RNA–Protein interactions for RNA: ENST00000557466.1

VIPAS39-210, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-210ENST00000557466 ADGRF4Q8IZF3 695 aa17.3■□□□□ 0.36
VIPAS39-210ENST00000557466 UPF2Q9HAU5 1272 aaKnown RBP17.3■□□□□ 0.36
VIPAS39-210ENST00000557466 PDRG1Q9NUG6 133 aa17.3■□□□□ 0.36
VIPAS39-210ENST00000557466 RIPK3Q9Y572 518 aa17.3■□□□□ 0.36
VIPAS39-210ENST00000557466 GOLGA8BA8MQT2 603 aa17.29■□□□□ 0.36
VIPAS39-210ENST00000557466 ZBTB43O43298 467 aa17.29■□□□□ 0.36
VIPAS39-210ENST00000557466 DHX16O60231 1041 aaKnown RBP17.29■□□□□ 0.36
VIPAS39-210ENST00000557466 PLEKHA8P1O95397 391 aa17.29■□□□□ 0.36
VIPAS39-210ENST00000557466 GNRH1P01148 92 aa17.29■□□□□ 0.36
VIPAS39-210ENST00000557466 KIF5BP33176 963 aa17.29■□□□□ 0.36
VIPAS39-210ENST00000557466 SLC4A3P48751 1232 aa17.29■□□□□ 0.36
VIPAS39-210ENST00000557466 PRKCZQ05513 592 aa17.29■□□□□ 0.36
VIPAS39-210ENST00000557466 CDC37Q16543 378 aaPredicted RBP17.29■□□□□ 0.36
VIPAS39-210ENST00000557466 SYNE3Q6ZMZ3 975 aa17.29■□□□□ 0.36
VIPAS39-210ENST00000557466 PLEKHH3Q7Z736 793 aa17.29■□□□□ 0.36
VIPAS39-210ENST00000557466 COA7Q96BR5 231 aa17.29■□□□□ 0.36
VIPAS39-210ENST00000557466 AGBL1Q96MI9 1066 aa17.29■□□□□ 0.36
VIPAS39-210ENST00000557466 KIF2CQ99661 725 aa17.29■□□□□ 0.36
VIPAS39-210ENST00000557466 JMJD4Q9H9V9 463 aa17.29■□□□□ 0.36
VIPAS39-210ENST00000557466 CWC22Q9HCG8 908 aaKnown RBP17.29■□□□□ 0.36
VIPAS39-210ENST00000557466 SRRDQ9UH36 339 aa17.29■□□□□ 0.36
VIPAS39-210ENST00000557466 NAP1L2Q9ULW6 460 aaPredicted RBP17.29■□□□□ 0.36
VIPAS39-210ENST00000557466 GABRQQ9UN88 632 aa17.29■□□□□ 0.36
VIPAS39-210ENST00000557466 LCTP09848 1927 aa17.29■□□□□ 0.36
VIPAS39-210ENST00000557466 NID2Q14112 1375 aa17.28■□□□□ 0.36
VIPAS39-210ENST00000557466 GOLGA8AA7E2F4 631 aa17.28■□□□□ 0.36
VIPAS39-210ENST00000557466 CYTH3O43739 400 aa17.28■□□□□ 0.36
VIPAS39-210ENST00000557466 SLC25A27O95847 323 aa17.28■□□□□ 0.36
VIPAS39-210ENST00000557466 ICAM1P05362 532 aa17.28■□□□□ 0.36
VIPAS39-210ENST00000557466 COPB2P35606 906 aa17.28■□□□□ 0.36
VIPAS39-210ENST00000557466 IFFO2Q5TF58 517 aa17.28■□□□□ 0.36
VIPAS39-210ENST00000557466 FANCBQ8NB91 859 aa17.28■□□□□ 0.36
VIPAS39-210ENST00000557466 MROH8Q9H579 483 aa17.28■□□□□ 0.36
VIPAS39-210ENST00000557466 VAT1LQ9HCJ6 419 aa17.28■□□□□ 0.36
VIPAS39-210ENST00000557466 CCPG1Q9ULG6 757 aa17.28■□□□□ 0.36
VIPAS39-210ENST00000557466 PTPREP23469 700 aa17.27■□□□□ 0.36
VIPAS39-210ENST00000557466 HOXD10P28358 340 aa17.27■□□□□ 0.36
VIPAS39-210ENST00000557466 RCAN1P53805 252 aa17.27■□□□□ 0.36
VIPAS39-210ENST00000557466 EVCP57679 992 aa17.27■□□□□ 0.36
VIPAS39-210ENST00000557466 RTN1Q16799 776 aa17.27■□□□□ 0.36
VIPAS39-210ENST00000557466 TMTC3Q6ZXV5 915 aa17.27■□□□□ 0.36
VIPAS39-210ENST00000557466 MTMR8Q96EF0 704 aa17.27■□□□□ 0.36
VIPAS39-210ENST00000557466 LARP6Q9BRS8 491 aaKnown RBP17.27■□□□□ 0.36
VIPAS39-210ENST00000557466 RIOX1Q9H6W3 641 aa17.27■□□□□ 0.36
VIPAS39-210ENST00000557466 GJD2Q9UKL4 321 aa17.27■□□□□ 0.36
VIPAS39-210ENST00000557466 HPS5Q9UPZ3 1129 aa17.27■□□□□ 0.36
VIPAS39-210ENST00000557466 PTPN22Q9Y2R2 807 aa17.27■□□□□ 0.36
VIPAS39-210ENST00000557466 ALAS1P13196 640 aa17.26■□□□□ 0.35
VIPAS39-210ENST00000557466 CDC27P30260 824 aa17.26■□□□□ 0.35
VIPAS39-210ENST00000557466 FLT3LGP49771 235 aa17.26■□□□□ 0.35
VIPAS39-210ENST00000557466 GNAQP50148 359 aa17.26■□□□□ 0.35
VIPAS39-210ENST00000557466 AK2P54819 239 aa17.26■□□□□ 0.35
VIPAS39-210ENST00000557466 PRMT2P55345 433 aa17.26■□□□□ 0.35
VIPAS39-210ENST00000557466 GRB14Q14449 540 aa17.26■□□□□ 0.35
VIPAS39-210ENST00000557466 QRICH1Q2TAL8 776 aa17.26■□□□□ 0.35
VIPAS39-210ENST00000557466 MORN1Q5T089 497 aa17.26■□□□□ 0.35
VIPAS39-210ENST00000557466 CMTR1Q8N1G2 835 aaKnown RBP17.26■□□□□ 0.35
VIPAS39-210ENST00000557466 SRBD1Q8N5C6 995 aaKnown RBP17.26■□□□□ 0.35
VIPAS39-210ENST00000557466 SOCS4Q8WXH5 440 aa17.26■□□□□ 0.35
VIPAS39-210ENST00000557466 TBC1D32Q96NH3 1257 aa17.26■□□□□ 0.35
VIPAS39-210ENST00000557466 SPZ1Q9BXG8 430 aa17.26■□□□□ 0.35
VIPAS39-210ENST00000557466 MCOLN1Q9GZU1 580 aa17.26■□□□□ 0.35
VIPAS39-210ENST00000557466 ALDH8A1Q9H2A2 487 aaPredicted RBP17.26■□□□□ 0.35
VIPAS39-210ENST00000557466 HOMER2Q9NSB8 354 aa17.26■□□□□ 0.35
VIPAS39-210ENST00000557466 RNF146Q9NTX7 359 aa17.26■□□□□ 0.35
VIPAS39-210ENST00000557466 FAM217BQ9NTX9 383 aaPredicted RBP17.26■□□□□ 0.35
VIPAS39-210ENST00000557466 RBM28Q9NW13 759 aaKnown RBP17.26■□□□□ 0.35
VIPAS39-210ENST00000557466 PTCH2Q9Y6C5 1203 aa17.26■□□□□ 0.35
VIPAS39-210ENST00000557466 IVNS1ABPQ9Y6Y0 642 aa17.26■□□□□ 0.35
VIPAS39-210ENST00000557466 CNTNAP5Q8WYK1 1306 aa17.25■□□□□ 0.35
VIPAS39-210ENST00000557466 SLC15A5A6NIM6 579 aa17.25■□□□□ 0.35
VIPAS39-210ENST00000557466 METAP2P50579 478 aaKnown RBP eCLIP17.25■□□□□ 0.35
VIPAS39-210ENST00000557466 NEK4P51957 841 aa17.25■□□□□ 0.35
VIPAS39-210ENST00000557466 PKN2Q16513 984 aaKnown RBP17.25■□□□□ 0.35
VIPAS39-210ENST00000557466 TKFCQ3LXA3 575 aa17.25■□□□□ 0.35
VIPAS39-210ENST00000557466 FBXO46Q6PJ61 603 aaPredicted RBP17.25■□□□□ 0.35
VIPAS39-210ENST00000557466 HOMER1Q86YM7 354 aa17.25■□□□□ 0.35
VIPAS39-210ENST00000557466 USP6NLQ92738 828 aa17.25■□□□□ 0.35
VIPAS39-210ENST00000557466 PIGSQ96S52 555 aa17.25■□□□□ 0.35
VIPAS39-210ENST00000557466 NUDT12Q9BQG2 462 aa17.25■□□□□ 0.35
VIPAS39-210ENST00000557466 LZTS2Q9BRK4 669 aa17.25■□□□□ 0.35
VIPAS39-210ENST00000557466 ZBTB5O15062 677 aa17.24■□□□□ 0.35
VIPAS39-210ENST00000557466 PPP1R11O60927 126 aaPredicted RBP17.24■□□□□ 0.35
VIPAS39-210ENST00000557466 SMARCA1P28370 1054 aa17.24■□□□□ 0.35
VIPAS39-210ENST00000557466 ADORA2AP29274 412 aa17.24■□□□□ 0.35
VIPAS39-210ENST00000557466 PDIA3P30101 505 aaKnown RBP17.24■□□□□ 0.35
VIPAS39-210ENST00000557466 MAP2K5Q13163 448 aa17.24■□□□□ 0.35
VIPAS39-210ENST00000557466 USH1GQ495M9 461 aa17.24■□□□□ 0.35
VIPAS39-210ENST00000557466 MUM1L1Q5H9M0 696 aa17.24■□□□□ 0.35
VIPAS39-210ENST00000557466 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.24■□□□□ 0.35
VIPAS39-210ENST00000557466 CHST13Q8NET6 341 aa17.24■□□□□ 0.35
VIPAS39-210ENST00000557466 PIBF1Q8WXW3 757 aa17.24■□□□□ 0.35
VIPAS39-210ENST00000557466 TRERF1Q96PN7 1200 aa17.24■□□□□ 0.35
VIPAS39-210ENST00000557466 MMP19Q99542 508 aa17.24■□□□□ 0.35
VIPAS39-210ENST00000557466 ACAD9Q9H845 621 aa17.24■□□□□ 0.35
VIPAS39-210ENST00000557466 STRNO43815 780 aa17.23■□□□□ 0.35
VIPAS39-210ENST00000557466 FCER1AP12319 257 aa17.23■□□□□ 0.35
VIPAS39-210ENST00000557466 FUT2Q10981 343 aa17.23■□□□□ 0.35
VIPAS39-210ENST00000557466 IRF5Q13568 498 aa17.23■□□□□ 0.35
VIPAS39-210ENST00000557466 NOL8Q76FK4 1167 aaKnown RBP17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms