RNA–Protein interactions for RNA: ENST00000554270.5

PTPN21-205, Transcript of protein tyrosine phosphatase, non-receptor type 21, human

TSL 1 (best)

Gene PTPN21, Length 4,008 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN21-205	ENST00000554270	ZNF512B	Q96KM6	892 aa	Predicted RBP	12.81	□□□□□ -0.36
PTPN21-205	ENST00000554270	PHF20	Q9BVI0	1012 aa		12.81	□□□□□ -0.36
PTPN21-205	ENST00000554270	KANSL2	Q9H9L4	492 aa		12.81	□□□□□ -0.36
PTPN21-205	ENST00000554270	SMARCAL1	Q9NZC9	954 aa		12.81	□□□□□ -0.36
PTPN21-205	ENST00000554270		H0YHG0	523 aa		12.8	□□□□□ -0.36
PTPN21-205	ENST00000554270	ERVK-24	P63145	666 aa		12.8	□□□□□ -0.36
PTPN21-205	ENST00000554270	UBE4A	Q14139	1066 aa		12.8	□□□□□ -0.36
PTPN21-205	ENST00000554270	BRD3	Q15059	726 aa		12.8	□□□□□ -0.36
PTPN21-205	ENST00000554270	LRRC41	Q15345	812 aa		12.8	□□□□□ -0.36
PTPN21-205	ENST00000554270	SND1	Q7KZF4	910 aa	Known RBP eCLIP	12.8	□□□□□ -0.36
PTPN21-205	ENST00000554270	RIOK1	Q9BRS2	568 aa	Known RBP	12.8	□□□□□ -0.36
PTPN21-205	ENST00000554270	NDUFA10	O95299	355 aa		12.8	□□□□□ -0.36
PTPN21-205	ENST00000554270	SPTY2D1	Q68D10	685 aa	Predicted RBP	12.8	□□□□□ -0.36
PTPN21-205	ENST00000554270	TMEM139	Q8IV31	216 aa		12.8	□□□□□ -0.36
PTPN21-205	ENST00000554270	NSUN4	Q96CB9	384 aa	Known RBP	12.8	□□□□□ -0.36
PTPN21-205	ENST00000554270	FUT8	Q9BYC5	575 aa		12.8	□□□□□ -0.36
PTPN21-205	ENST00000554270	TMEM60	Q9H2L4	133 aa		12.8	□□□□□ -0.36
PTPN21-205	ENST00000554270	MRC1	P22897	1456 aa		12.8	□□□□□ -0.36
PTPN21-205	ENST00000554270	POTEB2	H3BUK9	544 aa		12.8	□□□□□ -0.36
PTPN21-205	ENST00000554270	TCP11X2	Q5H9J9	407 aa		12.8	□□□□□ -0.36
PTPN21-205	ENST00000554270	PANX2	Q96RD6	677 aa		12.8	□□□□□ -0.36
PTPN21-205	ENST00000554270	DUSP10	Q9Y6W6	482 aa		12.8	□□□□□ -0.36
PTPN21-205	ENST00000554270	ZNF804B	A4D1E1	1349 aa		12.8	□□□□□ -0.36
PTPN21-205	ENST00000554270	PNPLA7	Q6ZV29	1317 aa		12.8	□□□□□ -0.36
PTPN21-205	ENST00000554270	KLRF2	D3W0D1	207 aa		12.79	□□□□□ -0.36
PTPN21-205	ENST00000554270	ZNF18	P17022	549 aa		12.79	□□□□□ -0.36
PTPN21-205	ENST00000554270	GJA10	Q969M2	543 aa		12.79	□□□□□ -0.36
PTPN21-205	ENST00000554270	AGPAT5	Q9NUQ2	364 aa		12.79	□□□□□ -0.36
PTPN21-205	ENST00000554270	BCCIP	Q9P287	314 aa	Known RBP eCLIP	12.79	□□□□□ -0.36
PTPN21-205	ENST00000554270	XDH	P47989	1333 aa		12.79	□□□□□ -0.36
PTPN21-205	ENST00000554270	ATP1A1	P05023	1023 aa	Known RBP	12.79	□□□□□ -0.36
PTPN21-205	ENST00000554270	CALML3	P27482	149 aa		12.79	□□□□□ -0.36
PTPN21-205	ENST00000554270	CCDC40	Q4G0X9	1142 aa		12.79	□□□□□ -0.36
PTPN21-205	ENST00000554270	LRRC47	Q8N1G4	583 aa	Known RBP	12.79	□□□□□ -0.36
PTPN21-205	ENST00000554270	GTPBP6	O43824	516 aa	Predicted RBP	12.79	□□□□□ -0.36
PTPN21-205	ENST00000554270	USO1	O60763	962 aa	Known RBP	12.79	□□□□□ -0.36
PTPN21-205	ENST00000554270	MAP9	Q49MG5	647 aa		12.79	□□□□□ -0.36
PTPN21-205	ENST00000554270	TUBGCP2	Q9BSJ2	902 aa		12.79	□□□□□ -0.36
PTPN21-205	ENST00000554270	RASSF4	Q9H2L5	321 aa		12.79	□□□□□ -0.36
PTPN21-205	ENST00000554270	FAM205A	Q6ZU69	1335 aa		12.79	□□□□□ -0.36
PTPN21-205	ENST00000554270	PPP1R3G	B7ZBB8	358 aa		12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	BAG3	O95817	575 aa		12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	CACNB1	Q02641	598 aa	Predicted RBP	12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	HLTF	Q14527	1009 aa	Known RBP eCLIP	12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	RRAGA	Q7L523	313 aa		12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	NELFCD	Q8IXH7	590 aa		12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	TEX11	Q8IYF3	940 aa		12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	NAA15	Q9BXJ9	866 aa	Known RBP	12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	TSPYL1	Q9H0U9	437 aa		12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	ARFGEF2	Q9Y6D5	1785 aa		12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	SMCO2	A6NFE2	343 aa		12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	ZRANB2	O95218	330 aa	Known RBP eCLIP	12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	KCTD16	Q68DU8	428 aa		12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	RPGR	Q92834	1020 aa	Known RBP	12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	BSDC1	Q9NW68	430 aa	Predicted RBP	12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	CABP7	Q86V35	215 aa		12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	KIFC2	Q96AC6	838 aa		12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	COA7	Q96BR5	231 aa		12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	CALML4	Q96GE6	196 aa		12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	MMS19	Q96T76	1030 aa		12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	UFL1	O94874	794 aa		12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	PAFAH1B1	P43034	410 aa		12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	RBM5	P52756	815 aa	Known RBP eCLIP	12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	KRT83	P78385	493 aa		12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	NFIX	Q14938	502 aa		12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	TCERG1L	Q5VWI1	586 aa		12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	TICAM2	Q86XR7	235 aa		12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	MICALL1	Q8N3F8	863 aa		12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	ZNF579	Q8NAF0	562 aa	Known RBP	12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	LRWD1	Q9UFC0	647 aa		12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	CCNL1	Q9UK58	526 aa	Predicted RBP	12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	RTCB	Q9Y3I0	505 aa	Known RBP	12.78	□□□□□ -0.36
PTPN21-205	ENST00000554270	RNF40	O75150	1001 aa		12.77	□□□□□ -0.36
PTPN21-205	ENST00000554270	FCER1A	P12319	257 aa		12.77	□□□□□ -0.36
PTPN21-205	ENST00000554270	NOP2	P46087	812 aa	Known RBP	12.77	□□□□□ -0.36
PTPN21-205	ENST00000554270	KCNJ6	P48051	423 aa		12.77	□□□□□ -0.36
PTPN21-205	ENST00000554270	ATP1A2	P50993	1020 aa		12.77	□□□□□ -0.36
PTPN21-205	ENST00000554270	FOXR1	Q6PIV2	292 aa		12.77	□□□□□ -0.36
PTPN21-205	ENST00000554270	LINC00116	Q8NCU8	138 aa		12.77	□□□□□ -0.36
PTPN21-205	ENST00000554270	SCN11A	Q9UI33	1791 aa		12.77	□□□□□ -0.36
PTPN21-205	ENST00000554270	PMS1	P54277	932 aa	Known RBP	12.77	□□□□□ -0.37
PTPN21-205	ENST00000554270	GRIK5	Q16478	980 aa		12.77	□□□□□ -0.37
PTPN21-205	ENST00000554270	AFAP1L1	Q8TED9	768 aa		12.77	□□□□□ -0.37
PTPN21-205	ENST00000554270	TMEM260	Q9NX78	707 aa		12.77	□□□□□ -0.37
PTPN21-205	ENST00000554270	EHD2	Q9NZN4	543 aa		12.77	□□□□□ -0.37
PTPN21-205	ENST00000554270	ATP2C2	O75185	946 aa		12.77	□□□□□ -0.37
PTPN21-205	ENST00000554270	PLCG1	P19174	1290 aa		12.77	□□□□□ -0.37
PTPN21-205	ENST00000554270	SARS	P49591	514 aa	Known RBP	12.77	□□□□□ -0.37
PTPN21-205	ENST00000554270	TBX2	Q13207	712 aa	Predicted RBP	12.77	□□□□□ -0.37
PTPN21-205	ENST00000554270	CNOT6L	Q96LI5	555 aa	Known RBP	12.77	□□□□□ -0.37
PTPN21-205	ENST00000554270	EYA3	Q99504	573 aa		12.77	□□□□□ -0.37
PTPN21-205	ENST00000554270	SEPT11	Q9NVA2	429 aa	Known RBP	12.77	□□□□□ -0.37
PTPN21-205	ENST00000554270	LCMT1	Q9UIC8	334 aa		12.77	□□□□□ -0.37
PTPN21-205	ENST00000554270	CNTNAP5	Q8WYK1	1306 aa		12.77	□□□□□ -0.37
PTPN21-205	ENST00000554270	MYO1C	O00159	1063 aa		12.76	□□□□□ -0.37
PTPN21-205	ENST00000554270	BCL9	O00512	1426 aa		12.76	□□□□□ -0.37
PTPN21-205	ENST00000554270	ATP2C1	P98194	919 aa	Predicted RBP	12.76	□□□□□ -0.37
PTPN21-205	ENST00000554270	ZNF658	Q5TYW1	1059 aa	Predicted RBP	12.76	□□□□□ -0.37
PTPN21-205	ENST00000554270	ZNF384	Q8TF68	577 aa		12.76	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms