RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 ZNF536O15090 1300 aa12.56□□□□□ -0.4
SHMT2-215ENST00000554656 NMT2O60551 498 aa12.55□□□□□ -0.4
SHMT2-215ENST00000554656 TSPY3P0CV98 308 aa12.55□□□□□ -0.4
SHMT2-215ENST00000554656 TSPY8P0CW00 308 aa12.55□□□□□ -0.4
SHMT2-215ENST00000554656 BMP3P12645 472 aa12.55□□□□□ -0.4
SHMT2-215ENST00000554656 ACLYP53396 1101 aa12.55□□□□□ -0.4
SHMT2-215ENST00000554656 CNTN2Q02246 1040 aa12.55□□□□□ -0.4
SHMT2-215ENST00000554656 CTDSPL2Q05D32 466 aa12.55□□□□□ -0.4
SHMT2-215ENST00000554656 FAM161BQ96MY7 647 aa12.55□□□□□ -0.4
SHMT2-215ENST00000554656 NACAP1Q9BZK3 213 aa12.55□□□□□ -0.4
SHMT2-215ENST00000554656 ZNF287Q9HBT7 754 aa12.55□□□□□ -0.4
SHMT2-215ENST00000554656 IL17RBQ9NRM6 502 aa12.55□□□□□ -0.4
SHMT2-215ENST00000554656 HOMER2Q9NSB8 354 aa12.55□□□□□ -0.4
SHMT2-215ENST00000554656 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-215ENST00000554656 ZHX1Q9UKY1 873 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-215ENST00000554656 DDX49Q9Y6V7 483 aaKnown RBP12.55□□□□□ -0.4
SHMT2-215ENST00000554656 ASTN1O14525 1302 aa12.55□□□□□ -0.4
SHMT2-215ENST00000554656 PRUNE2Q8WUY3 3088 aa12.54□□□□□ -0.4
SHMT2-215ENST00000554656 LAMA4Q16363 1823 aa12.54□□□□□ -0.4
SHMT2-215ENST00000554656 TMEM232C9JQI7 657 aa12.54□□□□□ -0.4
SHMT2-215ENST00000554656 DLL1O00548 723 aa12.54□□□□□ -0.4
SHMT2-215ENST00000554656 KIAA0355O15063 1070 aa12.54□□□□□ -0.4
SHMT2-215ENST00000554656 CTAGE5O15320 804 aa12.54□□□□□ -0.4
SHMT2-215ENST00000554656 PQBP1O60828 265 aaKnown RBP12.54□□□□□ -0.4
SHMT2-215ENST00000554656 CLTBP09497 229 aa12.54□□□□□ -0.4
SHMT2-215ENST00000554656 OAZ1P54368 228 aa12.54□□□□□ -0.4
SHMT2-215ENST00000554656 PDE4BQ07343 736 aa12.54□□□□□ -0.4
SHMT2-215ENST00000554656 ACVR2BQ13705 512 aa12.54□□□□□ -0.4
SHMT2-215ENST00000554656 KCNA10Q16322 511 aa12.54□□□□□ -0.4
SHMT2-215ENST00000554656 LRRFIP1Q32MZ4 808 aaKnown RBP12.54□□□□□ -0.4
SHMT2-215ENST00000554656 CCDC144BQ3MJ40 725 aa12.54□□□□□ -0.4
SHMT2-215ENST00000554656 ARMCX2Q7L311 632 aa12.54□□□□□ -0.4
SHMT2-215ENST00000554656 FAM133AQ8N9E0 248 aa12.54□□□□□ -0.4
SHMT2-215ENST00000554656 CHST13Q8NET6 341 aa12.54□□□□□ -0.4
SHMT2-215ENST00000554656 GMCL1Q96IK5 515 aa12.54□□□□□ -0.4
SHMT2-215ENST00000554656 AGBL1Q96MI9 1066 aa12.54□□□□□ -0.4
SHMT2-215ENST00000554656 TSEN34Q9BSV6 310 aaKnown RBP12.54□□□□□ -0.4
SHMT2-215ENST00000554656 UPF3AQ9H1J1 476 aaKnown RBP12.54□□□□□ -0.4
SHMT2-215ENST00000554656 FAM184BQ9ULE4 1060 aa12.54□□□□□ -0.4
SHMT2-215ENST00000554656 SOWAHBA6NEL2 793 aa12.53□□□□□ -0.4
SHMT2-215ENST00000554656 DUSP11O75319 330 aaKnown RBP12.53□□□□□ -0.4
SHMT2-215ENST00000554656 PTGS1P23219 599 aa12.53□□□□□ -0.4
SHMT2-215ENST00000554656 MCCP23508 829 aa12.53□□□□□ -0.4
SHMT2-215ENST00000554656 CST5P28325 142 aaPredicted RBP12.53□□□□□ -0.4
SHMT2-215ENST00000554656 NOVP48745 357 aa12.53□□□□□ -0.4
SHMT2-215ENST00000554656 STAT2P52630 851 aa12.53□□□□□ -0.4
SHMT2-215ENST00000554656 SNAP25P60880 206 aa12.53□□□□□ -0.4
SHMT2-215ENST00000554656 FAAP100Q0VG06 881 aa12.53□□□□□ -0.4
SHMT2-215ENST00000554656 KCTD1Q719H9 257 aa12.53□□□□□ -0.4
SHMT2-215ENST00000554656 ANKRD33Q7Z3H0 272 aa12.53□□□□□ -0.4
SHMT2-215ENST00000554656 CCDC144CPQ8IYA2 1237 aa12.53□□□□□ -0.4
SHMT2-215ENST00000554656 ANKRD35Q8N283 1001 aa12.53□□□□□ -0.4
SHMT2-215ENST00000554656 A1CFQ9NQ94 594 aaKnown RBP12.53□□□□□ -0.4
SHMT2-215ENST00000554656 RNF146Q9NTX7 359 aa12.53□□□□□ -0.4
SHMT2-215ENST00000554656 FBXO40Q9UH90 709 aa12.53□□□□□ -0.4
SHMT2-215ENST00000554656 CTDP1Q9Y5B0 961 aaPredicted RBP12.53□□□□□ -0.4
SHMT2-215ENST00000554656 A0A0D9SFI3 127 aa12.52□□□□□ -0.41
SHMT2-215ENST00000554656 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.52□□□□□ -0.41
SHMT2-215ENST00000554656 MOXD2PA6NHM9 499 aa12.52□□□□□ -0.41
SHMT2-215ENST00000554656 PDE1AP54750 535 aa12.52□□□□□ -0.41
SHMT2-215ENST00000554656 NUCB1Q02818 461 aa12.52□□□□□ -0.41
SHMT2-215ENST00000554656 MUM1L1Q5H9M0 696 aa12.52□□□□□ -0.41
SHMT2-215ENST00000554656 ANKRD45Q5TZF3 282 aa12.52□□□□□ -0.41
SHMT2-215ENST00000554656 FAM160B2Q86V87 743 aa12.52□□□□□ -0.41
SHMT2-215ENST00000554656 STAG1Q8WVM7 1258 aa12.52□□□□□ -0.41
SHMT2-215ENST00000554656 FAM227BQ96M60 508 aa12.52□□□□□ -0.41
SHMT2-215ENST00000554656 TTYH1Q9H313 450 aaPredicted RBP12.52□□□□□ -0.41
SHMT2-215ENST00000554656 ABHD16BQ9H3Z7 469 aa12.52□□□□□ -0.41
SHMT2-215ENST00000554656 ACAD9Q9H845 621 aa12.52□□□□□ -0.41
SHMT2-215ENST00000554656 STARD7Q9NQZ5 370 aa12.52□□□□□ -0.41
SHMT2-215ENST00000554656 ANAPC4Q9UJX5 808 aa12.52□□□□□ -0.41
SHMT2-215ENST00000554656 TBX21Q9UL17 535 aa12.52□□□□□ -0.41
SHMT2-215ENST00000554656 ISY1Q9ULR0 285 aaKnown RBP12.52□□□□□ -0.41
SHMT2-215ENST00000554656 GBF1Q92538 1859 aa12.51□□□□□ -0.41
SHMT2-215ENST00000554656 TSPY2A6NKD2 308 aa12.51□□□□□ -0.41
SHMT2-215ENST00000554656 ORC4O43929 436 aa12.51□□□□□ -0.41
SHMT2-215ENST00000554656 PLA2G6O60733 806 aa12.51□□□□□ -0.41
SHMT2-215ENST00000554656 ASGR1P07306 291 aa12.51□□□□□ -0.41
SHMT2-215ENST00000554656 SLC3A2P08195 630 aaKnown RBP12.51□□□□□ -0.41
SHMT2-215ENST00000554656 FGRP09769 529 aa12.51□□□□□ -0.41
SHMT2-215ENST00000554656 C6orf222P0C671 652 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-215ENST00000554656 FDX1P10109 184 aa12.51□□□□□ -0.41
SHMT2-215ENST00000554656 SLC1A4P43007 532 aa12.51□□□□□ -0.41
SHMT2-215ENST00000554656 CDK7P50613 346 aa12.51□□□□□ -0.41
SHMT2-215ENST00000554656 GJA9P57773 515 aa12.51□□□□□ -0.41
SHMT2-215ENST00000554656 SMAD3P84022 425 aaKnown RBP12.51□□□□□ -0.41
SHMT2-215ENST00000554656 ALX1Q15699 326 aa12.51□□□□□ -0.41
SHMT2-215ENST00000554656 ZNF697Q5TEC3 545 aa12.51□□□□□ -0.41
SHMT2-215ENST00000554656 CCDC174Q6PII3 467 aa12.51□□□□□ -0.41
SHMT2-215ENST00000554656 ZNF589Q86UQ0 364 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-215ENST00000554656 CHURC1Q8WUH1 139 aa12.51□□□□□ -0.41
SHMT2-215ENST00000554656 TOX2Q96NM4 488 aa12.51□□□□□ -0.41
SHMT2-215ENST00000554656 TMEM39AQ9NV64 488 aa12.51□□□□□ -0.41
SHMT2-215ENST00000554656 PRR12Q9ULL5 1215 aa12.51□□□□□ -0.41
SHMT2-215ENST00000554656 STX8Q9UNK0 236 aa12.51□□□□□ -0.41
SHMT2-215ENST00000554656 RANBP6O60518 1105 aaKnown RBP12.5□□□□□ -0.41
SHMT2-215ENST00000554656 ALAS1P13196 640 aa12.5□□□□□ -0.41
SHMT2-215ENST00000554656 RAG1P15918 1043 aa12.5□□□□□ -0.41
SHMT2-215ENST00000554656 NKX3-2P78367 333 aa12.5□□□□□ -0.41
SHMT2-215ENST00000554656 IKQ13123 557 aaPredicted RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms