RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 MTMR8Q96EF0 704 aa25.34■■□□□ 1.65
SNX1-210ENST00000560260 AGBL1Q96MI9 1066 aa25.34■■□□□ 1.65
SNX1-210ENST00000560260 VAT1LQ9HCJ6 419 aa25.34■■□□□ 1.65
SNX1-210ENST00000560260 RIPK3Q9Y572 518 aa25.34■■□□□ 1.65
SNX1-210ENST00000560260 BAZ2BQ9UIF8 2168 aaKnown RBP25.33■■□□□ 1.65
SNX1-210ENST00000560260 FDX1P10109 184 aa25.33■■□□□ 1.64
SNX1-210ENST00000560260 STAT3P40763 770 aa25.33■■□□□ 1.64
SNX1-210ENST00000560260 FUT2Q10981 343 aa25.33■■□□□ 1.64
SNX1-210ENST00000560260 SNRNP48Q6IEG0 339 aaKnown RBP25.33■■□□□ 1.64
SNX1-210ENST00000560260 RIOX2Q8IUF8 465 aa25.33■■□□□ 1.64
SNX1-210ENST00000560260 TRIM47Q96LD4 638 aa25.33■■□□□ 1.64
SNX1-210ENST00000560260 TEX13BQ9BXU2 312 aa25.33■■□□□ 1.64
SNX1-210ENST00000560260 NCOA5Q9HCD5 579 aaKnown RBP25.33■■□□□ 1.64
SNX1-210ENST00000560260 SMCHD1A6NHR9 2005 aa25.33■■□□□ 1.64
SNX1-210ENST00000560260 CNTNAP5Q8WYK1 1306 aa25.32■■□□□ 1.64
SNX1-210ENST00000560260 PLXNB2O15031 1838 aa25.32■■□□□ 1.64
SNX1-210ENST00000560260 DHX16O60231 1041 aaKnown RBP25.32■■□□□ 1.64
SNX1-210ENST00000560260 ADD1P35611 737 aaKnown RBP25.32■■□□□ 1.64
SNX1-210ENST00000560260 OAZ1P54368 228 aa25.32■■□□□ 1.64
SNX1-210ENST00000560260 ZNF274Q96GC6 653 aaPredicted RBP25.32■■□□□ 1.64
SNX1-210ENST00000560260 SPZ1Q9BXG8 430 aa25.32■■□□□ 1.64
SNX1-210ENST00000560260 PPP1R11O60927 126 aaPredicted RBP25.31■■□□□ 1.64
SNX1-210ENST00000560260 ERCC3P19447 782 aa25.31■■□□□ 1.64
SNX1-210ENST00000560260 PSMC4P43686 418 aa25.31■■□□□ 1.64
SNX1-210ENST00000560260 GNAQP50148 359 aa25.31■■□□□ 1.64
SNX1-210ENST00000560260 CCT2P78371 535 aaKnown RBP25.31■■□□□ 1.64
SNX1-210ENST00000560260 STK3Q13188 491 aa25.31■■□□□ 1.64
SNX1-210ENST00000560260 ANKRD1Q15327 319 aa25.31■■□□□ 1.64
SNX1-210ENST00000560260 QRICH1Q2TAL8 776 aa25.31■■□□□ 1.64
SNX1-210ENST00000560260 ERO1AQ96HE7 468 aa25.31■■□□□ 1.64
SNX1-210ENST00000560260 PIGSQ96S52 555 aa25.31■■□□□ 1.64
SNX1-210ENST00000560260 RBM28Q9NW13 759 aaKnown RBP25.31■■□□□ 1.64
SNX1-210ENST00000560260 CTDP1Q9Y5B0 961 aaPredicted RBP25.31■■□□□ 1.64
SNX1-210ENST00000560260 CD2BP2O95400 341 aaKnown RBP25.3■■□□□ 1.64
SNX1-210ENST00000560260 ICAM1P05362 532 aa25.3■■□□□ 1.64
SNX1-210ENST00000560260 CCNA1P78396 465 aa25.3■■□□□ 1.64
SNX1-210ENST00000560260 CCDC82Q8N4S0 544 aa25.3■■□□□ 1.64
SNX1-210ENST00000560260 SHCBP1Q8NEM2 672 aa25.3■■□□□ 1.64
SNX1-210ENST00000560260 PIBF1Q8WXW3 757 aa25.3■■□□□ 1.64
SNX1-210ENST00000560260 MYH6P13533 1939 aa25.29■■□□□ 1.64
SNX1-210ENST00000560260 DOCK3Q8IZD9 2030 aa25.29■■□□□ 1.64
SNX1-210ENST00000560260 SLC4A3P48751 1232 aa25.29■■□□□ 1.64
SNX1-210ENST00000560260 ST3GAL1Q11201 340 aa25.29■■□□□ 1.64
SNX1-210ENST00000560260 ME3Q16798 604 aa25.29■■□□□ 1.64
SNX1-210ENST00000560260 NCAPG2Q86XI2 1143 aa25.29■■□□□ 1.64
SNX1-210ENST00000560260 HOMER1Q86YM7 354 aa25.29■■□□□ 1.64
SNX1-210ENST00000560260 LZTS2Q9BRK4 669 aa25.29■■□□□ 1.64
SNX1-210ENST00000560260 CCPG1Q9ULG6 757 aa25.29■■□□□ 1.64
SNX1-210ENST00000560260 HTTP42858 3142 aa25.28■■□□□ 1.64
SNX1-210ENST00000560260 hCG_1642624A0A1W2PR95 340 aa25.28■■□□□ 1.64
SNX1-210ENST00000560260 SMARCA1P28370 1054 aa25.28■■□□□ 1.64
SNX1-210ENST00000560260 MAPK4P31152 587 aa25.28■■□□□ 1.64
SNX1-210ENST00000560260 FCGRTP55899 365 aa25.28■■□□□ 1.64
SNX1-210ENST00000560260 SCRN1Q12765 414 aa25.28■■□□□ 1.64
SNX1-210ENST00000560260 NTRK3Q16288 839 aa25.28■■□□□ 1.64
SNX1-210ENST00000560260 GPR142Q7Z601 462 aa25.28■■□□□ 1.64
SNX1-210ENST00000560260 PRDM10Q9NQV6 1147 aa25.28■■□□□ 1.64
SNX1-210ENST00000560260 ZNF236Q9UL36 1845 aa25.27■■□□□ 1.64
SNX1-210ENST00000560260 TNPO2O14787 897 aaKnown RBP25.27■■□□□ 1.64
SNX1-210ENST00000560260 ZBTB5O15062 677 aa25.27■■□□□ 1.64
SNX1-210ENST00000560260 PFKFB2O60825 505 aa25.27■■□□□ 1.64
SNX1-210ENST00000560260 FMNL1O95466 1100 aaPredicted RBP25.27■■□□□ 1.64
SNX1-210ENST00000560260 SLC25A27O95847 323 aa25.27■■□□□ 1.64
SNX1-210ENST00000560260 KIF22Q14807 665 aa25.27■■□□□ 1.64
SNX1-210ENST00000560260 HOMER2Q9NSB8 354 aa25.27■■□□□ 1.64
SNX1-210ENST00000560260 ALAS1P13196 640 aa25.26■■□□□ 1.63
SNX1-210ENST00000560260 PPP2R5BQ15173 497 aa25.26■■□□□ 1.63
SNX1-210ENST00000560260 USH1GQ495M9 461 aa25.26■■□□□ 1.63
SNX1-210ENST00000560260 MUM1L1Q5H9M0 696 aa25.26■■□□□ 1.63
SNX1-210ENST00000560260 WDR78Q5VTH9 848 aa25.26■■□□□ 1.63
SNX1-210ENST00000560260 OTOP1Q7RTM1 612 aa25.26■■□□□ 1.63
SNX1-210ENST00000560260 PLEKHH3Q7Z736 793 aa25.26■■□□□ 1.63
SNX1-210ENST00000560260 NECAB1Q8N987 351 aa25.26■■□□□ 1.63
SNX1-210ENST00000560260 RNF146Q9NTX7 359 aa25.26■■□□□ 1.63
SNX1-210ENST00000560260 DTNBO60941 627 aa25.25■■□□□ 1.63
SNX1-210ENST00000560260 PPFIA3O75145 1194 aa25.25■■□□□ 1.63
SNX1-210ENST00000560260 SLKQ9H2G2 1235 aaPredicted RBP25.25■■□□□ 1.63
SNX1-210ENST00000560260 MROH8Q9H579 483 aa25.25■■□□□ 1.63
SNX1-210ENST00000560260 GABRQQ9UN88 632 aa25.25■■□□□ 1.63
SNX1-210ENST00000560260 TRIM17Q9Y577 477 aa25.25■■□□□ 1.63
SNX1-210ENST00000560260 CCDC196A0A1B0GTZ2 297 aa25.24■■□□□ 1.63
SNX1-210ENST00000560260 PRKCZQ05513 592 aa25.24■■□□□ 1.63
SNX1-210ENST00000560260 FBXO11Q86XK2 927 aa25.24■■□□□ 1.63
SNX1-210ENST00000560260 CCAR1Q8IX12 1150 aaKnown RBP25.24■■□□□ 1.63
SNX1-210ENST00000560260 CLEC4DQ8WXI8 215 aa25.24■■□□□ 1.63
SNX1-210ENST00000560260 GJD2Q9UKL4 321 aa25.24■■□□□ 1.63
SNX1-210ENST00000560260 LIMCH1Q9UPQ0 1083 aa25.24■■□□□ 1.63
SNX1-210ENST00000560260 PNMA6FA0A0J9YX94 578 aa25.23■■□□□ 1.63
SNX1-210ENST00000560260 ST18O60284 1047 aa25.23■■□□□ 1.63
SNX1-210ENST00000560260 PTPREP23469 700 aa25.23■■□□□ 1.63
SNX1-210ENST00000560260 COPB2P35606 906 aa25.23■■□□□ 1.63
SNX1-210ENST00000560260 GRB14Q14449 540 aa25.23■■□□□ 1.63
SNX1-210ENST00000560260 TKFCQ3LXA3 575 aa25.23■■□□□ 1.63
SNX1-210ENST00000560260 MORN1Q5T089 497 aa25.23■■□□□ 1.63
SNX1-210ENST00000560260 DHX30Q7L2E3 1194 aaKnown RBP eCLIP25.23■■□□□ 1.63
SNX1-210ENST00000560260 PHKBQ93100 1093 aa25.23■■□□□ 1.63
SNX1-210ENST00000560260 GTF3C6Q969F1 213 aa25.23■■□□□ 1.63
SNX1-210ENST00000560260 RRP36Q96EU6 259 aaKnown RBP25.23■■□□□ 1.63
SNX1-210ENST00000560260 TRERF1Q96PN7 1200 aa25.23■■□□□ 1.63
SNX1-210ENST00000560260 RBBP6Q7Z6E9 1792 aaKnown RBP25.23■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms