RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 ESYT2A0FGR8 921 aa16.72■□□□□ 0.27
SHMT2-210ENST00000553950 STX6O43752 255 aa16.72■□□□□ 0.27
SHMT2-210ENST00000553950 FDPSP14324 419 aaKnown RBP16.72■□□□□ 0.27
SHMT2-210ENST00000553950 OTUD7BQ6GQQ9 843 aa16.72■□□□□ 0.27
SHMT2-210ENST00000553950 LBX2Q6XYB7 198 aa16.72■□□□□ 0.27
SHMT2-210ENST00000553950 HEATR3Q7Z4Q2 680 aa16.72■□□□□ 0.27
SHMT2-210ENST00000553950 PIGSQ96S52 555 aa16.72■□□□□ 0.27
SHMT2-210ENST00000553950 BARHL2Q9NY43 387 aa16.72■□□□□ 0.27
SHMT2-210ENST00000553950 CHMP5Q9NZZ3 219 aa16.72■□□□□ 0.27
SHMT2-210ENST00000553950 TESPA1A2RU30 521 aaPredicted RBP16.71■□□□□ 0.27
SHMT2-210ENST00000553950 RASSF10A6NK89 507 aa16.71■□□□□ 0.27
SHMT2-210ENST00000553950 DSG3P32926 999 aa16.71■□□□□ 0.27
SHMT2-210ENST00000553950 COPB2P35606 906 aa16.71■□□□□ 0.27
SHMT2-210ENST00000553950 DDIT3P35638 169 aa16.71■□□□□ 0.27
SHMT2-210ENST00000553950 NAPAP54920 295 aa16.71■□□□□ 0.27
SHMT2-210ENST00000553950 NOGQ13253 232 aa16.71■□□□□ 0.27
SHMT2-210ENST00000553950 PKN1Q16512 942 aa16.71■□□□□ 0.27
SHMT2-210ENST00000553950 QRICH1Q2TAL8 776 aa16.71■□□□□ 0.27
SHMT2-210ENST00000553950 TREML2Q5T2D2 321 aa16.71■□□□□ 0.27
SHMT2-210ENST00000553950 FBXO11Q86XK2 927 aa16.71■□□□□ 0.27
SHMT2-210ENST00000553950 BICD2Q8TD16 824 aa16.71■□□□□ 0.27
SHMT2-210ENST00000553950 MS4A4AQ96JQ5 239 aa16.71■□□□□ 0.27
SHMT2-210ENST00000553950 PARK7Q99497 189 aaKnown RBP16.71■□□□□ 0.27
SHMT2-210ENST00000553950 SLC38A10Q9HBR0 1119 aa16.71■□□□□ 0.27
SHMT2-210ENST00000553950 VAT1LQ9HCJ6 419 aa16.71■□□□□ 0.27
SHMT2-210ENST00000553950 ABCB11O95342 1321 aa16.7■□□□□ 0.26
SHMT2-210ENST00000553950 VPS37CA5D8V6 355 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-210ENST00000553950 SPDYE16A6NNV3 312 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-210ENST00000553950 ICAM1P05362 532 aa16.7■□□□□ 0.26
SHMT2-210ENST00000553950 SYT1P21579 422 aa16.7■□□□□ 0.26
SHMT2-210ENST00000553950 GNA11P29992 359 aa16.7■□□□□ 0.26
SHMT2-210ENST00000553950 DGKZQ13574 1117 aa16.7■□□□□ 0.26
SHMT2-210ENST00000553950 PAXIP1Q6ZW49 1069 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-210ENST00000553950 FBXO18Q8NFZ0 1043 aa16.7■□□□□ 0.26
SHMT2-210ENST00000553950 MAF1Q9H063 256 aa16.7■□□□□ 0.26
SHMT2-210ENST00000553950 CPVLQ9H3G5 476 aa16.7■□□□□ 0.26
SHMT2-210ENST00000553950 FBXO28Q9NVF7 368 aa16.7■□□□□ 0.26
SHMT2-210ENST00000553950 ATP6V1DQ9Y5K8 247 aa16.7■□□□□ 0.26
SHMT2-210ENST00000553950 STXBP3O00186 592 aa16.69■□□□□ 0.26
SHMT2-210ENST00000553950 VWA5AO00534 786 aa16.69■□□□□ 0.26
SHMT2-210ENST00000553950 ATP2A1O14983 1001 aa16.69■□□□□ 0.26
SHMT2-210ENST00000553950 MMP1P03956 469 aa16.69■□□□□ 0.26
SHMT2-210ENST00000553950 MOGSQ13724 837 aa16.69■□□□□ 0.26
SHMT2-210ENST00000553950 GNL2Q13823 731 aaKnown RBP16.69■□□□□ 0.26
SHMT2-210ENST00000553950 SLC35G1Q2M3R5 365 aa16.69■□□□□ 0.26
SHMT2-210ENST00000553950 TKFCQ3LXA3 575 aa16.69■□□□□ 0.26
SHMT2-210ENST00000553950 WWC2Q6AWC2 1192 aa16.69■□□□□ 0.26
SHMT2-210ENST00000553950 MCTP2Q6DN12 878 aa16.69■□□□□ 0.26
SHMT2-210ENST00000553950 PIBF1Q8WXW3 757 aa16.69■□□□□ 0.26
SHMT2-210ENST00000553950 BRI3BPQ8WY22 251 aa16.69■□□□□ 0.26
SHMT2-210ENST00000553950 ASCC2Q9H1I8 757 aaPredicted RBP16.69■□□□□ 0.26
SHMT2-210ENST00000553950 C6orf50Q9HD87 102 aa16.69■□□□□ 0.26
SHMT2-210ENST00000553950 ADAMTS5Q9UNA0 930 aa16.69■□□□□ 0.26
SHMT2-210ENST00000553950 GCLCP48506 637 aaPredicted RBP16.68■□□□□ 0.26
SHMT2-210ENST00000553950 NLRP5P59047 1200 aa16.68■□□□□ 0.26
SHMT2-210ENST00000553950 HERVK_113P62684 666 aa16.68■□□□□ 0.26
SHMT2-210ENST00000553950 MKRN3Q13064 507 aaKnown RBP16.68■□□□□ 0.26
SHMT2-210ENST00000553950 DEFB115Q30KQ5 88 aa16.68■□□□□ 0.26
SHMT2-210ENST00000553950 KRT40Q6A162 431 aa16.68■□□□□ 0.26
SHMT2-210ENST00000553950 GPAT2Q6NUI2 795 aa16.68■□□□□ 0.26
SHMT2-210ENST00000553950 SAMD1Q6SPF0 538 aaPredicted RBP16.68■□□□□ 0.26
SHMT2-210ENST00000553950 SAMD3Q8N6K7 520 aa16.68■□□□□ 0.26
SHMT2-210ENST00000553950 DAGLBQ8NCG7 672 aa16.68■□□□□ 0.26
SHMT2-210ENST00000553950 SMCR8Q8TEV9 937 aaPredicted RBP16.68■□□□□ 0.26
SHMT2-210ENST00000553950 ATG4CQ96DT6 458 aa16.68■□□□□ 0.26
SHMT2-210ENST00000553950 PHF20Q9BVI0 1012 aa16.68■□□□□ 0.26
SHMT2-210ENST00000553950 TEX13BQ9BXU2 312 aa16.68■□□□□ 0.26
SHMT2-210ENST00000553950 ZSCAN16Q9H4T2 348 aaPredicted RBP16.68■□□□□ 0.26
SHMT2-210ENST00000553950 VPS54Q9P1Q0 977 aa16.68■□□□□ 0.26
SHMT2-210ENST00000553950 CCPG1Q9ULG6 757 aa16.68■□□□□ 0.26
SHMT2-210ENST00000553950 MRPL11Q9Y3B7 192 aaKnown RBP16.68■□□□□ 0.26
SHMT2-210ENST00000553950 PCDHA1Q9Y5I3 950 aa16.68■□□□□ 0.26
SHMT2-210ENST00000553950 hCG_1642624A0A1W2PR95 340 aa16.67■□□□□ 0.26
SHMT2-210ENST00000553950 FAM155AB1AL88 458 aaPredicted RBP16.67■□□□□ 0.26
SHMT2-210ENST00000553950 BTBD19C9JJ37 291 aa16.67■□□□□ 0.26
SHMT2-210ENST00000553950 PDHXO00330 501 aa16.67■□□□□ 0.26
SHMT2-210ENST00000553950 PPFIA3O75145 1194 aa16.67■□□□□ 0.26
SHMT2-210ENST00000553950 ALDH1A1P00352 501 aa16.67■□□□□ 0.26
SHMT2-210ENST00000553950 ZSCAN22P10073 491 aaPredicted RBP16.67■□□□□ 0.26
SHMT2-210ENST00000553950 KRT2P35908 639 aa16.67■□□□□ 0.26
SHMT2-210ENST00000553950 ADCY7P51828 1080 aa16.67■□□□□ 0.26
SHMT2-210ENST00000553950 CCDC174Q6PII3 467 aa16.67■□□□□ 0.26
SHMT2-210ENST00000553950 BRAPQ7Z569 592 aa16.67■□□□□ 0.26
SHMT2-210ENST00000553950 GPKOWQ92917 476 aaPredicted RBP eCLIP16.67■□□□□ 0.26
SHMT2-210ENST00000553950 CUL5Q93034 780 aa16.67■□□□□ 0.26
SHMT2-210ENST00000553950 ZMYND12Q9H0C1 365 aa16.67■□□□□ 0.26
SHMT2-210ENST00000553950 BRD1O95696 1058 aa16.66■□□□□ 0.26
SHMT2-210ENST00000553950 MRPL12P52815 198 aaKnown RBP16.66■□□□□ 0.26
SHMT2-210ENST00000553950 MCF2L2Q86YR7 1114 aa16.66■□□□□ 0.26
SHMT2-210ENST00000553950 AIFM3Q96NN9 605 aa16.66■□□□□ 0.26
SHMT2-210ENST00000553950 FOXP1Q9H334 677 aaPredicted RBP16.66■□□□□ 0.26
SHMT2-210ENST00000553950 FBXO40Q9UH90 709 aa16.66■□□□□ 0.26
SHMT2-210ENST00000553950 PCDHA4Q9UN74 947 aa16.66■□□□□ 0.26
SHMT2-210ENST00000553950 MTMR6Q9Y217 621 aa16.66■□□□□ 0.26
SHMT2-210ENST00000553950 RABGAP1Q9Y3P9 1069 aa16.66■□□□□ 0.26
SHMT2-210ENST00000553950 FOSBP53539 338 aa16.65■□□□□ 0.26
SHMT2-210ENST00000553950 CCNA1P78396 465 aa16.65■□□□□ 0.26
SHMT2-210ENST00000553950 USH1GQ495M9 461 aa16.65■□□□□ 0.26
SHMT2-210ENST00000553950 DIS3L2Q8IYB7 885 aaKnown RBP16.65■□□□□ 0.26
SHMT2-210ENST00000553950 REPS2Q8NFH8 660 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms