00000561253 TJP2Q9UDY2 1190 aa7.99□□□□□ -1.13
LRRC28-220ENST00000561253 CRB1P82279 1406 aa7.98□□□□□ -1.13
LRRC28-220ENST00000561253 FAM95CA0A1B0GW59 222 aa7.98□□□□□ -1.13
LRRC28-220ENST00000561253 SLC22A31A6NKX4 558 aa7.98□□□□□ -1.13
LRRC28-220ENST00000561253 IGSF3O75054 1194 aa7.98□□□□□ -1.13
LRRC28-220ENST00000561253 ETFBP38117 255 aa7.98□□□□□ -1.13
LRRC28-220ENST00000561253 TNNT2P45379 298 aaPredicted RBP7.98□□□□□ -1.13
LRRC28-220ENST00000561253 MTHFSP49914 203 aa7.98□□□□□ -1.13
LRRC28-220ENST00000561253 NKG7Q16617 165 aa7.98□□□□□ -1.13
LRRC28-220ENST00000561253 OVOS1Q6IE37 1185 aa7.98□□□□□ -1.13
LRRC28-220ENST00000561253 UBE3DQ7Z6J8 389 aa7.98□□□□□ -1.13
LRRC28-220ENST00000561253 LSRQ86X29 649 aaPredicted RBP7.98□□□□□ -1.13
LRRC28-220ENST00000561253 MRPL41Q8IXM3 137 aaKnown RBP7.98□□□□□ -1.13
LRRC28-220ENST00000561253 TMEM151AQ8N4L1 468 aa7.98□□□□□ -1.13
LRRC28-220ENST00000561253 RBBP8NLQ8NC74 664 aaPredicted RBP7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms