RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 CTDSPL2Q05D32 466 aa13.84□□□□□ -0.19
USP3-214ENST00000559718 PDE4BQ07343 736 aa13.84□□□□□ -0.19
USP3-214ENST00000559718 ANKRD45Q5TZF3 282 aa13.84□□□□□ -0.19
USP3-214ENST00000559718 SLC17A8Q8NDX2 589 aa13.84□□□□□ -0.19
USP3-214ENST00000559718 BADQ92934 168 aa13.84□□□□□ -0.19
USP3-214ENST00000559718 FGD4Q96M96 766 aa13.84□□□□□ -0.19
USP3-214ENST00000559718 CNPY2Q9Y2B0 182 aa13.84□□□□□ -0.19
USP3-214ENST00000559718 CTDP1Q9Y5B0 961 aaPredicted RBP13.84□□□□□ -0.19
USP3-214ENST00000559718 TACC3Q9Y6A5 838 aa13.84□□□□□ -0.19
USP3-214ENST00000559718 NMT2O60551 498 aa13.83□□□□□ -0.2
USP3-214ENST00000559718 ADAMTS4O75173 837 aa13.83□□□□□ -0.2
USP3-214ENST00000559718 BMP3P12645 472 aa13.83□□□□□ -0.2
USP3-214ENST00000559718 SHHQ15465 462 aa13.83□□□□□ -0.2
USP3-214ENST00000559718 C9orf50Q5SZB4 431 aa13.83□□□□□ -0.2
USP3-214ENST00000559718 VPS53Q5VIR6 699 aa13.83□□□□□ -0.2
USP3-214ENST00000559718 C1orf53Q5VUE5 145 aa13.83□□□□□ -0.2
USP3-214ENST00000559718 MAMDC4Q6UXC1 1216 aa13.83□□□□□ -0.2
USP3-214ENST00000559718 RASGRP2Q7LDG7 609 aa13.83□□□□□ -0.2
USP3-214ENST00000559718 RNF180Q86T96 592 aa13.83□□□□□ -0.2
USP3-214ENST00000559718 HOMER2Q9NSB8 354 aa13.83□□□□□ -0.2
USP3-214ENST00000559718 ZHX1Q9UKY1 873 aaPredicted RBP13.83□□□□□ -0.2
USP3-214ENST00000559718 ISY1Q9ULR0 285 aaKnown RBP13.83□□□□□ -0.2
USP3-214ENST00000559718 SYNPO2Q9UMS6 1093 aa13.83□□□□□ -0.2
USP3-214ENST00000559718 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.83□□□□□ -0.2
USP3-214ENST00000559718 MCM3APO60318 1980 aa13.83□□□□□ -0.2
USP3-214ENST00000559718 SYNGAP1Q96PV0 1343 aa13.83□□□□□ -0.2
USP3-214ENST00000559718 A0A1W2PQ45 241 aaPredicted RBP13.82□□□□□ -0.2
USP3-214ENST00000559718 A0A1W2PQY0 241 aa13.82□□□□□ -0.2
USP3-214ENST00000559718 MYADML2A6NDP7 307 aa13.82□□□□□ -0.2
USP3-214ENST00000559718 TMEM232C9JQI7 657 aa13.82□□□□□ -0.2
USP3-214ENST00000559718 SLC3A2P08195 630 aaKnown RBP13.82□□□□□ -0.2
USP3-214ENST00000559718 MCCP23508 829 aa13.82□□□□□ -0.2
USP3-214ENST00000559718 ITGB8P26012 769 aa13.82□□□□□ -0.2
USP3-214ENST00000559718 ANKRD35Q8N283 1001 aa13.82□□□□□ -0.2
USP3-214ENST00000559718 MSL3Q8N5Y2 521 aaKnown RBP13.82□□□□□ -0.2
USP3-214ENST00000559718 IL17RBQ9NRM6 502 aa13.82□□□□□ -0.2
USP3-214ENST00000559718 SYNRGQ9UMZ2 1314 aa13.82□□□□□ -0.2
USP3-214ENST00000559718 ADCY6O43306 1168 aa13.81□□□□□ -0.2
USP3-214ENST00000559718 PQBP1O60828 265 aaKnown RBP13.81□□□□□ -0.2
USP3-214ENST00000559718 SLC1A4P43007 532 aa13.81□□□□□ -0.2
USP3-214ENST00000559718 SNAP25P60880 206 aa13.81□□□□□ -0.2
USP3-214ENST00000559718 CNTN2Q02246 1040 aa13.81□□□□□ -0.2
USP3-214ENST00000559718 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.81□□□□□ -0.2
USP3-214ENST00000559718 ZNF467Q7Z7K2 595 aaPredicted RBP13.81□□□□□ -0.2
USP3-214ENST00000559718 KLHDC9Q8NEP7 349 aa13.81□□□□□ -0.2
USP3-214ENST00000559718 CHST13Q8NET6 341 aa13.81□□□□□ -0.2
USP3-214ENST00000559718 AGBL1Q96MI9 1066 aa13.81□□□□□ -0.2
USP3-214ENST00000559718 FAM161BQ96MY7 647 aa13.81□□□□□ -0.2
USP3-214ENST00000559718 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.81□□□□□ -0.2
USP3-214ENST00000559718 FAM184BQ9ULE4 1060 aa13.81□□□□□ -0.2
USP3-214ENST00000559718 STXBP5LQ9Y2K9 1186 aa13.81□□□□□ -0.2
USP3-214ENST00000559718 ZNF536O15090 1300 aa13.81□□□□□ -0.2
USP3-214ENST00000559718 TSPY2A6NKD2 308 aa13.8□□□□□ -0.2
USP3-214ENST00000559718 TTLL13PA6NNM8 815 aa13.8□□□□□ -0.2
USP3-214ENST00000559718 CLTBP09497 229 aa13.8□□□□□ -0.2
USP3-214ENST00000559718 STAT2P52630 851 aa13.8□□□□□ -0.2
USP3-214ENST00000559718 ACLYP53396 1101 aa13.8□□□□□ -0.2
USP3-214ENST00000559718 OAZ1P54368 228 aa13.8□□□□□ -0.2
USP3-214ENST00000559718 PDE1AP54750 535 aa13.8□□□□□ -0.2
USP3-214ENST00000559718 IKQ13123 557 aaPredicted RBP13.8□□□□□ -0.2
USP3-214ENST00000559718 ACVR2BQ13705 512 aa13.8□□□□□ -0.2
USP3-214ENST00000559718 KCNA10Q16322 511 aa13.8□□□□□ -0.2
USP3-214ENST00000559718 CCSAPQ6IQ19 270 aaPredicted RBP13.8□□□□□ -0.2
USP3-214ENST00000559718 KCTD1Q719H9 257 aa13.8□□□□□ -0.2
USP3-214ENST00000559718 ARMCX2Q7L311 632 aa13.8□□□□□ -0.2
USP3-214ENST00000559718 STAG1Q8WVM7 1258 aa13.8□□□□□ -0.2
USP3-214ENST00000559718 EVI5LQ96CN4 794 aa13.8□□□□□ -0.2
USP3-214ENST00000559718 GMCL1Q96IK5 515 aa13.8□□□□□ -0.2
USP3-214ENST00000559718 FAM227BQ96M60 508 aa13.8□□□□□ -0.2
USP3-214ENST00000559718 STX8Q9UNK0 236 aa13.8□□□□□ -0.2
USP3-214ENST00000559718 MTMR7Q9Y216 660 aa13.8□□□□□ -0.2
USP3-214ENST00000559718 LAMA2P24043 3122 aaKnown RBP13.79□□□□□ -0.2
USP3-214ENST00000559718 DUSP11O75319 330 aaKnown RBP13.79□□□□□ -0.2
USP3-214ENST00000559718 EPHB4P54760 987 aa13.79□□□□□ -0.2
USP3-214ENST00000559718 CCDC144BQ3MJ40 725 aa13.79□□□□□ -0.2
USP3-214ENST00000559718 FAM160B2Q86V87 743 aa13.79□□□□□ -0.2
USP3-214ENST00000559718 CCDC144CPQ8IYA2 1237 aa13.79□□□□□ -0.2
USP3-214ENST00000559718 CHURC1Q8WUH1 139 aa13.79□□□□□ -0.2
USP3-214ENST00000559718 GUCD1Q96NT3 240 aa13.79□□□□□ -0.2
USP3-214ENST00000559718 TSEN34Q9BSV6 310 aaKnown RBP13.79□□□□□ -0.2
USP3-214ENST00000559718 KATNBL1Q9H079 304 aa13.79□□□□□ -0.2
USP3-214ENST00000559718 ACAD9Q9H845 621 aa13.79□□□□□ -0.2
USP3-214ENST00000559718 A1CFQ9NQ94 594 aaKnown RBP13.79□□□□□ -0.2
USP3-214ENST00000559718 STARD7Q9NQZ5 370 aa13.79□□□□□ -0.2
USP3-214ENST00000559718 RNF146Q9NTX7 359 aa13.79□□□□□ -0.2
USP3-214ENST00000559718 FBXO40Q9UH90 709 aa13.79□□□□□ -0.2
USP3-214ENST00000559718 DDX49Q9Y6V7 483 aaKnown RBP13.79□□□□□ -0.2
USP3-214ENST00000559718 A0A0D9SFI3 127 aa13.78□□□□□ -0.2
USP3-214ENST00000559718 KIAA0355O15063 1070 aa13.78□□□□□ -0.2
USP3-214ENST00000559718 RANBP6O60518 1105 aaKnown RBP13.78□□□□□ -0.2
USP3-214ENST00000559718 C6orf222P0C671 652 aaPredicted RBP13.78□□□□□ -0.2
USP3-214ENST00000559718 PTGS1P23219 599 aa13.78□□□□□ -0.2
USP3-214ENST00000559718 FAAP100Q0VG06 881 aa13.78□□□□□ -0.2
USP3-214ENST00000559718 HDAC1Q13547 482 aaPredicted RBP13.78□□□□□ -0.2
USP3-214ENST00000559718 FAM109BQ6ICB4 259 aaPredicted RBP13.78□□□□□ -0.2
USP3-214ENST00000559718 RCSD1Q6JBY9 416 aa13.78□□□□□ -0.2
USP3-214ENST00000559718 CCDC174Q6PII3 467 aa13.78□□□□□ -0.2
USP3-214ENST00000559718 FAM133AQ8N9E0 248 aa13.78□□□□□ -0.2
USP3-214ENST00000559718 ABHD16BQ9H3Z7 469 aa13.78□□□□□ -0.2
USP3-214ENST00000559718 ANAPC4Q9UJX5 808 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms