RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 CDAN1Q8IWY9 1227 aa13.26□□□□□ -0.29
SHMT2-212ENST00000554467 SMYD4Q8IYR2 804 aaPredicted RBP13.26□□□□□ -0.29
SHMT2-212ENST00000554467 TRERF1Q96PN7 1200 aa13.26□□□□□ -0.29
SHMT2-212ENST00000554467 NUP88Q99567 741 aaPredicted RBP13.26□□□□□ -0.29
SHMT2-212ENST00000554467 IGKV6D-41A0A0C4DH26 115 aa13.25□□□□□ -0.29
SHMT2-212ENST00000554467 M0R2N6 131 aa13.25□□□□□ -0.29
SHMT2-212ENST00000554467 NCAPHQ15003 741 aa13.25□□□□□ -0.29
SHMT2-212ENST00000554467 CERKLQ49MI3 558 aaPredicted RBP13.25□□□□□ -0.29
SHMT2-212ENST00000554467 ZNF579Q8NAF0 562 aaKnown RBP13.25□□□□□ -0.29
SHMT2-212ENST00000554467 IFNKQ9P0W0 207 aa13.25□□□□□ -0.29
SHMT2-212ENST00000554467 EEF2P13639 858 aaKnown RBP13.25□□□□□ -0.29
SHMT2-212ENST00000554467 CCDC148Q8NFR7 591 aa13.25□□□□□ -0.29
SHMT2-212ENST00000554467 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.25□□□□□ -0.29
SHMT2-212ENST00000554467 USP17L10C9JJH3 530 aa13.25□□□□□ -0.29
SHMT2-212ENST00000554467 ADGRF4Q8IZF3 695 aa13.25□□□□□ -0.29
SHMT2-212ENST00000554467 SMARCE1Q969G3 411 aa13.25□□□□□ -0.29
SHMT2-212ENST00000554467 SH3GLB2Q9NR46 395 aa13.25□□□□□ -0.29
SHMT2-212ENST00000554467 SWAP70Q9UH65 585 aa13.25□□□□□ -0.29
SHMT2-212ENST00000554467 SHTN1A0MZ66 631 aa13.24□□□□□ -0.29
SHMT2-212ENST00000554467 CCNT1O60563 726 aaKnown RBP13.24□□□□□ -0.29
SHMT2-212ENST00000554467 PPP1R11O60927 126 aaPredicted RBP13.24□□□□□ -0.29
SHMT2-212ENST00000554467 RRP1BQ14684 758 aaKnown RBP13.24□□□□□ -0.29
SHMT2-212ENST00000554467 KARSQ15046 597 aaKnown RBP13.24□□□□□ -0.29
SHMT2-212ENST00000554467 UBE2SQ16763 222 aa13.24□□□□□ -0.29
SHMT2-212ENST00000554467 SOGA3Q5TF21 947 aa13.24□□□□□ -0.29
SHMT2-212ENST00000554467 KLHL10Q6JEL2 608 aa13.24□□□□□ -0.29
SHMT2-212ENST00000554467 FERMT2Q96AC1 680 aa13.24□□□□□ -0.29
SHMT2-212ENST00000554467 LZTS2Q9BRK4 669 aa13.24□□□□□ -0.29
SHMT2-212ENST00000554467 XPO4Q9C0E2 1151 aaKnown RBP13.24□□□□□ -0.29
SHMT2-212ENST00000554467 SERPINA10Q9UK55 444 aa13.24□□□□□ -0.29
SHMT2-212ENST00000554467 COL4A5P29400 1685 aa13.24□□□□□ -0.29
SHMT2-212ENST00000554467 SMTNL1A8MU46 457 aa13.24□□□□□ -0.29
SHMT2-212ENST00000554467 CCDC93Q567U6 631 aa13.24□□□□□ -0.29
SHMT2-212ENST00000554467 C4orf32Q8N8J7 132 aa13.24□□□□□ -0.29
SHMT2-212ENST00000554467 PAGE5Q96GU1 130 aa13.24□□□□□ -0.29
SHMT2-212ENST00000554467 CSRNP1Q96S65 589 aa13.24□□□□□ -0.29
SHMT2-212ENST00000554467 JMJD4Q9H9V9 463 aa13.24□□□□□ -0.29
SHMT2-212ENST00000554467 VEZTQ9HBM0 779 aa13.24□□□□□ -0.29
SHMT2-212ENST00000554467 TRMT1Q9NXH9 659 aaKnown RBP13.24□□□□□ -0.29
SHMT2-212ENST00000554467 PI4KBQ9UBF8 816 aa13.24□□□□□ -0.29
SHMT2-212ENST00000554467 QSER1Q2KHR3 1735 aa13.24□□□□□ -0.29
SHMT2-212ENST00000554467 FMR1Q06787 632 aaKnown RBP eCLIP13.23□□□□□ -0.29
SHMT2-212ENST00000554467 ZNF543Q08ER8 600 aa13.23□□□□□ -0.29
SHMT2-212ENST00000554467 TPD52L1Q16890 204 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-212ENST00000554467 SPICE1Q8N0Z3 855 aa13.23□□□□□ -0.29
SHMT2-212ENST00000554467 RASSF8Q8NHQ8 419 aa13.23□□□□□ -0.29
SHMT2-212ENST00000554467 ZMYND12Q9H0C1 365 aa13.23□□□□□ -0.29
SHMT2-212ENST00000554467 HSD3B7Q9H2F3 369 aa13.23□□□□□ -0.29
SHMT2-212ENST00000554467 FANCLQ9NW38 375 aa13.23□□□□□ -0.29
SHMT2-212ENST00000554467 CCDC66A2RUB6 948 aa13.23□□□□□ -0.29
SHMT2-212ENST00000554467 NOVP48745 357 aa13.23□□□□□ -0.29
SHMT2-212ENST00000554467 ZBTB9Q96C00 473 aa13.23□□□□□ -0.29
SHMT2-212ENST00000554467 STX17P56962 302 aa13.23□□□□□ -0.29
SHMT2-212ENST00000554467 SAMD1Q6SPF0 538 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-212ENST00000554467 TBCKQ8TEA7 893 aa13.23□□□□□ -0.29
SHMT2-212ENST00000554467 CACTINQ8WUQ7 758 aaKnown RBP13.23□□□□□ -0.29
SHMT2-212ENST00000554467 DPF2Q92785 391 aa13.23□□□□□ -0.29
SHMT2-212ENST00000554467 RIOX1Q9H6W3 641 aa13.23□□□□□ -0.29
SHMT2-212ENST00000554467 C6orf50Q9HD87 102 aa13.23□□□□□ -0.29
SHMT2-212ENST00000554467 PLIN4Q96Q06 1357 aa13.22□□□□□ -0.29
SHMT2-212ENST00000554467 GH2P01242 217 aa13.22□□□□□ -0.29
SHMT2-212ENST00000554467 KRT222Q8N1A0 295 aa13.22□□□□□ -0.29
SHMT2-212ENST00000554467 GJA10Q969M2 543 aa13.22□□□□□ -0.29
SHMT2-212ENST00000554467 IDI2Q9BXS1 227 aa13.22□□□□□ -0.29
SHMT2-212ENST00000554467 TRAPPC10P48553 1259 aa13.22□□□□□ -0.29
SHMT2-212ENST00000554467 ASPRV1Q53RT3 343 aa13.22□□□□□ -0.29
SHMT2-212ENST00000554467 SARM1Q6SZW1 724 aa13.22□□□□□ -0.29
SHMT2-212ENST00000554467 SIAH1Q8IUQ4 282 aa13.22□□□□□ -0.29
SHMT2-212ENST00000554467 REXO1Q8N1G1 1221 aaKnown RBP13.22□□□□□ -0.29
SHMT2-212ENST00000554467 ZNF446Q9NWS9 450 aa13.22□□□□□ -0.29
SHMT2-212ENST00000554467 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.22□□□□□ -0.29
SHMT2-212ENST00000554467 HOOK1Q9UJC3 728 aaKnown RBP13.22□□□□□ -0.29
SHMT2-212ENST00000554467 V9GYY5 206 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-212ENST00000554467 C10orf71Q711Q0 1435 aa13.22□□□□□ -0.29
SHMT2-212ENST00000554467 BMP15O95972 392 aa13.22□□□□□ -0.29
SHMT2-212ENST00000554467 NT5C2P49902 561 aa13.22□□□□□ -0.29
SHMT2-212ENST00000554467 ICA1Q05084 483 aa13.22□□□□□ -0.29
SHMT2-212ENST00000554467 RSBN1LQ6PCB5 846 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-212ENST00000554467 MIGA2Q7L4E1 593 aa13.22□□□□□ -0.29
SHMT2-212ENST00000554467 SUPT20HQ8NEM7 779 aa13.22□□□□□ -0.29
SHMT2-212ENST00000554467 MTRQ99707 1265 aa13.22□□□□□ -0.29
SHMT2-212ENST00000554467 MYH4Q9Y623 1939 aa13.21□□□□□ -0.29
SHMT2-212ENST00000554467 SNHG28P0DPA3 235 aa13.21□□□□□ -0.29
SHMT2-212ENST00000554467 TNNT1P13805 278 aa13.21□□□□□ -0.29
SHMT2-212ENST00000554467 SLC1A4P43007 532 aa13.21□□□□□ -0.29
SHMT2-212ENST00000554467 TNNI2P48788 182 aa13.21□□□□□ -0.29
SHMT2-212ENST00000554467 IKQ13123 557 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-212ENST00000554467 NONOQ15233 471 aaKnown RBP eCLIP13.21□□□□□ -0.29
SHMT2-212ENST00000554467 DTHD1Q6ZMT9 781 aa13.21□□□□□ -0.29
SHMT2-212ENST00000554467 DHX36Q9H2U1 1008 aaKnown RBP13.21□□□□□ -0.29
SHMT2-212ENST00000554467 SIPA1L1O43166 1804 aa13.21□□□□□ -0.29
SHMT2-212ENST00000554467 MYL5Q02045 173 aa13.21□□□□□ -0.3
SHMT2-212ENST00000554467 CUL4BQ13620 913 aa13.21□□□□□ -0.3
SHMT2-212ENST00000554467 ABCB5Q2M3G0 1257 aa13.21□□□□□ -0.3
SHMT2-212ENST00000554467 RBM26Q5T8P6 1007 aaKnown RBP13.21□□□□□ -0.3
SHMT2-212ENST00000554467 CCDC84Q86UT8 332 aaPredicted RBP13.21□□□□□ -0.3
SHMT2-212ENST00000554467 MAPK8IP1Q9UQF2 711 aa13.21□□□□□ -0.3
SHMT2-212ENST00000554467 CD44P16070 742 aaKnown RBP13.2□□□□□ -0.3
SHMT2-212ENST00000554467 FANCCQ00597 558 aa13.2□□□□□ -0.3
SHMT2-212ENST00000554467 SLFN13Q68D06 897 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms