RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 ZSCAN10Q96SZ4 725 aaPredicted RBP12.09□□□□□ -0.47
CCDC88C-206ENST00000553437 KRT23Q9C075 422 aa12.09□□□□□ -0.47
CCDC88C-206ENST00000553437 DDX20Q9UHI6 824 aaKnown RBP12.09□□□□□ -0.47
CCDC88C-206ENST00000553437 ISY1Q9ULR0 285 aaKnown RBP12.09□□□□□ -0.47
CCDC88C-206ENST00000553437 CTDP1Q9Y5B0 961 aaPredicted RBP12.09□□□□□ -0.47
CCDC88C-206ENST00000553437 TAF6LQ9Y6J9 622 aa12.09□□□□□ -0.47
CCDC88C-206ENST00000553437 ZNF236Q9UL36 1845 aa12.09□□□□□ -0.47
CCDC88C-206ENST00000553437 SLC16A2P36021 539 aa12.08□□□□□ -0.48
CCDC88C-206ENST00000553437 SLC4A3P48751 1232 aa12.08□□□□□ -0.48
CCDC88C-206ENST00000553437 ZNF543Q08ER8 600 aa12.08□□□□□ -0.48
CCDC88C-206ENST00000553437 IKQ13123 557 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-206ENST00000553437 CCDC178Q5BJE1 867 aa12.08□□□□□ -0.48
CCDC88C-206ENST00000553437 BMP2KLQ5H9B9 411 aa12.08□□□□□ -0.48
CCDC88C-206ENST00000553437 SYDE2Q5VT97 1194 aa12.08□□□□□ -0.48
CCDC88C-206ENST00000553437 NECAB2Q7Z6G3 386 aa12.08□□□□□ -0.48
CCDC88C-206ENST00000553437 IQCA1Q86XH1 822 aa12.08□□□□□ -0.48
CCDC88C-206ENST00000553437 ENAHQ8N8S7 591 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-206ENST00000553437 FGD4Q96M96 766 aa12.08□□□□□ -0.48
CCDC88C-206ENST00000553437 TINF2Q9BSI4 451 aa12.08□□□□□ -0.48
CCDC88C-206ENST00000553437 RANBP17Q9H2T7 1088 aaKnown RBP12.08□□□□□ -0.48
CCDC88C-206ENST00000553437 CNNM2Q9H8M5 875 aa12.08□□□□□ -0.48
CCDC88C-206ENST00000553437 GPCPD1Q9NPB8 672 aa12.08□□□□□ -0.48
CCDC88C-206ENST00000553437 FBXO40Q9UH90 709 aa12.08□□□□□ -0.48
CCDC88C-206ENST00000553437 PARP14Q460N5 1801 aa12.08□□□□□ -0.48
CCDC88C-206ENST00000553437 FRMPD2Q68DX3 1309 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-206ENST00000553437 COL6A1P12109 1028 aa12.07□□□□□ -0.48
CCDC88C-206ENST00000553437 CNGA1P29973 690 aa12.07□□□□□ -0.48
CCDC88C-206ENST00000553437 TKFCQ3LXA3 575 aa12.07□□□□□ -0.48
CCDC88C-206ENST00000553437 CCDC174Q6PII3 467 aa12.07□□□□□ -0.48
CCDC88C-206ENST00000553437 MAMDC4Q6UXC1 1216 aa12.07□□□□□ -0.48
CCDC88C-206ENST00000553437 CYB5R4Q7L1T6 521 aa12.07□□□□□ -0.48
CCDC88C-206ENST00000553437 DDX11Q96FC9 970 aa12.07□□□□□ -0.48
CCDC88C-206ENST00000553437 HTATIP2Q9BUP3 242 aa12.07□□□□□ -0.48
CCDC88C-206ENST00000553437 NRBP1Q9UHY1 535 aa12.07□□□□□ -0.48
CCDC88C-206ENST00000553437 SEPT4O43236 478 aa12.06□□□□□ -0.48
CCDC88C-206ENST00000553437 MSCO60682 206 aa12.06□□□□□ -0.48
CCDC88C-206ENST00000553437 SNAI1O95863 264 aaPredicted RBP12.06□□□□□ -0.48
CCDC88C-206ENST00000553437 ICAM1P05362 532 aa12.06□□□□□ -0.48
CCDC88C-206ENST00000553437 ZNF865P0CJ78 1059 aaPredicted RBP12.06□□□□□ -0.48
CCDC88C-206ENST00000553437 GOLGA8HP0CJ92 632 aa12.06□□□□□ -0.48
CCDC88C-206ENST00000553437 TAL1P17542 331 aaPredicted RBP12.06□□□□□ -0.48
CCDC88C-206ENST00000553437 FXR1P51114 621 aaKnown RBP eCLIP12.06□□□□□ -0.48
CCDC88C-206ENST00000553437 SEC23AQ15436 765 aa12.06□□□□□ -0.48
CCDC88C-206ENST00000553437 MUM1L1Q5H9M0 696 aa12.06□□□□□ -0.48
CCDC88C-206ENST00000553437 STOX1Q6ZVD7 989 aa12.06□□□□□ -0.48
CCDC88C-206ENST00000553437 ZNF467Q7Z7K2 595 aaPredicted RBP12.06□□□□□ -0.48
CCDC88C-206ENST00000553437 ANKRD35Q8N283 1001 aa12.06□□□□□ -0.48
CCDC88C-206ENST00000553437 MSL3Q8N5Y2 521 aaKnown RBP12.06□□□□□ -0.48
CCDC88C-206ENST00000553437 PNMA1Q8ND90 353 aa12.06□□□□□ -0.48
CCDC88C-206ENST00000553437 DPF3Q92784 378 aa12.06□□□□□ -0.48
CCDC88C-206ENST00000553437 TRERF1Q96PN7 1200 aa12.06□□□□□ -0.48
CCDC88C-206ENST00000553437 ESYT1Q9BSJ8 1104 aa12.06□□□□□ -0.48
CCDC88C-206ENST00000553437 LSG1Q9H089 658 aaKnown RBP12.06□□□□□ -0.48
CCDC88C-206ENST00000553437 ACAD9Q9H845 621 aa12.06□□□□□ -0.48
CCDC88C-206ENST00000553437 A1CFQ9NQ94 594 aaKnown RBP12.06□□□□□ -0.48
CCDC88C-206ENST00000553437 HOMER2Q9NSB8 354 aa12.06□□□□□ -0.48
CCDC88C-206ENST00000553437 RNF146Q9NTX7 359 aa12.06□□□□□ -0.48
CCDC88C-206ENST00000553437 PFASO15067 1338 aa12.06□□□□□ -0.48
CCDC88C-206ENST00000553437 TNKSO95271 1327 aa12.06□□□□□ -0.48
CCDC88C-206ENST00000553437 E7EWF7 191 aa12.05□□□□□ -0.48
CCDC88C-206ENST00000553437 H0YGN5 161 aa12.05□□□□□ -0.48
CCDC88C-206ENST00000553437 ALAS1P13196 640 aa12.05□□□□□ -0.48
CCDC88C-206ENST00000553437 ANO1Q5XXA6 986 aa12.05□□□□□ -0.48
CCDC88C-206ENST00000553437 FAM133AQ8N9E0 248 aa12.05□□□□□ -0.48
CCDC88C-206ENST00000553437 CCDC136Q96JN2 1154 aa12.05□□□□□ -0.48
CCDC88C-206ENST00000553437 CPVLQ9H3G5 476 aa12.05□□□□□ -0.48
CCDC88C-206ENST00000553437 C11orf49Q9H6J7 331 aa12.05□□□□□ -0.48
CCDC88C-206ENST00000553437 KAT14Q9H8E8 782 aa12.05□□□□□ -0.48
CCDC88C-206ENST00000553437 CCPG1Q9ULG6 757 aa12.05□□□□□ -0.48
CCDC88C-206ENST00000553437 RBM8AQ9Y5S9 174 aaKnown RBP12.05□□□□□ -0.48
CCDC88C-206ENST00000553437 SYNGAP1Q96PV0 1343 aa12.05□□□□□ -0.48
CCDC88C-206ENST00000553437 MYH4Q9Y623 1939 aa12.04□□□□□ -0.48
CCDC88C-206ENST00000553437 SOWAHBA6NEL2 793 aa12.04□□□□□ -0.48
CCDC88C-206ENST00000553437 CNTN2Q02246 1040 aa12.04□□□□□ -0.48
CCDC88C-206ENST00000553437 TRDNQ13061 729 aa12.04□□□□□ -0.48
CCDC88C-206ENST00000553437 GPATCH4Q5T3I0 446 aaKnown RBP12.04□□□□□ -0.48
CCDC88C-206ENST00000553437 CLEC4DQ8WXI8 215 aa12.04□□□□□ -0.48
CCDC88C-206ENST00000553437 UBAC1Q9BSL1 405 aa12.04□□□□□ -0.48
CCDC88C-206ENST00000553437 UBA5Q9GZZ9 404 aa12.04□□□□□ -0.48
CCDC88C-206ENST00000553437 TRIOBPQ9H2D6 2365 aa12.03□□□□□ -0.48
CCDC88C-206ENST00000553437 COL11A1P12107 1806 aaPredicted RBP12.03□□□□□ -0.48
CCDC88C-206ENST00000553437 POTEB2H3BUK9 544 aa12.03□□□□□ -0.48
CCDC88C-206ENST00000553437 ANTXR2P58335 489 aa12.03□□□□□ -0.48
CCDC88C-206ENST00000553437 NECTIN1Q15223 517 aa12.03□□□□□ -0.48
CCDC88C-206ENST00000553437 IFIT1BQ5T764 474 aaKnown RBP12.03□□□□□ -0.48
CCDC88C-206ENST00000553437 KIAA1211Q6ZU35 1233 aa12.03□□□□□ -0.48
CCDC88C-206ENST00000553437 MB21D2Q8IYB1 491 aaPredicted RBP12.03□□□□□ -0.48
CCDC88C-206ENST00000553437 NCOA7Q8NI08 942 aa12.03□□□□□ -0.48
CCDC88C-206ENST00000553437 KATNBL1Q9H079 304 aa12.03□□□□□ -0.48
CCDC88C-206ENST00000553437 SENP2Q9HC62 589 aa12.03□□□□□ -0.48
CCDC88C-206ENST00000553437 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.03□□□□□ -0.48
CCDC88C-206ENST00000553437 CYP39A1Q9NYL5 469 aa12.03□□□□□ -0.48
CCDC88C-206ENST00000553437 DNAH12Q6ZR08 3092 aa12.03□□□□□ -0.48
CCDC88C-206ENST00000553437 ASTN1O14525 1302 aa12.03□□□□□ -0.48
CCDC88C-206ENST00000553437 CEP290O15078 2479 aa12.02□□□□□ -0.48
CCDC88C-206ENST00000553437 DNM1LO00429 736 aa12.02□□□□□ -0.49
CCDC88C-206ENST00000553437 NFIBO00712 420 aa12.02□□□□□ -0.49
CCDC88C-206ENST00000553437 SLC27A2O14975 620 aa12.02□□□□□ -0.49
CCDC88C-206ENST00000553437 EVI5O60447 810 aa12.02□□□□□ -0.49
CCDC88C-206ENST00000553437 COL9A3Q14050 684 aaPredicted RBP12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms