RNA–Protein interactions for RNA: ENST00000553923.1

SRP54-204, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-204ENST00000553923 ATG4CQ96DT6 458 aa4.59□□□□□ -1.67
SRP54-204ENST00000553923 FAM161BQ96MY7 647 aa4.59□□□□□ -1.67
SRP54-204ENST00000553923 KRTAP9-8Q9BYQ0 159 aa4.59□□□□□ -1.67
SRP54-204ENST00000553923 EHMT1Q9H9B1 1298 aa4.59□□□□□ -1.67
SRP54-204ENST00000553923 BRMS1Q9HCU9 246 aa4.59□□□□□ -1.67
SRP54-204ENST00000553923 GMIPQ9P107 970 aa4.59□□□□□ -1.67
SRP54-204ENST00000553923 IMPACTQ9P2X3 320 aa4.59□□□□□ -1.67
SRP54-204ENST00000553923 PCDHB14Q9Y5E9 798 aa4.59□□□□□ -1.67
SRP54-204ENST00000553923 ROBO2Q9HCK4 1378 aa4.58□□□□□ -1.68
SRP54-204ENST00000553923 A0A1B0GTL3 188 aa4.58□□□□□ -1.68
SRP54-204ENST00000553923 ATF2P15336 505 aa4.58□□□□□ -1.68
SRP54-204ENST00000553923 ENDOUP21128 410 aaKnown RBP4.58□□□□□ -1.68
SRP54-204ENST00000553923 CHMP4BP1P59074 171 aa4.58□□□□□ -1.68
SRP54-204ENST00000553923 FOXO4P98177 505 aa4.58□□□□□ -1.68
SRP54-204ENST00000553923 ZNF200P98182 395 aaPredicted RBP4.58□□□□□ -1.68
SRP54-204ENST00000553923 PUM1Q14671 1186 aaKnown RBP eCLIP4.58□□□□□ -1.68
SRP54-204ENST00000553923 NR1I3Q14994 352 aa4.58□□□□□ -1.68
SRP54-204ENST00000553923 ZC3H14Q6PJT7 736 aaKnown RBP4.58□□□□□ -1.68
SRP54-204ENST00000553923 LIPIQ6XZB0 460 aa4.58□□□□□ -1.68
SRP54-204ENST00000553923 SAPCD2Q86UD0 394 aa4.58□□□□□ -1.68
SRP54-204ENST00000553923 TMEM192Q8IY95 271 aa4.58□□□□□ -1.68
SRP54-204ENST00000553923 ADGRG2Q8IZP9 1017 aa4.58□□□□□ -1.68
SRP54-204ENST00000553923 CRELD1Q96HD1 420 aa4.58□□□□□ -1.68
SRP54-204ENST00000553923 ZNF512BQ96KM6 892 aaPredicted RBP4.58□□□□□ -1.68
SRP54-204ENST00000553923 AP5S1Q9NUS5 200 aa4.58□□□□□ -1.68
SRP54-204ENST00000553923 GFOD1Q9NXC2 390 aa4.58□□□□□ -1.68
SRP54-204ENST00000553923 SH3D21A4FU49 640 aa4.57□□□□□ -1.68
SRP54-204ENST00000553923 TLR3O15455 904 aaKnown RBP4.57□□□□□ -1.68
SRP54-204ENST00000553923 SRGAP3O43295 1099 aa4.57□□□□□ -1.68
SRP54-204ENST00000553923 DBHP09172 617 aa4.57□□□□□ -1.68
SRP54-204ENST00000553923 CCNFP41002 786 aa4.57□□□□□ -1.68
SRP54-204ENST00000553923 PWP1Q13610 501 aa4.57□□□□□ -1.68
SRP54-204ENST00000553923 MLECQ14165 292 aa4.57□□□□□ -1.68
SRP54-204ENST00000553923 ERMP1Q7Z2K6 904 aa4.57□□□□□ -1.68
SRP54-204ENST00000553923 NLGN1Q8N2Q7 840 aa4.57□□□□□ -1.68
SRP54-204ENST00000553923 PRR13Q9NZ81 148 aa4.57□□□□□ -1.68
SRP54-204ENST00000553923 HCFC2Q9Y5Z7 792 aa4.57□□□□□ -1.68
SRP54-204ENST00000553923 DUSP10Q9Y6W6 482 aa4.57□□□□□ -1.68
SRP54-204ENST00000553923 SUPT5HO00267 1087 aaKnown RBP4.56□□□□□ -1.68
SRP54-204ENST00000553923 MEIS1O00470 390 aa4.56□□□□□ -1.68
SRP54-204ENST00000553923 CLEC3AO75596 197 aa4.56□□□□□ -1.68
SRP54-204ENST00000553923 PFKLP17858 780 aa4.56□□□□□ -1.68
SRP54-204ENST00000553923 TNFRSF1AP19438 455 aa4.56□□□□□ -1.68
SRP54-204ENST00000553923 MAGEA10P43363 369 aaPredicted RBP4.56□□□□□ -1.68
SRP54-204ENST00000553923 CWF19L2Q2TBE0 894 aaKnown RBP4.56□□□□□ -1.68
SRP54-204ENST00000553923 NT5DC1Q5TFE4 455 aa4.56□□□□□ -1.68
SRP54-204ENST00000553923 FERMT3Q86UX7 667 aa4.56□□□□□ -1.68
SRP54-204ENST00000553923 ZNF526Q8TF50 670 aaPredicted RBP4.56□□□□□ -1.68
SRP54-204ENST00000553923 EAF1Q96JC9 268 aaPredicted RBP4.56□□□□□ -1.68
SRP54-204ENST00000553923 RBM15Q96T37 977 aaKnown RBP eCLIP4.56□□□□□ -1.68
SRP54-204ENST00000553923 SPATA25Q9BR10 227 aa4.56□□□□□ -1.68
SRP54-204ENST00000553923 CDADC1Q9BWV3 514 aa4.56□□□□□ -1.68
SRP54-204ENST00000553923 SLC12A9Q9BXP2 914 aa4.56□□□□□ -1.68
SRP54-204ENST00000553923 SRRTQ9BXP5 876 aaKnown RBP4.56□□□□□ -1.68
SRP54-204ENST00000553923 KRTAP3-1Q9BYR8 98 aa4.56□□□□□ -1.68
SRP54-204ENST00000553923 SUSD2Q9UGT4 822 aa4.56□□□□□ -1.68
SRP54-204ENST00000553923 K7ESM1 405 aa4.55□□□□□ -1.68
SRP54-204ENST00000553923 TNFRSF10CO14798 259 aa4.55□□□□□ -1.68
SRP54-204ENST00000553923 SHOXO15266 292 aa4.55□□□□□ -1.68
SRP54-204ENST00000553923 AKAP8O43823 692 aaKnown RBP4.55□□□□□ -1.68
SRP54-204ENST00000553923 CYBBP04839 570 aa4.55□□□□□ -1.68
SRP54-204ENST00000553923 CRKP46108 304 aa4.55□□□□□ -1.68
SRP54-204ENST00000553923 ADAM17P78536 824 aa4.55□□□□□ -1.68
SRP54-204ENST00000553923 TARBP2Q15633 366 aaKnown RBP4.55□□□□□ -1.68
SRP54-204ENST00000553923 PAQR3Q6TCH7 311 aa4.55□□□□□ -1.68
SRP54-204ENST00000553923 CRTC3Q6UUV7 619 aa4.55□□□□□ -1.68
SRP54-204ENST00000553923 NLRC3Q7RTR2 1065 aa4.55□□□□□ -1.68
SRP54-204ENST00000553923 FBXO33Q7Z6M2 555 aa4.55□□□□□ -1.68
SRP54-204ENST00000553923 LSRQ86X29 649 aaPredicted RBP4.55□□□□□ -1.68
SRP54-204ENST00000553923 GPR20Q99678 358 aa4.55□□□□□ -1.68
SRP54-204ENST00000553923 ANTXR1Q9H6X2 564 aa4.55□□□□□ -1.68
SRP54-204ENST00000553923 COPRSQ9NQ92 184 aa4.55□□□□□ -1.68
SRP54-204ENST00000553923 KBTBD4Q9NVX7 518 aa4.55□□□□□ -1.68
SRP54-204ENST00000553923 PCDHB12Q9Y5F1 795 aa4.55□□□□□ -1.68
SRP54-204ENST00000553923 MEIS3P2A8K0S8 358 aa4.54□□□□□ -1.68
SRP54-204ENST00000553923 NOBOXO60393 691 aa4.54□□□□□ -1.68
SRP54-204ENST00000553923 ITGB3P05106 788 aa4.54□□□□□ -1.68
SRP54-204ENST00000553923 NME1P15531 152 aaKnown RBP4.54□□□□□ -1.68
SRP54-204ENST00000553923 CLCQ05315 142 aa4.54□□□□□ -1.68
SRP54-204ENST00000553923 AUHQ13825 339 aaKnown RBP4.54□□□□□ -1.68
SRP54-204ENST00000553923 UBXN11Q5T124 520 aa4.54□□□□□ -1.68
SRP54-204ENST00000553923 DNAJC14Q6Y2X3 702 aaPredicted RBP4.54□□□□□ -1.68
SRP54-204ENST00000553923 RNF38Q9H0F5 515 aa4.54□□□□□ -1.68
SRP54-204ENST00000553923 MATN3O15232 486 aa4.53□□□□□ -1.68
SRP54-204ENST00000553923 GSNP06396 782 aa4.53□□□□□ -1.68
SRP54-204ENST00000553923 EIF4A3P38919 411 aaKnown RBP4.53□□□□□ -1.68
SRP54-204ENST00000553923 XPCQ01831 940 aaPredicted RBP4.53□□□□□ -1.68
SRP54-204ENST00000553923 ZNF827Q17R98 1081 aa4.53□□□□□ -1.68
SRP54-204ENST00000553923 HLA-DQA1Q5Y7H0 255 aa4.53□□□□□ -1.68
SRP54-204ENST00000553923 NLGN2Q8NFZ4 835 aa4.53□□□□□ -1.68
SRP54-204ENST00000553923 SLC6A18Q96N87 628 aa4.53□□□□□ -1.68
SRP54-204ENST00000553923 LNPKQ9C0E8 428 aa4.53□□□□□ -1.68
SRP54-204ENST00000553923 MKRN2Q9H000 416 aaKnown RBP4.53□□□□□ -1.68
SRP54-204ENST00000553923 PMF1-BGLAPU3KQ54 211 aa4.53□□□□□ -1.68
SRP54-204ENST00000553923 C1QTNF3-AMACRE9PGA6 284 aa4.52□□□□□ -1.69
SRP54-204ENST00000553923 FGF10O15520 208 aaPredicted RBP4.52□□□□□ -1.69
SRP54-204ENST00000553923 SORBS3O60504 671 aa4.52□□□□□ -1.69
SRP54-204ENST00000553923 NCAM1P13591 858 aa4.52□□□□□ -1.69
SRP54-204ENST00000553923 MC3RP41968 323 aa4.52□□□□□ -1.69
SRP54-204ENST00000553923 PRR5P85299 388 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms