RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 TRIM60Q495X7 471 aa12.08□□□□□ -0.48
LDLR-214ENST00000560628 TTBK2Q6IQ55 1244 aa12.08□□□□□ -0.48
LDLR-214ENST00000560628 MAMDC4Q6UXC1 1216 aa12.08□□□□□ -0.48
LDLR-214ENST00000560628 RNF180Q86T96 592 aa12.08□□□□□ -0.48
LDLR-214ENST00000560628 TDHQ8IZJ6 230 aa12.08□□□□□ -0.48
LDLR-214ENST00000560628 MSL3Q8N5Y2 521 aaKnown RBP12.08□□□□□ -0.48
LDLR-214ENST00000560628 FGD4Q96M96 766 aa12.08□□□□□ -0.48
LDLR-214ENST00000560628 PRDM5Q9NQX1 630 aaPredicted RBP12.08□□□□□ -0.48
LDLR-214ENST00000560628 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.08□□□□□ -0.48
LDLR-214ENST00000560628 PRKAG2Q9UGJ0 569 aa12.08□□□□□ -0.48
LDLR-214ENST00000560628 FBXO40Q9UH90 709 aa12.08□□□□□ -0.48
LDLR-214ENST00000560628 FAM184BQ9ULE4 1060 aa12.08□□□□□ -0.48
LDLR-214ENST00000560628 PRR12Q9ULL5 1215 aa12.08□□□□□ -0.48
LDLR-214ENST00000560628 ZNF536O15090 1300 aa12.08□□□□□ -0.48
LDLR-214ENST00000560628 SYNGAP1Q96PV0 1343 aa12.08□□□□□ -0.48
LDLR-214ENST00000560628 POTEB2H3BUK9 544 aa12.07□□□□□ -0.48
LDLR-214ENST00000560628 PLA2G6O60733 806 aa12.07□□□□□ -0.48
LDLR-214ENST00000560628 NOVP48745 357 aa12.07□□□□□ -0.48
LDLR-214ENST00000560628 IRX5P78411 483 aaPredicted RBP12.07□□□□□ -0.48
LDLR-214ENST00000560628 ACVR2BQ13705 512 aa12.07□□□□□ -0.48
LDLR-214ENST00000560628 CWC27Q6UX04 472 aaKnown RBP12.07□□□□□ -0.48
LDLR-214ENST00000560628 ZNF467Q7Z7K2 595 aaPredicted RBP12.07□□□□□ -0.48
LDLR-214ENST00000560628 TICAM2Q86XR7 235 aa12.07□□□□□ -0.48
LDLR-214ENST00000560628 TRERF1Q96PN7 1200 aa12.07□□□□□ -0.48
LDLR-214ENST00000560628 TMEM47Q9BQJ4 181 aa12.07□□□□□ -0.48
LDLR-214ENST00000560628 OSBPL3Q9H4L5 887 aa12.07□□□□□ -0.48
LDLR-214ENST00000560628 ACAD9Q9H845 621 aa12.07□□□□□ -0.48
LDLR-214ENST00000560628 GPCPD1Q9NPB8 672 aa12.07□□□□□ -0.48
LDLR-214ENST00000560628 RNF146Q9NTX7 359 aa12.07□□□□□ -0.48
LDLR-214ENST00000560628 PHF24Q9UPV7 400 aa12.07□□□□□ -0.48
LDLR-214ENST00000560628 FRMPD2Q68DX3 1309 aaPredicted RBP12.07□□□□□ -0.48
LDLR-214ENST00000560628 TOP1P11387 765 aaKnown RBP12.06□□□□□ -0.48
LDLR-214ENST00000560628 TLE2Q04725 743 aa12.06□□□□□ -0.48
LDLR-214ENST00000560628 MUM1L1Q5H9M0 696 aa12.06□□□□□ -0.48
LDLR-214ENST00000560628 AKNAD1Q5T1N1 836 aa12.06□□□□□ -0.48
LDLR-214ENST00000560628 MFSD6Q6ZSS7 791 aa12.06□□□□□ -0.48
LDLR-214ENST00000560628 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.06□□□□□ -0.482e-6■■□□□ 12
LDLR-214ENST00000560628 ARMCX2Q7L311 632 aa12.06□□□□□ -0.48
LDLR-214ENST00000560628 SH3RF1Q7Z6J0 888 aa12.06□□□□□ -0.48
LDLR-214ENST00000560628 TBC1D10CQ8IV04 446 aa12.06□□□□□ -0.48
LDLR-214ENST00000560628 CCDC144CPQ8IYA2 1237 aa12.06□□□□□ -0.48
LDLR-214ENST00000560628 DCAF4Q8WV16 495 aa12.06□□□□□ -0.48
LDLR-214ENST00000560628 A1CFQ9NQ94 594 aaKnown RBP12.06□□□□□ -0.48
LDLR-214ENST00000560628 DIAPH3Q9NSV4 1193 aa12.06□□□□□ -0.48
LDLR-214ENST00000560628 TCP11L1Q9NUJ3 509 aa12.06□□□□□ -0.48
LDLR-214ENST00000560628 DDX49Q9Y6V7 483 aaKnown RBP12.06□□□□□ -0.48
LDLR-214ENST00000560628 FRMPD3Q5JV73 1810 aa12.06□□□□□ -0.48
LDLR-214ENST00000560628 RANBP2P49792 3224 aaKnown RBP12.05□□□□□ -0.48
LDLR-214ENST00000560628 A0A1W2PQ45 241 aaPredicted RBP12.05□□□□□ -0.48
LDLR-214ENST00000560628 A0A1W2PQY0 241 aa12.05□□□□□ -0.48
LDLR-214ENST00000560628 MYADML2A6NDP7 307 aa12.05□□□□□ -0.48
LDLR-214ENST00000560628 SOWAHBA6NEL2 793 aa12.05□□□□□ -0.48
LDLR-214ENST00000560628 ZNF213O14771 459 aa12.05□□□□□ -0.48
LDLR-214ENST00000560628 ADCY6O43306 1168 aa12.05□□□□□ -0.48
LDLR-214ENST00000560628 ADAMTS4O75173 837 aa12.05□□□□□ -0.48
LDLR-214ENST00000560628 MFAP1P55081 439 aaKnown RBP12.05□□□□□ -0.48
LDLR-214ENST00000560628 IRX6P78412 446 aaPredicted RBP12.05□□□□□ -0.48
LDLR-214ENST00000560628 SNX17Q15036 470 aa12.05□□□□□ -0.48
LDLR-214ENST00000560628 KCNA10Q16322 511 aa12.05□□□□□ -0.48
LDLR-214ENST00000560628 TKFCQ3LXA3 575 aa12.05□□□□□ -0.48
LDLR-214ENST00000560628 CCDC144BQ3MJ40 725 aa12.05□□□□□ -0.48
LDLR-214ENST00000560628 LRIT3Q3SXY7 679 aa12.05□□□□□ -0.48
LDLR-214ENST00000560628 SYDE2Q5VT97 1194 aa12.05□□□□□ -0.48
LDLR-214ENST00000560628 FAM133AQ8N9E0 248 aa12.05□□□□□ -0.48
LDLR-214ENST00000560628 BADQ92934 168 aa12.05□□□□□ -0.48
LDLR-214ENST00000560628 PURBQ96QR8 312 aaKnown RBP12.05□□□□□ -0.48
LDLR-214ENST00000560628 ZKSCAN3Q9BRR0 538 aa12.05□□□□□ -0.48
LDLR-214ENST00000560628 ABHD16BQ9H3Z7 469 aa12.05□□□□□ -0.48
LDLR-214ENST00000560628 CCPG1Q9ULG6 757 aa12.05□□□□□ -0.48
LDLR-214ENST00000560628 SYNRGQ9UMZ2 1314 aa12.05□□□□□ -0.48
LDLR-214ENST00000560628 PLXNA1Q9UIW2 1896 aa12.04□□□□□ -0.48
LDLR-214ENST00000560628 TRIM43BA6NCK2 446 aa12.04□□□□□ -0.48
LDLR-214ENST00000560628 DUSP11O75319 330 aaKnown RBP12.04□□□□□ -0.48
LDLR-214ENST00000560628 C6orf222P0C671 652 aaPredicted RBP12.04□□□□□ -0.48
LDLR-214ENST00000560628 ACLYP53396 1101 aa12.04□□□□□ -0.48
LDLR-214ENST00000560628 NSMFQ6X4W1 530 aa12.04□□□□□ -0.48
LDLR-214ENST00000560628 NOL8Q76FK4 1167 aaKnown RBP12.04□□□□□ -0.48
LDLR-214ENST00000560628 Q7L0L9 218 aa12.04□□□□□ -0.48
LDLR-214ENST00000560628 KLHDC9Q8NEP7 349 aa12.04□□□□□ -0.48
LDLR-214ENST00000560628 VTI1AQ96AJ9 217 aa12.04□□□□□ -0.48
LDLR-214ENST00000560628 TRIM43Q96BQ3 446 aaPredicted RBP12.04□□□□□ -0.48
LDLR-214ENST00000560628 TSEN34Q9BSV6 310 aaKnown RBP12.04□□□□□ -0.48
LDLR-214ENST00000560628 PDLIM7Q9NR12 457 aa12.04□□□□□ -0.48
LDLR-214ENST00000560628 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.03□□□□□ -0.48
LDLR-214ENST00000560628 PQBP1O60828 265 aaKnown RBP12.03□□□□□ -0.48
LDLR-214ENST00000560628 ICAM1P05362 532 aa12.03□□□□□ -0.48
LDLR-214ENST00000560628 PDHBP11177 359 aa12.03□□□□□ -0.48
LDLR-214ENST00000560628 PDE4AP27815 886 aa12.03□□□□□ -0.48
LDLR-214ENST00000560628 GNASQ5JWF2 1037 aa12.03□□□□□ -0.48
LDLR-214ENST00000560628 C1orf53Q5VUE5 145 aa12.03□□□□□ -0.48
LDLR-214ENST00000560628 CCSAPQ6IQ19 270 aaPredicted RBP12.03□□□□□ -0.48
LDLR-214ENST00000560628 BTNL9Q6UXG8 535 aa12.03□□□□□ -0.48
LDLR-214ENST00000560628 EEPD1Q7L9B9 569 aa12.03□□□□□ -0.48
LDLR-214ENST00000560628 DEFB123Q8N688 67 aa12.03□□□□□ -0.48
LDLR-214ENST00000560628 ESR2Q92731 530 aa12.03□□□□□ -0.48
LDLR-214ENST00000560628 TTC14Q96N46 770 aa12.03□□□□□ -0.48
LDLR-214ENST00000560628 KATNBL1Q9H079 304 aa12.03□□□□□ -0.48
LDLR-214ENST00000560628 RANBP17Q9H2T7 1088 aaKnown RBP12.03□□□□□ -0.48
LDLR-214ENST00000560628 RNF41Q9H4P4 317 aaPredicted RBP12.03□□□□□ -0.48
LDLR-214ENST00000560628 STARD7Q9NQZ5 370 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms