RNA–Protein interactions for RNA: ENST00000559347.1

SPG11-216, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 716 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-216ENST00000559347 DIS3Q9Y2L1 958 aaKnown RBP12.88□□□□□ -0.35
SPG11-216ENST00000559347 TNKSO95271 1327 aa12.88□□□□□ -0.35
SPG11-216ENST00000559347 FRMPD2Q68DX3 1309 aaPredicted RBP12.88□□□□□ -0.35
SPG11-216ENST00000559347 MSCO60682 206 aa12.87□□□□□ -0.35
SPG11-216ENST00000559347 CYP21A2P08686 494 aa12.87□□□□□ -0.35
SPG11-216ENST00000559347 SLC4A3P48751 1232 aa12.87□□□□□ -0.35
SPG11-216ENST00000559347 BTNL9Q6UXG8 535 aa12.87□□□□□ -0.35
SPG11-216ENST00000559347 NECAB2Q7Z6G3 386 aa12.87□□□□□ -0.35
SPG11-216ENST00000559347 IQCA1Q86XH1 822 aa12.87□□□□□ -0.35
SPG11-216ENST00000559347 DGKHQ86XP1 1220 aa12.87□□□□□ -0.35
SPG11-216ENST00000559347 CHST13Q8NET6 341 aa12.87□□□□□ -0.35
SPG11-216ENST00000559347 AGBL1Q96MI9 1066 aa12.87□□□□□ -0.35
SPG11-216ENST00000559347 KRT23Q9C075 422 aa12.87□□□□□ -0.35
SPG11-216ENST00000559347 RANBP17Q9H2T7 1088 aaKnown RBP12.87□□□□□ -0.35
SPG11-216ENST00000559347 HOMER2Q9NSB8 354 aa12.87□□□□□ -0.35
SPG11-216ENST00000559347 PFASO15067 1338 aa12.87□□□□□ -0.35
SPG11-216ENST00000559347 SEPT4O43236 478 aa12.86□□□□□ -0.35
SPG11-216ENST00000559347 CNGA1P29973 690 aa12.86□□□□□ -0.35
SPG11-216ENST00000559347 SLC16A2P36021 539 aa12.86□□□□□ -0.35
SPG11-216ENST00000559347 SNAP25P60880 206 aa12.86□□□□□ -0.35
SPG11-216ENST00000559347 ZNF543Q08ER8 600 aa12.86□□□□□ -0.35
SPG11-216ENST00000559347 CCDC178Q5BJE1 867 aa12.86□□□□□ -0.35
SPG11-216ENST00000559347 BMP2KLQ5H9B9 411 aa12.86□□□□□ -0.35
SPG11-216ENST00000559347 SYDE2Q5VT97 1194 aa12.86□□□□□ -0.35
SPG11-216ENST00000559347 TTBK2Q6IQ55 1244 aa12.86□□□□□ -0.35
SPG11-216ENST00000559347 CCDC174Q6PII3 467 aa12.86□□□□□ -0.35
SPG11-216ENST00000559347 ENAHQ8N8S7 591 aaPredicted RBP12.86□□□□□ -0.35
SPG11-216ENST00000559347 PNMA1Q8ND90 353 aa12.86□□□□□ -0.35
SPG11-216ENST00000559347 FGD4Q96M96 766 aa12.86□□□□□ -0.35
SPG11-216ENST00000559347 ZSCAN10Q96SZ4 725 aaPredicted RBP12.86□□□□□ -0.35
SPG11-216ENST00000559347 TINF2Q9BSI4 451 aa12.86□□□□□ -0.35
SPG11-216ENST00000559347 ACAD9Q9H845 621 aa12.86□□□□□ -0.35
SPG11-216ENST00000559347 RNF146Q9NTX7 359 aa12.86□□□□□ -0.35
SPG11-216ENST00000559347 LTBP2Q14767 1821 aa12.85□□□□□ -0.35
SPG11-216ENST00000559347 ICAM1P05362 532 aa12.85□□□□□ -0.35
SPG11-216ENST00000559347 COL6A1P12109 1028 aa12.85□□□□□ -0.35
SPG11-216ENST00000559347 TAL1P17542 331 aaPredicted RBP12.85□□□□□ -0.35
SPG11-216ENST00000559347 TKFCQ3LXA3 575 aa12.85□□□□□ -0.35
SPG11-216ENST00000559347 GPATCH4Q5T3I0 446 aaKnown RBP12.85□□□□□ -0.35
SPG11-216ENST00000559347 ANKRD35Q8N283 1001 aa12.85□□□□□ -0.35
SPG11-216ENST00000559347 MSL3Q8N5Y2 521 aaKnown RBP12.85□□□□□ -0.35
SPG11-216ENST00000559347 ANKS1AQ92625 1134 aa12.85□□□□□ -0.35
SPG11-216ENST00000559347 DDX11Q96FC9 970 aa12.85□□□□□ -0.35
SPG11-216ENST00000559347 C11orf49Q9H6J7 331 aa12.85□□□□□ -0.35
SPG11-216ENST00000559347 KAT14Q9H8E8 782 aa12.85□□□□□ -0.35
SPG11-216ENST00000559347 GPCPD1Q9NPB8 672 aa12.85□□□□□ -0.35
SPG11-216ENST00000559347 A1CFQ9NQ94 594 aaKnown RBP12.85□□□□□ -0.35
SPG11-216ENST00000559347 ZSWIM5Q9P217 1185 aa12.85□□□□□ -0.35
SPG11-216ENST00000559347 NRBP1Q9UHY1 535 aa12.85□□□□□ -0.35
SPG11-216ENST00000559347 TAF6LQ9Y6J9 622 aa12.85□□□□□ -0.35
SPG11-216ENST00000559347 SYNGAP1Q96PV0 1343 aa12.85□□□□□ -0.35
SPG11-216ENST00000559347 ALAS1P13196 640 aa12.84□□□□□ -0.35
SPG11-216ENST00000559347 MUM1L1Q5H9M0 696 aa12.84□□□□□ -0.35
SPG11-216ENST00000559347 PRAMEF19Q5SWL8 479 aa12.84□□□□□ -0.35
SPG11-216ENST00000559347 MAMDC4Q6UXC1 1216 aa12.84□□□□□ -0.35
SPG11-216ENST00000559347 STOX1Q6ZVD7 989 aa12.84□□□□□ -0.35
SPG11-216ENST00000559347 CYB5R4Q7L1T6 521 aa12.84□□□□□ -0.35
SPG11-216ENST00000559347 ZNF467Q7Z7K2 595 aaPredicted RBP12.84□□□□□ -0.35
SPG11-216ENST00000559347 DPF3Q92784 378 aa12.84□□□□□ -0.35
SPG11-216ENST00000559347 MAP4K1Q92918 833 aa12.84□□□□□ -0.35
SPG11-216ENST00000559347 CCDC136Q96JN2 1154 aa12.84□□□□□ -0.35
SPG11-216ENST00000559347 TRERF1Q96PN7 1200 aa12.84□□□□□ -0.35
SPG11-216ENST00000559347 ESYT1Q9BSJ8 1104 aa12.84□□□□□ -0.35
SPG11-216ENST00000559347 UBAC1Q9BSL1 405 aa12.84□□□□□ -0.35
SPG11-216ENST00000559347 CCPG1Q9ULG6 757 aa12.84□□□□□ -0.35
SPG11-216ENST00000559347 RBM8AQ9Y5S9 174 aaKnown RBP12.84□□□□□ -0.35
SPG11-216ENST00000559347 E7EWF7 191 aa12.83□□□□□ -0.36
SPG11-216ENST00000559347 H0YGN5 161 aa12.83□□□□□ -0.36
SPG11-216ENST00000559347 ZNF865P0CJ78 1059 aaPredicted RBP12.83□□□□□ -0.36
SPG11-216ENST00000559347 GOLGA8HP0CJ92 632 aa12.83□□□□□ -0.36
SPG11-216ENST00000559347 SEC23AQ15436 765 aa12.83□□□□□ -0.36
SPG11-216ENST00000559347 ANO1Q5XXA6 986 aa12.83□□□□□ -0.36
SPG11-216ENST00000559347 FAM133AQ8N9E0 248 aa12.83□□□□□ -0.36
SPG11-216ENST00000559347 LSG1Q9H089 658 aaKnown RBP12.83□□□□□ -0.36
SPG11-216ENST00000559347 ASTN1O14525 1302 aa12.83□□□□□ -0.36
SPG11-216ENST00000559347 WDR19Q8NEZ3 1342 aa12.83□□□□□ -0.36
SPG11-216ENST00000559347 DNM1LO00429 736 aa12.82□□□□□ -0.36
SPG11-216ENST00000559347 EVI5O60447 810 aa12.82□□□□□ -0.36
SPG11-216ENST00000559347 SNAI1O95863 264 aaPredicted RBP12.82□□□□□ -0.36
SPG11-216ENST00000559347 CNTN2Q02246 1040 aa12.82□□□□□ -0.36
SPG11-216ENST00000559347 TRDNQ13061 729 aa12.82□□□□□ -0.36
SPG11-216ENST00000559347 ASPRV1Q53RT3 343 aa12.82□□□□□ -0.36
SPG11-216ENST00000559347 IFIT1BQ5T764 474 aaKnown RBP12.82□□□□□ -0.36
SPG11-216ENST00000559347 RALYLQ86SE5 291 aaKnown RBP12.82□□□□□ -0.36
SPG11-216ENST00000559347 CPVLQ9H3G5 476 aa12.82□□□□□ -0.36
SPG11-216ENST00000559347 CYP39A1Q9NYL5 469 aa12.82□□□□□ -0.36
SPG11-216ENST00000559347 CNPY2Q9Y2B0 182 aa12.82□□□□□ -0.36
SPG11-216ENST00000559347 POTEB2H3BUK9 544 aa12.81□□□□□ -0.36
SPG11-216ENST00000559347 NFIBO00712 420 aa12.81□□□□□ -0.36
SPG11-216ENST00000559347 AKR1A1P14550 325 aa12.81□□□□□ -0.36
SPG11-216ENST00000559347 NSMFQ6X4W1 530 aa12.81□□□□□ -0.36
SPG11-216ENST00000559347 ARMCX2Q7L311 632 aa12.81□□□□□ -0.36
SPG11-216ENST00000559347 MB21D2Q8IYB1 491 aaPredicted RBP12.81□□□□□ -0.36
SPG11-216ENST00000559347 C7orf61Q8IZ16 206 aa12.81□□□□□ -0.36
SPG11-216ENST00000559347 NCOA7Q8NI08 942 aa12.81□□□□□ -0.36
SPG11-216ENST00000559347 LENG1Q96BZ8 264 aaPredicted RBP12.81□□□□□ -0.36
SPG11-216ENST00000559347 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.81□□□□□ -0.36
SPG11-216ENST00000559347 ZHX1Q9UKY1 873 aaPredicted RBP12.81□□□□□ -0.36
SPG11-216ENST00000559347 NR2E3Q9Y5X4 410 aa12.81□□□□□ -0.36
SPG11-216ENST00000559347 KIAA1217Q5T5P2 1943 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms