RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 PHF20Q9BVI0 1012 aa13.58□□□□□ -0.23
CCDC88C-211ENST00000556726 PKD2L1Q9P0L9 805 aa13.58□□□□□ -0.23
CCDC88C-211ENST00000556726 DDAH1O94760 285 aa13.58□□□□□ -0.24
CCDC88C-211ENST00000556726 GNA11P29992 359 aa13.58□□□□□ -0.24
CCDC88C-211ENST00000556726 ST5P78524 1137 aa13.58□□□□□ -0.24
CCDC88C-211ENST00000556726 DPP8Q6V1X1 898 aaPredicted RBP13.58□□□□□ -0.24
CCDC88C-211ENST00000556726 SRGAP1Q7Z6B7 1085 aa13.58□□□□□ -0.24
CCDC88C-211ENST00000556726 CNOT6LQ96LI5 555 aaKnown RBP13.58□□□□□ -0.24
CCDC88C-211ENST00000556726 TSG101Q99816 390 aa13.58□□□□□ -0.24
CCDC88C-211ENST00000556726 MYO6Q9UM54 1294 aa13.58□□□□□ -0.24
CCDC88C-211ENST00000556726 POTEMA6NI47 508 aa13.58□□□□□ -0.24
CCDC88C-211ENST00000556726 UBAP1LF5GYI3 381 aa13.58□□□□□ -0.24
CCDC88C-211ENST00000556726 TUBB4AP04350 444 aa13.58□□□□□ -0.24
CCDC88C-211ENST00000556726 PRPF4BQ13523 1007 aaKnown RBP13.58□□□□□ -0.24
CCDC88C-211ENST00000556726 TCP11X2Q5H9J9 407 aa13.58□□□□□ -0.24
CCDC88C-211ENST00000556726 FCHSD1Q86WN1 690 aa13.58□□□□□ -0.24
CCDC88C-211ENST00000556726 ABCB6Q9NP58 842 aa13.58□□□□□ -0.24
CCDC88C-211ENST00000556726 ATP8A2Q9NTI2 1148 aa13.58□□□□□ -0.24
CCDC88C-211ENST00000556726 ZNF446Q9NWS9 450 aa13.58□□□□□ -0.24
CCDC88C-211ENST00000556726 PCDHA4Q9UN74 947 aa13.58□□□□□ -0.24
CCDC88C-211ENST00000556726 MORC2Q9Y6X9 1032 aaPredicted RBP13.58□□□□□ -0.24
CCDC88C-211ENST00000556726 GSTO1P78417 241 aa13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 RAPGEF1Q13905 1077 aa13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 CALCRLQ16602 461 aa13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 KCTD19Q17RG1 926 aaPredicted RBP13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 KCTD1Q719H9 257 aa13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 TMEM47Q9BQJ4 181 aa13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 RAB34Q9BZG1 259 aa13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 CWC15Q9P013 229 aaKnown RBP13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 BCCIPQ9P287 314 aaKnown RBP eCLIP13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 ADAMTS3O15072 1205 aa13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 GYPCP04921 128 aa13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 PAFAH1B1P43034 410 aa13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 DPYDQ12882 1025 aa13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 NR1I3Q14994 352 aa13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 PPP2R5BQ15173 497 aa13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 ZYXQ15942 572 aaKnown RBP13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 TXNRD1Q16881 649 aa13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 DCAF17Q5H9S7 520 aaPredicted RBP13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 LINC00116Q8NCU8 138 aa13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 WDR66Q8TBY9 1149 aa13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 RIOK1Q9BRS2 568 aaKnown RBP13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 ZC3H12CQ9C0D7 883 aaKnown RBP13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 GBP3Q9H0R5 595 aa13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 COL5A2P05997 1499 aaPredicted RBP13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 PNPLA7Q6ZV29 1317 aa13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 OR52Z1P0C646 297 aa13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 CC2D1AQ6P1N0 951 aaPredicted RBP13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 TRIM65Q6PJ69 517 aa13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 HDXQ7Z353 690 aa13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 KLHL34Q8N239 644 aa13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 DISC1Q9NRI5 854 aa13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 ABHD10Q9NUJ1 306 aa13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 ADD3Q9UEY8 706 aaKnown RBP13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 PRDM4Q9UKN5 801 aa13.57□□□□□ -0.24
CCDC88C-211ENST00000556726 CHMP2AO43633 222 aa13.56□□□□□ -0.24
CCDC88C-211ENST00000556726 KRT83P78385 493 aa13.56□□□□□ -0.24
CCDC88C-211ENST00000556726 CCDC43Q96MW1 224 aaKnown RBP13.56□□□□□ -0.24
CCDC88C-211ENST00000556726 PYM1Q9BRP8 204 aaKnown RBP13.56□□□□□ -0.24
CCDC88C-211ENST00000556726 FAN1Q9Y2M0 1017 aa13.56□□□□□ -0.24
CCDC88C-211ENST00000556726 XDHP47989 1333 aa13.56□□□□□ -0.24
CCDC88C-211ENST00000556726 FAM205AQ6ZU69 1335 aa13.56□□□□□ -0.24
CCDC88C-211ENST00000556726 KIF13AQ9H1H9 1805 aa13.56□□□□□ -0.24
CCDC88C-211ENST00000556726 SLURP2P0DP57 97 aa13.56□□□□□ -0.24
CCDC88C-211ENST00000556726 SEC23AQ15436 765 aa13.56□□□□□ -0.24
CCDC88C-211ENST00000556726 PFKFB3Q16875 520 aaPredicted RBP13.56□□□□□ -0.24
CCDC88C-211ENST00000556726 HERC4Q5GLZ8 1057 aaPredicted RBP13.56□□□□□ -0.24
CCDC88C-211ENST00000556726 ZNF658Q5TYW1 1059 aaPredicted RBP13.56□□□□□ -0.24
CCDC88C-211ENST00000556726 MAEAQ7L5Y9 396 aa13.56□□□□□ -0.24
CCDC88C-211ENST00000556726 SPAG5Q96R06 1193 aa13.56□□□□□ -0.24
CCDC88C-211ENST00000556726 BRIP1Q9BX63 1249 aa13.56□□□□□ -0.24
CCDC88C-211ENST00000556726 HSD3B7Q9H2F3 369 aa13.56□□□□□ -0.24
CCDC88C-211ENST00000556726 AGPAT5Q9NUQ2 364 aa13.56□□□□□ -0.24
CCDC88C-211ENST00000556726 GGA1Q9UJY5 639 aa13.56□□□□□ -0.24
CCDC88C-211ENST00000556726 SAR1BQ9Y6B6 198 aa13.56□□□□□ -0.24
CCDC88C-211ENST00000556726 NDUFA10O95299 355 aa13.56□□□□□ -0.24
CCDC88C-211ENST00000556726 USP17L5A8MUK1 530 aa13.55□□□□□ -0.24
CCDC88C-211ENST00000556726 SLC7A5Q01650 507 aa13.55□□□□□ -0.24
CCDC88C-211ENST00000556726 FAM114A1Q8IWE2 563 aa13.55□□□□□ -0.24
CCDC88C-211ENST00000556726 RABGGTAQ92696 567 aa13.55□□□□□ -0.24
CCDC88C-211ENST00000556726 A0A1B0GTH6 734 aa13.55□□□□□ -0.24
CCDC88C-211ENST00000556726 PPP1R3GB7ZBB8 358 aa13.55□□□□□ -0.24
CCDC88C-211ENST00000556726 TACC1O75410 805 aa13.55□□□□□ -0.24
CCDC88C-211ENST00000556726 USP8P40818 1118 aa13.55□□□□□ -0.24
CCDC88C-211ENST00000556726 ATP2C1P98194 919 aaPredicted RBP13.55□□□□□ -0.24
CCDC88C-211ENST00000556726 NEK8Q86SG6 692 aa13.55□□□□□ -0.24
CCDC88C-211ENST00000556726 ZNF579Q8NAF0 562 aaKnown RBP13.55□□□□□ -0.24
CCDC88C-211ENST00000556726 IFIH1Q9BYX4 1025 aaKnown RBP13.55□□□□□ -0.24
CCDC88C-211ENST00000556726 SMARCAL1Q9NZC9 954 aa13.55□□□□□ -0.24
CCDC88C-211ENST00000556726 MRFAP1Q9Y605 127 aa13.55□□□□□ -0.24
CCDC88C-211ENST00000556726 H7C1D1 291 aa13.54□□□□□ -0.24
CCDC88C-211ENST00000556726 ZNF185O15231 689 aa13.54□□□□□ -0.24
CCDC88C-211ENST00000556726 LONP1P36776 959 aaKnown RBP13.54□□□□□ -0.24
CCDC88C-211ENST00000556726 MAGEA1P43355 309 aa13.54□□□□□ -0.24
CCDC88C-211ENST00000556726 HNRNPH2P55795 449 aaKnown RBP13.54□□□□□ -0.24
CCDC88C-211ENST00000556726 CYP4A11Q02928 519 aa13.54□□□□□ -0.24
CCDC88C-211ENST00000556726 C2orf54Q08AI8 447 aa13.54□□□□□ -0.24
CCDC88C-211ENST00000556726 KIAA0825Q8IV33 1275 aa13.54□□□□□ -0.24
CCDC88C-211ENST00000556726 NOA1Q8NC60 698 aaKnown RBP13.54□□□□□ -0.24
CCDC88C-211ENST00000556726 ZNF512BQ96KM6 892 aaPredicted RBP13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms