RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 KLHL42Q9P2K6 505 aa7.03□□□□□ -1.28
SCFD1-209ENST00000553280 ATP8A1Q9Y2Q0 1164 aa7.03□□□□□ -1.28
SCFD1-209ENST00000553280 SUGT1Q9Y2Z0 365 aa7.03□□□□□ -1.28
SCFD1-209ENST00000553280 PAX4O43316 350 aa7.02□□□□□ -1.29
SCFD1-209ENST00000553280 SLITRK5O94991 958 aa7.02□□□□□ -1.29
SCFD1-209ENST00000553280 ITGA4P13612 1032 aa7.02□□□□□ -1.29
SCFD1-209ENST00000553280 ETV3P41162 512 aa7.02□□□□□ -1.29
SCFD1-209ENST00000553280 POMZP3Q6PJE2 187 aa7.02□□□□□ -1.29
SCFD1-209ENST00000553280 ARHGAP27Q6ZUM4 889 aa7.02□□□□□ -1.29
SCFD1-209ENST00000553280 TRIM59Q8IWR1 403 aa7.02□□□□□ -1.29
SCFD1-209ENST00000553280 BCL7CQ8WUZ0 217 aaPredicted RBP7.02□□□□□ -1.29
SCFD1-209ENST00000553280 RNF141Q8WVD5 230 aa7.02□□□□□ -1.29
SCFD1-209ENST00000553280 LGR4Q9BXB1 951 aa7.02□□□□□ -1.29
SCFD1-209ENST00000553280 ASPNQ9BXN1 380 aa7.02□□□□□ -1.29
SCFD1-209ENST00000553280 PAK6Q9NQU5 681 aaPredicted RBP7.02□□□□□ -1.29
SCFD1-209ENST00000553280 MAPRE3Q9UPY8 281 aa7.02□□□□□ -1.29
SCFD1-209ENST00000553280 AKT3Q9Y243 479 aa7.02□□□□□ -1.29
SCFD1-209ENST00000553280 SLC5A6Q9Y289 635 aa7.02□□□□□ -1.29
SCFD1-209ENST00000553280 TBX1O43435 398 aa7.01□□□□□ -1.29
SCFD1-209ENST00000553280 PDE8AO60658 829 aa7.01□□□□□ -1.29
SCFD1-209ENST00000553280 PDGFRBP09619 1106 aa7.01□□□□□ -1.29
SCFD1-209ENST00000553280 CNGA1P29973 690 aa7.01□□□□□ -1.29
SCFD1-209ENST00000553280 SOX5P35711 763 aa7.01□□□□□ -1.29
SCFD1-209ENST00000553280 ZNF445P59923 1031 aa7.01□□□□□ -1.29
SCFD1-209ENST00000553280 NBPF9Q3BBW0 867 aa7.01□□□□□ -1.29
SCFD1-209ENST00000553280 TRIM61Q5EBN2 209 aa7.01□□□□□ -1.29
SCFD1-209ENST00000553280 RNF180Q86T96 592 aa7.01□□□□□ -1.29
SCFD1-209ENST00000553280 CDH24Q86UP0 819 aa7.01□□□□□ -1.29
SCFD1-209ENST00000553280 JAMLQ86YT9 394 aa7.01□□□□□ -1.29
SCFD1-209ENST00000553280 CRACR2BQ8N4Y2 399 aaPredicted RBP7.01□□□□□ -1.29
SCFD1-209ENST00000553280 PRPF38AQ8NAV1 312 aaKnown RBP7.01□□□□□ -1.29
SCFD1-209ENST00000553280 NETO1Q8TDF5 533 aa7.01□□□□□ -1.29
SCFD1-209ENST00000553280 MIPEPQ99797 713 aa7.01□□□□□ -1.29
SCFD1-209ENST00000553280 KRTAP4-12Q9BQ66 201 aa7.01□□□□□ -1.29
SCFD1-209ENST00000553280 IER2Q9BTL4 223 aa7.01□□□□□ -1.29
SCFD1-209ENST00000553280 MAGEC2Q9UBF1 373 aaPredicted RBP7.01□□□□□ -1.29
SCFD1-209ENST00000553280 DIS3Q9Y2L1 958 aaKnown RBP7.01□□□□□ -1.29
SCFD1-209ENST00000553280 GSG1L2A8MUP6 293 aa7□□□□□ -1.29
SCFD1-209ENST00000553280 ITIH2P19823 946 aa7□□□□□ -1.29
SCFD1-209ENST00000553280 NOL9Q5SY16 702 aaKnown RBP7□□□□□ -1.29
SCFD1-209ENST00000553280 LCE3BQ5TA77 95 aa7□□□□□ -1.29
SCFD1-209ENST00000553280 SPRED2Q7Z698 418 aa7□□□□□ -1.29
SCFD1-209ENST00000553280 FERMT3Q86UX7 667 aa7□□□□□ -1.29
SCFD1-209ENST00000553280 SYTL5Q8TDW5 730 aaPredicted RBP7□□□□□ -1.29
SCFD1-209ENST00000553280 CCDC140Q96MF4 163 aa7□□□□□ -1.29
SCFD1-209ENST00000553280 PRDM10Q9NQV6 1147 aa7□□□□□ -1.29
SCFD1-209ENST00000553280 PRR13Q9NZ81 148 aa7□□□□□ -1.29
SCFD1-209ENST00000553280 FBXL21Q9UKT6 434 aa7□□□□□ -1.29
SCFD1-209ENST00000553280 PCDHB12Q9Y5F1 795 aa7□□□□□ -1.29
SCFD1-209ENST00000553280 FHOD1Q9Y613 1164 aa7□□□□□ -1.29
SCFD1-209ENST00000553280 C6orf222P0C671 652 aaPredicted RBP6.99□□□□□ -1.29
SCFD1-209ENST00000553280 SDSP20132 328 aa6.99□□□□□ -1.29
SCFD1-209ENST00000553280 CD96P40200 585 aa6.99□□□□□ -1.29
SCFD1-209ENST00000553280 LRRTM3Q86VH5 581 aa6.99□□□□□ -1.29
SCFD1-209ENST00000553280 DDX42Q86XP3 938 aaKnown RBP eCLIP6.99□□□□□ -1.29
SCFD1-209ENST00000553280 WFDC3Q8IUB2 231 aa6.99□□□□□ -1.29
SCFD1-209ENST00000553280 AGBL5Q8NDL9 886 aa6.99□□□□□ -1.29
SCFD1-209ENST00000553280 ADCY4Q8NFM4 1077 aa6.99□□□□□ -1.29
SCFD1-209ENST00000553280 FAM126AQ9BYI3 521 aaPredicted RBP6.99□□□□□ -1.29
SCFD1-209ENST00000553280 HOMER2Q9NSB8 354 aa6.99□□□□□ -1.29
SCFD1-209ENST00000553280 CGGBP1Q9UFW8 167 aaPredicted RBP6.99□□□□□ -1.29
SCFD1-209ENST00000553280 RNF114Q9Y508 228 aa6.99□□□□□ -1.29
SCFD1-209ENST00000553280 DLX3O60479 287 aa6.98□□□□□ -1.29
SCFD1-209ENST00000553280 KCNH1O95259 989 aa6.98□□□□□ -1.29
SCFD1-209ENST00000553280 PARNO95453 639 aaKnown RBP6.98□□□□□ -1.29
SCFD1-209ENST00000553280 CEACAM5P06731 702 aa6.98□□□□□ -1.29
SCFD1-209ENST00000553280 HOXC12P31275 282 aa6.98□□□□□ -1.29
SCFD1-209ENST00000553280 CDKN1CP49918 316 aaPredicted RBP6.98□□□□□ -1.29
SCFD1-209ENST00000553280 OXCT1P55809 520 aa6.98□□□□□ -1.29
SCFD1-209ENST00000553280 GABREP78334 506 aa6.98□□□□□ -1.29
SCFD1-209ENST00000553280 NFKB2Q00653 900 aa6.98□□□□□ -1.29
SCFD1-209ENST00000553280 PLCL1Q15111 1095 aa6.98□□□□□ -1.29
SCFD1-209ENST00000553280 CT47A1Q5JQC4 288 aaPredicted RBP6.98□□□□□ -1.29
SCFD1-209ENST00000553280 STK11IPQ8N1F8 1099 aa6.98□□□□□ -1.29
SCFD1-209ENST00000553280 SLC7A14Q8TBB6 771 aa6.98□□□□□ -1.29
SCFD1-209ENST00000553280 BTN2A2Q8WVV5 523 aa6.98□□□□□ -1.29
SCFD1-209ENST00000553280 DDX1Q92499 740 aaKnown RBP6.98□□□□□ -1.29
SCFD1-209ENST00000553280 BRF1Q92994 677 aa6.98□□□□□ -1.29
SCFD1-209ENST00000553280 HEXIM2Q96MH2 286 aaKnown RBP6.98□□□□□ -1.29
SCFD1-209ENST00000553280 TARS2Q9BW92 718 aaKnown RBP6.98□□□□□ -1.29
SCFD1-209ENST00000553280 PRDM14Q9GZV8 571 aa6.98□□□□□ -1.29
SCFD1-209ENST00000553280 TRIM39Q9HCM9 518 aa6.98□□□□□ -1.29
SCFD1-209ENST00000553280 SFMBT1Q9UHJ3 866 aa6.98□□□□□ -1.29
SCFD1-209ENST00000553280 EFCAB14O75071 495 aa6.97□□□□□ -1.29
SCFD1-209ENST00000553280 S100BP04271 92 aaPredicted RBP6.97□□□□□ -1.29
SCFD1-209ENST00000553280 CD8BP10966 210 aa6.97□□□□□ -1.29
SCFD1-209ENST00000553280 POU3F2P20265 443 aaPredicted RBP6.97□□□□□ -1.29
SCFD1-209ENST00000553280 CYP7A1P22680 504 aa6.97□□□□□ -1.29
SCFD1-209ENST00000553280 MAP4K2Q12851 820 aa6.97□□□□□ -1.29
SCFD1-209ENST00000553280 GRB10Q13322 594 aa6.97□□□□□ -1.29
SCFD1-209ENST00000553280 GTF2IRD2BQ6EKJ0 949 aa6.97□□□□□ -1.29
SCFD1-209ENST00000553280 CBLL1Q75N03 491 aa6.97□□□□□ -1.29
SCFD1-209ENST00000553280 NOL8Q76FK4 1167 aaKnown RBP6.97□□□□□ -1.29
SCFD1-209ENST00000553280 GTF2IRD2Q86UP8 949 aa6.97□□□□□ -1.29
SCFD1-209ENST00000553280 UBR7Q8N806 425 aa6.97□□□□□ -1.29
SCFD1-209ENST00000553280 GSTCDQ8NEC7 633 aa6.97□□□□□ -1.29
SCFD1-209ENST00000553280 KCTD13Q8WZ19 329 aa6.97□□□□□ -1.29
SCFD1-209ENST00000553280 NKX2-4Q9H2Z4 354 aa6.97□□□□□ -1.29
SCFD1-209ENST00000553280 PLAGL2Q9UPG8 496 aa6.97□□□□□ -1.29
SCFD1-209ENST00000553280 ALG1L2C9J202 215 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms