RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 PCP11498 1178 aaKnown RBP10.65□□□□□ -0.7
SYNE2-213ENST00000554805 MATR3P43243 847 aaKnown RBP eCLIP10.65□□□□□ -0.7
SYNE2-213ENST00000554805 PMS1P54277 932 aaKnown RBP10.65□□□□□ -0.7
SYNE2-213ENST00000554805 CYP27A1Q02318 531 aa10.65□□□□□ -0.7
SYNE2-213ENST00000554805 ITPK1Q13572 414 aa10.65□□□□□ -0.7
SYNE2-213ENST00000554805 SPA17Q15506 151 aa10.65□□□□□ -0.7
SYNE2-213ENST00000554805 ARL6IP4Q66PJ3 421 aaKnown RBP10.65□□□□□ -0.7
SYNE2-213ENST00000554805 CCDC70Q6NSX1 233 aa10.65□□□□□ -0.7
SYNE2-213ENST00000554805 PTF1AQ7RTS3 328 aa10.65□□□□□ -0.7
SYNE2-213ENST00000554805 ADSSL1Q8N142 457 aa10.65□□□□□ -0.7
SYNE2-213ENST00000554805 HNRNPLLQ8WVV9 542 aaKnown RBP10.65□□□□□ -0.7
SYNE2-213ENST00000554805 NSUN4Q96CB9 384 aaKnown RBP10.65□□□□□ -0.7
SYNE2-213ENST00000554805 TUBGCP2Q9BSJ2 902 aa10.65□□□□□ -0.7
SYNE2-213ENST00000554805 CRACR2AQ9BSW2 395 aa10.65□□□□□ -0.7
SYNE2-213ENST00000554805 RAB21Q9UL25 225 aa10.65□□□□□ -0.7
SYNE2-213ENST00000554805 LRRC10BA6NIK2 292 aa10.64□□□□□ -0.71
SYNE2-213ENST00000554805 ERCC3P19447 782 aa10.64□□□□□ -0.71
SYNE2-213ENST00000554805 ACTN2P35609 894 aa10.64□□□□□ -0.71
SYNE2-213ENST00000554805 CCDC96Q2M329 555 aa10.64□□□□□ -0.71
SYNE2-213ENST00000554805 MAP9Q49MG5 647 aa10.64□□□□□ -0.71
SYNE2-213ENST00000554805 FKBP15Q5T1M5 1219 aa10.64□□□□□ -0.71
SYNE2-213ENST00000554805 NOC4LQ9BVI4 516 aaKnown RBP10.64□□□□□ -0.71
SYNE2-213ENST00000554805 CPVLQ9H3G5 476 aa10.64□□□□□ -0.71
SYNE2-213ENST00000554805 USP17L3A6NCW0 530 aa10.64□□□□□ -0.71
SYNE2-213ENST00000554805 USP17L4A6NCW7 530 aa10.64□□□□□ -0.71
SYNE2-213ENST00000554805 ORC4O43929 436 aa10.64□□□□□ -0.71
SYNE2-213ENST00000554805 TUBBP07437 444 aa10.64□□□□□ -0.71
SYNE2-213ENST00000554805 IDEP14735 1019 aa10.64□□□□□ -0.71
SYNE2-213ENST00000554805 DNM2P50570 870 aa10.64□□□□□ -0.71
SYNE2-213ENST00000554805 NAP1L1P55209 391 aaKnown RBP10.64□□□□□ -0.71
SYNE2-213ENST00000554805 USP17L1Q7RTZ2 530 aa10.64□□□□□ -0.71
SYNE2-213ENST00000554805 CABP7Q86V35 215 aa10.64□□□□□ -0.71
SYNE2-213ENST00000554805 GOLGA5Q8TBA6 731 aa10.64□□□□□ -0.71
SYNE2-213ENST00000554805 MMS19Q96T76 1030 aa10.64□□□□□ -0.71
SYNE2-213ENST00000554805 ATP8A2Q9NTI2 1148 aa10.64□□□□□ -0.71
SYNE2-213ENST00000554805 AGPAT5Q9NUQ2 364 aa10.64□□□□□ -0.71
SYNE2-213ENST00000554805 BSDC1Q9NW68 430 aaPredicted RBP10.64□□□□□ -0.71
SYNE2-213ENST00000554805 ARPP21Q9UBL0 812 aaPredicted RBP10.64□□□□□ -0.71
SYNE2-213ENST00000554805 EEF1GP26641 437 aaKnown RBP10.64□□□□□ -0.71
SYNE2-213ENST00000554805 KLK7P49862 253 aa10.64□□□□□ -0.71
SYNE2-213ENST00000554805 NAPAP54920 295 aa10.64□□□□□ -0.71
SYNE2-213ENST00000554805 RPS8P62241 208 aaKnown RBP10.64□□□□□ -0.71
SYNE2-213ENST00000554805 SOGA3Q5TF21 947 aa10.64□□□□□ -0.71
SYNE2-213ENST00000554805 CCDC42Q96M95 316 aa10.64□□□□□ -0.71
SYNE2-213ENST00000554805 TRIM34Q9BYJ4 488 aa10.64□□□□□ -0.71
SYNE2-213ENST00000554805 RSPH14Q9UHP6 348 aa10.64□□□□□ -0.71
SYNE2-213ENST00000554805 SAP30BPQ9UHR5 308 aaKnown RBP10.64□□□□□ -0.71
SYNE2-213ENST00000554805 USP21Q9UK80 565 aa10.64□□□□□ -0.71
SYNE2-213ENST00000554805 UBR2Q8IWV8 1755 aa10.63□□□□□ -0.71
SYNE2-213ENST00000554805 VGLL3A8MV65 326 aa10.63□□□□□ -0.71
SYNE2-213ENST00000554805 GNAQP50148 359 aa10.63□□□□□ -0.71
SYNE2-213ENST00000554805 CKAP4Q07065 602 aaKnown RBP10.63□□□□□ -0.71
SYNE2-213ENST00000554805 KIF5AQ12840 1032 aa10.63□□□□□ -0.71
SYNE2-213ENST00000554805 EHBP1Q8NDI1 1231 aa10.63□□□□□ -0.71
SYNE2-213ENST00000554805 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.63□□□□□ -0.71
SYNE2-213ENST00000554805 REXO2Q9Y3B8 237 aaKnown RBP10.63□□□□□ -0.71
SYNE2-213ENST00000554805 EP400Q96L91 3159 aa10.63□□□□□ -0.71
SYNE2-213ENST00000554805 CCNT1O60563 726 aaKnown RBP10.63□□□□□ -0.71
SYNE2-213ENST00000554805 IRF2BP1Q8IU81 584 aa10.63□□□□□ -0.71
SYNE2-213ENST00000554805 GSPT2Q8IYD1 628 aaKnown RBP10.63□□□□□ -0.71
SYNE2-213ENST00000554805 ZNF384Q8TF68 577 aa10.63□□□□□ -0.71
SYNE2-213ENST00000554805 CNOT6LQ96LI5 555 aaKnown RBP10.63□□□□□ -0.71
SYNE2-213ENST00000554805 PSMB7Q99436 277 aa10.63□□□□□ -0.71
SYNE2-213ENST00000554805 MMRN2Q9H8L6 949 aa10.63□□□□□ -0.71
SYNE2-213ENST00000554805 ZNF804BA4D1E1 1349 aa10.63□□□□□ -0.71
SYNE2-213ENST00000554805 PLCG1P19174 1290 aa10.63□□□□□ -0.71
SYNE2-213ENST00000554805 FAM114A1Q8IWE2 563 aa10.63□□□□□ -0.71
SYNE2-213ENST00000554805 FAM71BQ8TC56 605 aa10.63□□□□□ -0.71
SYNE2-213ENST00000554805 CDK5RAP3Q96JB5 506 aa10.63□□□□□ -0.71
SYNE2-213ENST00000554805 NLRP3Q96P20 1036 aa10.63□□□□□ -0.71
SYNE2-213ENST00000554805 TANGO6Q9C0B7 1094 aa10.63□□□□□ -0.71
SYNE2-213ENST00000554805 THAP9Q9H5L6 903 aa10.63□□□□□ -0.71
SYNE2-213ENST00000554805 FAM204AQ9H8W3 233 aa10.63□□□□□ -0.71
SYNE2-213ENST00000554805 LRRIQ3A6PVS8 624 aaPredicted RBP10.62□□□□□ -0.71
SYNE2-213ENST00000554805 MARCH6O60337 910 aa10.62□□□□□ -0.71
SYNE2-213ENST00000554805 MCM3P25205 808 aa10.62□□□□□ -0.71
SYNE2-213ENST00000554805 HSPA1LP34931 641 aa10.62□□□□□ -0.71
SYNE2-213ENST00000554805 DNA2P51530 1060 aa10.62□□□□□ -0.71
SYNE2-213ENST00000554805 USP14P54578 494 aa10.62□□□□□ -0.71
SYNE2-213ENST00000554805 SLC44A5Q8NCS7 719 aa10.62□□□□□ -0.71
SYNE2-213ENST00000554805 SMARCC1Q92922 1105 aaPredicted RBP10.62□□□□□ -0.71
SYNE2-213ENST00000554805 NHEJ1Q9H9Q4 299 aaPredicted RBP10.62□□□□□ -0.71
SYNE2-213ENST00000554805 CAPN11Q9UMQ6 739 aa10.62□□□□□ -0.71
SYNE2-213ENST00000554805 BICDL2A1A5D9 508 aa10.62□□□□□ -0.71
SYNE2-213ENST00000554805 ZNF185O15231 689 aa10.62□□□□□ -0.71
SYNE2-213ENST00000554805 AKR1B10O60218 316 aa10.62□□□□□ -0.71
SYNE2-213ENST00000554805 USO1O60763 962 aaKnown RBP10.62□□□□□ -0.71
SYNE2-213ENST00000554805 TECP42680 631 aa10.62□□□□□ -0.71
SYNE2-213ENST00000554805 HERVK_113P62684 666 aa10.62□□□□□ -0.71
SYNE2-213ENST00000554805 MRPS25P82663 173 aaKnown RBP10.62□□□□□ -0.71
SYNE2-213ENST00000554805 TYW1BQ6NUM6 668 aa10.62□□□□□ -0.71
SYNE2-213ENST00000554805 NBPF5PQ86XG9 351 aaPredicted RBP10.62□□□□□ -0.71
SYNE2-213ENST00000554805 P2RX5Q93086 422 aa10.62□□□□□ -0.71
SYNE2-213ENST00000554805 HPS3Q969F9 1004 aa10.62□□□□□ -0.71
SYNE2-213ENST00000554805 LACRTQ9GZZ8 138 aa10.62□□□□□ -0.71
SYNE2-213ENST00000554805 PLEKHA4Q9H4M7 779 aa10.62□□□□□ -0.71
SYNE2-213ENST00000554805 FAM207AQ9NSI2 230 aaPredicted RBP10.62□□□□□ -0.71
SYNE2-213ENST00000554805 ANKIB1Q9P2G1 1089 aa10.62□□□□□ -0.71
SYNE2-213ENST00000554805 PCDHA6Q9UN73 950 aa10.62□□□□□ -0.71
SYNE2-213ENST00000554805 PCDHA8Q9Y5H6 950 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms