RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 ZNF576Q9H609 170 aa5.18□□□□□ -1.58
LIMA1-208ENST00000551691 PPM1HQ9ULR3 514 aa5.18□□□□□ -1.58
LIMA1-208ENST00000551691 SUPT16HQ9Y5B9 1047 aaKnown RBP5.18□□□□□ -1.58
LIMA1-208ENST00000551691 MRVI1Q9Y6F6 885 aa5.18□□□□□ -1.58
LIMA1-208ENST00000551691 U3KQE9 123 aa5.18□□□□□ -1.58
LIMA1-208ENST00000551691 PNPLA7Q6ZV29 1317 aa5.18□□□□□ -1.58
LIMA1-208ENST00000551691 NEXMIFQ5QGS0 1516 aa5.18□□□□□ -1.58
LIMA1-208ENST00000551691 AATKQ6ZMQ8 1374 aa5.17□□□□□ -1.58
LIMA1-208ENST00000551691 CDC42BPGQ6DT37 1551 aa5.17□□□□□ -1.58
LIMA1-208ENST00000551691 ANKRD50Q9ULJ7 1429 aa5.17□□□□□ -1.58
LIMA1-208ENST00000551691 PHRF1Q9P1Y6 1649 aaKnown RBP5.17□□□□□ -1.58
LIMA1-208ENST00000551691 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-208ENST00000551691 B3GALT4O96024 378 aa5.17□□□□□ -1.58
LIMA1-208ENST00000551691 ITGB5P18084 799 aa5.17□□□□□ -1.58
LIMA1-208ENST00000551691 CHMP4BP1P59074 171 aa5.17□□□□□ -1.58
LIMA1-208ENST00000551691 IGBP1P78318 339 aa5.17□□□□□ -1.58
LIMA1-208ENST00000551691 JAG1P78504 1218 aa5.17□□□□□ -1.58
LIMA1-208ENST00000551691 APOBRQ0VD83 1088 aa5.17□□□□□ -1.58
LIMA1-208ENST00000551691 SEZ6L2Q6UXD5 910 aa5.17□□□□□ -1.58
LIMA1-208ENST00000551691 TPTE2Q6XPS3 522 aa5.17□□□□□ -1.58
LIMA1-208ENST00000551691 WFDC3Q8IUB2 231 aa5.17□□□□□ -1.58
LIMA1-208ENST00000551691 PLD6Q8N2A8 252 aaKnown RBP5.17□□□□□ -1.58
LIMA1-208ENST00000551691 RASGRP4Q8TDF6 673 aa5.17□□□□□ -1.58
LIMA1-208ENST00000551691 BCL7CQ8WUZ0 217 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-208ENST00000551691 ANAPC16Q96DE5 110 aa5.17□□□□□ -1.58
LIMA1-208ENST00000551691 ASIC4Q96FT7 647 aa5.17□□□□□ -1.58
LIMA1-208ENST00000551691 TMEM74Q96NL1 305 aa5.17□□□□□ -1.58
LIMA1-208ENST00000551691 RSRP1Q9BUV0 290 aa5.17□□□□□ -1.58
LIMA1-208ENST00000551691 CEP44Q9C0F1 390 aa5.17□□□□□ -1.58
LIMA1-208ENST00000551691 ADGRF5Q8IZF2 1346 aa5.17□□□□□ -1.58
LIMA1-208ENST00000551691 PEAK1Q9H792 1746 aa5.17□□□□□ -1.58
LIMA1-208ENST00000551691 NUP155O75694 1391 aa5.16□□□□□ -1.58
LIMA1-208ENST00000551691 OVOS2A0A0G2JMS6 1433 aa5.16□□□□□ -1.58
LIMA1-208ENST00000551691 OVOS2A0A0J9YW53 1432 aa5.16□□□□□ -1.58
LIMA1-208ENST00000551691 OVOS2Q6IE36 1432 aa5.16□□□□□ -1.58
LIMA1-208ENST00000551691 NRXN1Q9ULB1 1477 aa5.16□□□□□ -1.58
LIMA1-208ENST00000551691 FBXO24O75426 580 aa5.16□□□□□ -1.58
LIMA1-208ENST00000551691 PAPLNO95428 1278 aa5.16□□□□□ -1.58
LIMA1-208ENST00000551691 FAM87AP0C7U9 286 aa5.16□□□□□ -1.58
LIMA1-208ENST00000551691 COL9A2Q14055 689 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-208ENST00000551691 ZNF124Q15973 351 aa5.16□□□□□ -1.58
LIMA1-208ENST00000551691 ZNF792Q3KQV3 632 aa5.16□□□□□ -1.58
LIMA1-208ENST00000551691 LCE1DQ5T752 114 aa5.16□□□□□ -1.58
LIMA1-208ENST00000551691 FBXW10Q5XX13 1052 aa5.16□□□□□ -1.58
LIMA1-208ENST00000551691 ZNF746Q6NUN9 644 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-208ENST00000551691 ZNF662Q6ZS27 426 aa5.16□□□□□ -1.58
LIMA1-208ENST00000551691 ANKS3Q6ZW76 656 aa5.16□□□□□ -1.58
LIMA1-208ENST00000551691 COL23A1Q86Y22 540 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-208ENST00000551691 AGBL5Q8NDL9 886 aa5.16□□□□□ -1.58
LIMA1-208ENST00000551691 CRBNQ96SW2 442 aa5.16□□□□□ -1.58
LIMA1-208ENST00000551691 CCDC86Q9H6F5 360 aaKnown RBP5.16□□□□□ -1.58
LIMA1-208ENST00000551691 ZNF408Q9H9D4 720 aa5.16□□□□□ -1.58
LIMA1-208ENST00000551691 TFCP2L1Q9NZI6 479 aa5.16□□□□□ -1.58
LIMA1-208ENST00000551691 SIRPGQ9P1W8 387 aa5.16□□□□□ -1.58
LIMA1-208ENST00000551691 SLC5A6Q9Y289 635 aa5.16□□□□□ -1.58
LIMA1-208ENST00000551691 THRAP3Q9Y2W1 955 aaKnown RBP5.16□□□□□ -1.58
LIMA1-208ENST00000551691 MRPL42Q9Y6G3 142 aaKnown RBP5.16□□□□□ -1.58
LIMA1-208ENST00000551691 PPP1R12AO14974 1030 aaPredicted RBP5.15□□□□□ -1.59
LIMA1-208ENST00000551691 TMPRSS2O15393 492 aa5.15□□□□□ -1.59
LIMA1-208ENST00000551691 HSD3B2P26439 372 aa5.15□□□□□ -1.59
LIMA1-208ENST00000551691 RGS19P49795 217 aa5.15□□□□□ -1.59
LIMA1-208ENST00000551691 LBX1P52954 281 aa5.15□□□□□ -1.59
LIMA1-208ENST00000551691 CYP27A1Q02318 531 aa5.15□□□□□ -1.59
LIMA1-208ENST00000551691 FAM160A1Q05DH4 1040 aa5.15□□□□□ -1.59
LIMA1-208ENST00000551691 FAAP100Q0VG06 881 aa5.15□□□□□ -1.59
LIMA1-208ENST00000551691 FSTL1Q12841 308 aa5.15□□□□□ -1.59
LIMA1-208ENST00000551691 KIAA0319Q5VV43 1072 aa5.15□□□□□ -1.59
LIMA1-208ENST00000551691 SV2BQ7L1I2 683 aa5.15□□□□□ -1.59
LIMA1-208ENST00000551691 C16orf71Q8IYS4 520 aaPredicted RBP5.15□□□□□ -1.59
LIMA1-208ENST00000551691 NGDNQ8NEJ9 315 aaKnown RBP5.15□□□□□ -1.59
LIMA1-208ENST00000551691 ZNF296Q8WUU4 475 aaPredicted RBP5.15□□□□□ -1.59
LIMA1-208ENST00000551691 ABCB6Q9NP58 842 aa5.15□□□□□ -1.59
LIMA1-208ENST00000551691 SAMM50Q9Y512 469 aa5.15□□□□□ -1.59
LIMA1-208ENST00000551691 PRR36Q9H6K5 1346 aa5.15□□□□□ -1.59
LIMA1-208ENST00000551691 DHX57Q6P158 1386 aaKnown RBP5.15□□□□□ -1.59
LIMA1-208ENST00000551691 SBNO2Q9Y2G9 1366 aa5.15□□□□□ -1.59
LIMA1-208ENST00000551691 FMN2Q9NZ56 1722 aa5.14□□□□□ -1.59
LIMA1-208ENST00000551691 TMEM238LA0A1B0GVL6 79 aa5.14□□□□□ -1.59
LIMA1-208ENST00000551691 RNGTTO60942 597 aaKnown RBP5.14□□□□□ -1.59
LIMA1-208ENST00000551691 LEFTY1O75610 366 aa5.14□□□□□ -1.59
LIMA1-208ENST00000551691 CD8BP10966 210 aa5.14□□□□□ -1.59
LIMA1-208ENST00000551691 HCLS1P14317 486 aaPredicted RBP5.14□□□□□ -1.59
LIMA1-208ENST00000551691 MCM4P33991 863 aa5.14□□□□□ -1.59
LIMA1-208ENST00000551691 IFRD2Q12894 506 aaPredicted RBP5.14□□□□□ -1.59
LIMA1-208ENST00000551691 FAM50AQ14320 339 aaKnown RBP5.14□□□□□ -1.59
LIMA1-208ENST00000551691 PTPROQ16827 1216 aa5.14□□□□□ -1.59
LIMA1-208ENST00000551691 TNNI3KQ59H18 835 aa5.14□□□□□ -1.59
LIMA1-208ENST00000551691 HP1BP3Q5SSJ5 553 aaPredicted RBP5.14□□□□□ -1.59
LIMA1-208ENST00000551691 OGFOD3Q6PK18 319 aa5.14□□□□□ -1.59
LIMA1-208ENST00000551691 ARHGAP27Q6ZUM4 889 aa5.14□□□□□ -1.59
LIMA1-208ENST00000551691 JAZF1Q86VZ6 243 aa5.14□□□□□ -1.59
LIMA1-208ENST00000551691 POU5F2Q8N7G0 328 aa5.14□□□□□ -1.59
LIMA1-208ENST00000551691 NKD1Q969G9 470 aa5.14□□□□□ -1.59
LIMA1-208ENST00000551691 FANCD2OSQ96PS1 177 aa5.14□□□□□ -1.59
LIMA1-208ENST00000551691 FERD3LQ96RJ6 166 aa5.14□□□□□ -1.59
LIMA1-208ENST00000551691 GSX1Q9H4S2 264 aaPredicted RBP5.14□□□□□ -1.59
LIMA1-208ENST00000551691 PIDD1Q9HB75 910 aa5.14□□□□□ -1.59
LIMA1-208ENST00000551691 GINM1Q9NU53 330 aa5.14□□□□□ -1.59
LIMA1-208ENST00000551691 ADAMTS1Q9UHI8 967 aa5.14□□□□□ -1.59
LIMA1-208ENST00000551691 GPN3Q9UHW5 284 aaPredicted RBP5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms