RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 DDX11Q96FC9 970 aa8.66□□□□□ -1.02
SCFD1-222ENST00000556768 FAM227BQ96M60 508 aa8.66□□□□□ -1.02
SCFD1-222ENST00000556768 RNF41Q9H4P4 317 aaPredicted RBP8.66□□□□□ -1.02
SCFD1-222ENST00000556768 FBXO28Q9NVF7 368 aa8.66□□□□□ -1.02
SCFD1-222ENST00000556768 ANAPC4Q9UJX5 808 aa8.66□□□□□ -1.02
SCFD1-222ENST00000556768 OGDHLQ9ULD0 1010 aa8.66□□□□□ -1.02
SCFD1-222ENST00000556768 ADAMTS5Q9UNA0 930 aa8.66□□□□□ -1.02
SCFD1-222ENST00000556768 H0YGN5 161 aa8.65□□□□□ -1.02
SCFD1-222ENST00000556768 ZNF213O14771 459 aa8.65□□□□□ -1.02
SCFD1-222ENST00000556768 HSPD1P10809 573 aaKnown RBP8.65□□□□□ -1.02
SCFD1-222ENST00000556768 SDSP20132 328 aa8.65□□□□□ -1.02
SCFD1-222ENST00000556768 CYP2C19P33261 490 aa8.65□□□□□ -1.02
SCFD1-222ENST00000556768 STAT2P52630 851 aa8.65□□□□□ -1.02
SCFD1-222ENST00000556768 CTDSPL2Q05D32 466 aa8.65□□□□□ -1.02
SCFD1-222ENST00000556768 RRP12Q5JTH9 1297 aaKnown RBP8.65□□□□□ -1.02
SCFD1-222ENST00000556768 IER5LQ5T953 404 aa8.65□□□□□ -1.02
SCFD1-222ENST00000556768 VPS53Q5VIR6 699 aa8.65□□□□□ -1.02
SCFD1-222ENST00000556768 MYSM1Q5VVJ2 828 aa8.65□□□□□ -1.02
SCFD1-222ENST00000556768 SNRNP48Q6IEG0 339 aaKnown RBP8.65□□□□□ -1.02
SCFD1-222ENST00000556768 MFSD6Q6ZSS7 791 aa8.65□□□□□ -1.02
SCFD1-222ENST00000556768 UBE2Q1Q7Z7E8 422 aa8.65□□□□□ -1.02
SCFD1-222ENST00000556768 CPXCR1Q8N123 301 aa8.65□□□□□ -1.02
SCFD1-222ENST00000556768 PTCD2Q8WV60 388 aaKnown RBP8.65□□□□□ -1.02
SCFD1-222ENST00000556768 NUP88Q99567 741 aaPredicted RBP8.65□□□□□ -1.02
SCFD1-222ENST00000556768 C11orf49Q9H6J7 331 aa8.65□□□□□ -1.02
SCFD1-222ENST00000556768 FBXO40Q9UH90 709 aa8.65□□□□□ -1.02
SCFD1-222ENST00000556768 CCDC171Q6TFL3 1326 aa8.65□□□□□ -1.03
SCFD1-222ENST00000556768 MYH1P12882 1939 aa8.64□□□□□ -1.03
SCFD1-222ENST00000556768 IGKV6D-41A0A0C4DH26 115 aa8.64□□□□□ -1.03
SCFD1-222ENST00000556768 A0A0D9SFI3 127 aa8.64□□□□□ -1.03
SCFD1-222ENST00000556768 TMEM232C9JQI7 657 aa8.64□□□□□ -1.03
SCFD1-222ENST00000556768 CCND3P30281 292 aaPredicted RBP8.64□□□□□ -1.03
SCFD1-222ENST00000556768 NT5C2P49902 561 aa8.64□□□□□ -1.03
SCFD1-222ENST00000556768 ATN1P54259 1190 aaPredicted RBP8.64□□□□□ -1.03
SCFD1-222ENST00000556768 NMIQ13287 307 aaPredicted RBP8.64□□□□□ -1.03
SCFD1-222ENST00000556768 CWC27Q6UX04 472 aaKnown RBP8.64□□□□□ -1.03
SCFD1-222ENST00000556768 FAM160B2Q86V87 743 aa8.64□□□□□ -1.03
SCFD1-222ENST00000556768 LRRC47Q8N1G4 583 aaKnown RBP8.64□□□□□ -1.03
SCFD1-222ENST00000556768 ARRDC4Q8NCT1 418 aa8.64□□□□□ -1.03
SCFD1-222ENST00000556768 BANK1Q8NDB2 785 aa8.64□□□□□ -1.03
SCFD1-222ENST00000556768 DDX20Q9UHI6 824 aaKnown RBP8.64□□□□□ -1.03
SCFD1-222ENST00000556768 CTNNA3Q9UI47 895 aa8.64□□□□□ -1.03
SCFD1-222ENST00000556768 CNPY2Q9Y2B0 182 aa8.64□□□□□ -1.03
SCFD1-222ENST00000556768 DIS3Q9Y2L1 958 aaKnown RBP8.64□□□□□ -1.03
SCFD1-222ENST00000556768 PHIPQ8WWQ0 1821 aa8.64□□□□□ -1.03
SCFD1-222ENST00000556768 MYO5AQ9Y4I1 1855 aaKnown RBP8.64□□□□□ -1.03
SCFD1-222ENST00000556768 LOC285556D6RIA3 1793 aa8.64□□□□□ -1.03
SCFD1-222ENST00000556768 ATP2A1O14983 1001 aa8.64□□□□□ -1.03
SCFD1-222ENST00000556768 ORC4O43929 436 aa8.64□□□□□ -1.03
SCFD1-222ENST00000556768 MCCP23508 829 aa8.64□□□□□ -1.03
SCFD1-222ENST00000556768 OAZ1P54368 228 aa8.64□□□□□ -1.03
SCFD1-222ENST00000556768 ANKRD35Q8N283 1001 aa8.64□□□□□ -1.03
SCFD1-222ENST00000556768 NPLOC4Q8TAT6 608 aa8.64□□□□□ -1.03
SCFD1-222ENST00000556768 ESR2Q92731 530 aa8.64□□□□□ -1.03
SCFD1-222ENST00000556768 GMCL1Q96IK5 515 aa8.64□□□□□ -1.03
SCFD1-222ENST00000556768 EPAS1Q99814 870 aa8.64□□□□□ -1.03
SCFD1-222ENST00000556768 NRBP1Q9UHY1 535 aa8.64□□□□□ -1.03
SCFD1-222ENST00000556768 ZNF214Q9UL59 606 aaPredicted RBP8.64□□□□□ -1.03
SCFD1-222ENST00000556768 SIPA1L1O43166 1804 aa8.63□□□□□ -1.03
SCFD1-222ENST00000556768 FOCADQ5VW36 1801 aa8.63□□□□□ -1.03
SCFD1-222ENST00000556768 SEPT4O43236 478 aa8.63□□□□□ -1.03
SCFD1-222ENST00000556768 COBLO75128 1261 aa8.63□□□□□ -1.03
SCFD1-222ENST00000556768 IMMTQ16891 758 aaKnown RBP8.63□□□□□ -1.03
SCFD1-222ENST00000556768 CCDC178Q5BJE1 867 aa8.63□□□□□ -1.03
SCFD1-222ENST00000556768 HABP4Q5JVS0 413 aaKnown RBP8.63□□□□□ -1.03
SCFD1-222ENST00000556768 AKNAD1Q5T1N1 836 aa8.63□□□□□ -1.03
SCFD1-222ENST00000556768 LHX8Q68G74 356 aa8.63□□□□□ -1.03
SCFD1-222ENST00000556768 RCSD1Q6JBY9 416 aa8.63□□□□□ -1.03
SCFD1-222ENST00000556768 IQCA1Q86XH1 822 aa8.63□□□□□ -1.03
SCFD1-222ENST00000556768 MSL3Q8N5Y2 521 aaKnown RBP8.63□□□□□ -1.03
SCFD1-222ENST00000556768 CHST13Q8NET6 341 aa8.63□□□□□ -1.03
SCFD1-222ENST00000556768 STAG1Q8WVM7 1258 aa8.63□□□□□ -1.03
SCFD1-222ENST00000556768 RUFY2Q8WXA3 655 aa8.63□□□□□ -1.03
SCFD1-222ENST00000556768 MAML3Q96JK9 1138 aa8.63□□□□□ -1.03
SCFD1-222ENST00000556768 TTC14Q96N46 770 aa8.63□□□□□ -1.03
SCFD1-222ENST00000556768 SLC38A10Q9HBR0 1119 aa8.63□□□□□ -1.03
SCFD1-222ENST00000556768 FLRT1Q9NZU1 646 aa8.63□□□□□ -1.03
SCFD1-222ENST00000556768 MTMR7Q9Y216 660 aa8.63□□□□□ -1.03
SCFD1-222ENST00000556768 ZMYM6O95789 1325 aa8.63□□□□□ -1.03
SCFD1-222ENST00000556768 CEP290O15078 2479 aa8.62□□□□□ -1.03
SCFD1-222ENST00000556768 PLIN4Q96Q06 1357 aa8.62□□□□□ -1.03
SCFD1-222ENST00000556768 KBTBD13C9JR72 458 aa8.62□□□□□ -1.03
SCFD1-222ENST00000556768 MAP3K7O43318 606 aa8.62□□□□□ -1.03
SCFD1-222ENST00000556768 PLA2G6O60733 806 aa8.62□□□□□ -1.03
SCFD1-222ENST00000556768 PGK2P07205 417 aa8.62□□□□□ -1.03
SCFD1-222ENST00000556768 FGRP09769 529 aa8.62□□□□□ -1.03
SCFD1-222ENST00000556768 TOP1P11387 765 aaKnown RBP8.62□□□□□ -1.03
SCFD1-222ENST00000556768 HAND2P61296 217 aa8.62□□□□□ -1.03
SCFD1-222ENST00000556768 METTL3Q86U44 580 aaKnown RBP8.62□□□□□ -1.03
SCFD1-222ENST00000556768 ZNF589Q86UQ0 364 aaPredicted RBP8.62□□□□□ -1.03
SCFD1-222ENST00000556768 TINF2Q9BSI4 451 aa8.62□□□□□ -1.03
SCFD1-222ENST00000556768 SENP6Q9GZR1 1112 aaPredicted RBP8.62□□□□□ -1.03
SCFD1-222ENST00000556768 RAVER2Q9HCJ3 691 aaKnown RBP8.62□□□□□ -1.03
SCFD1-222ENST00000556768 TCP11L1Q9NUJ3 509 aa8.62□□□□□ -1.03
SCFD1-222ENST00000556768 PNMA2Q9UL42 364 aa8.62□□□□□ -1.03
SCFD1-222ENST00000556768 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.62□□□□□ -1.03
SCFD1-222ENST00000556768 PTPRFP10586 1907 aa8.62□□□□□ -1.03
SCFD1-222ENST00000556768 ATAD5Q96QE3 1844 aa8.61□□□□□ -1.03
SCFD1-222ENST00000556768 DNM1LO00429 736 aa8.61□□□□□ -1.03
SCFD1-222ENST00000556768 FOXP2O15409 715 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms