RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 POTEB2H3BUK9 544 aa12.83□□□□□ -0.36
VTI1BP3-201ENST00000550220 DUSP11O75319 330 aaKnown RBP12.83□□□□□ -0.36
VTI1BP3-201ENST00000550220 SNAI1O95863 264 aaPredicted RBP12.83□□□□□ -0.36
VTI1BP3-201ENST00000550220 ADCYAP1R1P41586 468 aa12.83□□□□□ -0.36
VTI1BP3-201ENST00000550220 RTP1P59025 263 aa12.83□□□□□ -0.36
VTI1BP3-201ENST00000550220 AKNAD1Q5T1N1 836 aa12.83□□□□□ -0.36
VTI1BP3-201ENST00000550220 ANO1Q5XXA6 986 aa12.83□□□□□ -0.36
VTI1BP3-201ENST00000550220 NUP133Q8WUM0 1156 aa12.83□□□□□ -0.36
VTI1BP3-201ENST00000550220 ESR2Q92731 530 aa12.83□□□□□ -0.36
VTI1BP3-201ENST00000550220 DIAPH3Q9NSV4 1193 aa12.83□□□□□ -0.36
VTI1BP3-201ENST00000550220 GREB1LQ9C091 1923 aaPredicted RBP12.82□□□□□ -0.36
VTI1BP3-201ENST00000550220 MOXD2PA6NHM9 499 aa12.82□□□□□ -0.36
VTI1BP3-201ENST00000550220 ZNF213O14771 459 aa12.82□□□□□ -0.36
VTI1BP3-201ENST00000550220 IGHDP01880 384 aa12.82□□□□□ -0.36
VTI1BP3-201ENST00000550220 ACVR2BQ13705 512 aa12.82□□□□□ -0.36
VTI1BP3-201ENST00000550220 RRP12Q5JTH9 1297 aaKnown RBP12.82□□□□□ -0.36
VTI1BP3-201ENST00000550220 BTNL9Q6UXG8 535 aa12.82□□□□□ -0.36
VTI1BP3-201ENST00000550220 KCTD1Q719H9 257 aa12.82□□□□□ -0.36
VTI1BP3-201ENST00000550220 PCSK9Q8NBP7 692 aaKnown RBP12.82□□□□□ -0.36
VTI1BP3-201ENST00000550220 EXOC6Q8TAG9 804 aa12.82□□□□□ -0.36
VTI1BP3-201ENST00000550220 TRERF1Q96PN7 1200 aa12.82□□□□□ -0.36
VTI1BP3-201ENST00000550220 INCENPQ9NQS7 918 aa12.82□□□□□ -0.36
VTI1BP3-201ENST00000550220 RNF146Q9NTX7 359 aa12.82□□□□□ -0.36
VTI1BP3-201ENST00000550220 CTNNA3Q9UI47 895 aa12.82□□□□□ -0.36
VTI1BP3-201ENST00000550220 ZHX1Q9UKY1 873 aaPredicted RBP12.82□□□□□ -0.36
VTI1BP3-201ENST00000550220 PRR12Q9ULL5 1215 aa12.82□□□□□ -0.36
VTI1BP3-201ENST00000550220 ATP11BQ9Y2G3 1177 aa12.82□□□□□ -0.36
VTI1BP3-201ENST00000550220 TACC3Q9Y6A5 838 aa12.82□□□□□ -0.36
VTI1BP3-201ENST00000550220 RANBP2P49792 3224 aaKnown RBP12.81□□□□□ -0.36
VTI1BP3-201ENST00000550220 NMT2O60551 498 aa12.81□□□□□ -0.36
VTI1BP3-201ENST00000550220 PGK1P00558 417 aa12.81□□□□□ -0.36
VTI1BP3-201ENST00000550220 ICAM1P05362 532 aa12.81□□□□□ -0.36
VTI1BP3-201ENST00000550220 TAL1P17542 331 aaPredicted RBP12.81□□□□□ -0.36
VTI1BP3-201ENST00000550220 MDM2Q00987 491 aaPredicted RBP12.81□□□□□ -0.36
VTI1BP3-201ENST00000550220 CCDC96Q2M329 555 aa12.81□□□□□ -0.36
VTI1BP3-201ENST00000550220 ZNF589Q86UQ0 364 aaPredicted RBP12.81□□□□□ -0.36
VTI1BP3-201ENST00000550220 DGKHQ86XP1 1220 aa12.81□□□□□ -0.36
VTI1BP3-201ENST00000550220 FAM133AQ8N9E0 248 aa12.81□□□□□ -0.36
VTI1BP3-201ENST00000550220 FERMT2Q96AC1 680 aa12.81□□□□□ -0.36
VTI1BP3-201ENST00000550220 AGBL1Q96MI9 1066 aa12.81□□□□□ -0.36
VTI1BP3-201ENST00000550220 TOX2Q96NM4 488 aa12.81□□□□□ -0.36
VTI1BP3-201ENST00000550220 TMEM47Q9BQJ4 181 aa12.81□□□□□ -0.36
VTI1BP3-201ENST00000550220 HOMER2Q9NSB8 354 aa12.81□□□□□ -0.36
VTI1BP3-201ENST00000550220 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.81□□□□□ -0.36
VTI1BP3-201ENST00000550220 LOC102724159A0A0B4J2E5 919 aa12.8□□□□□ -0.36
VTI1BP3-201ENST00000550220 ADAMTS4O75173 837 aa12.8□□□□□ -0.36
VTI1BP3-201ENST00000550220 ALAS1P13196 640 aa12.8□□□□□ -0.36
VTI1BP3-201ENST00000550220 CST5P28325 142 aaPredicted RBP12.8□□□□□ -0.36
VTI1BP3-201ENST00000550220 PWP2Q15269 919 aaKnown RBP12.8□□□□□ -0.36
VTI1BP3-201ENST00000550220 CWC27Q6UX04 472 aaKnown RBP12.8□□□□□ -0.36
VTI1BP3-201ENST00000550220 ARMCX2Q7L311 632 aa12.8□□□□□ -0.36
VTI1BP3-201ENST00000550220 IQCA1Q86XH1 822 aa12.8□□□□□ -0.36
VTI1BP3-201ENST00000550220 KLHDC9Q8NEP7 349 aa12.8□□□□□ -0.36
VTI1BP3-201ENST00000550220 GLT1D1Q96MS3 346 aa12.8□□□□□ -0.36
VTI1BP3-201ENST00000550220 MAF1Q9H063 256 aa12.8□□□□□ -0.36
VTI1BP3-201ENST00000550220 A1CFQ9NQ94 594 aaKnown RBP12.8□□□□□ -0.36
VTI1BP3-201ENST00000550220 ADD3Q9UEY8 706 aaKnown RBP12.8□□□□□ -0.36
VTI1BP3-201ENST00000550220 CCPG1Q9ULG6 757 aa12.8□□□□□ -0.36
VTI1BP3-201ENST00000550220 ZNF536O15090 1300 aa12.8□□□□□ -0.36
VTI1BP3-201ENST00000550220 ACLYP53396 1101 aa12.79□□□□□ -0.36
VTI1BP3-201ENST00000550220 GJA9P57773 515 aa12.79□□□□□ -0.36
VTI1BP3-201ENST00000550220 HAND2P61296 217 aa12.79□□□□□ -0.36
VTI1BP3-201ENST00000550220 NKX3-2P78367 333 aa12.79□□□□□ -0.36
VTI1BP3-201ENST00000550220 IMMTQ16891 758 aaKnown RBP12.79□□□□□ -0.36
VTI1BP3-201ENST00000550220 CCDC144BQ3MJ40 725 aa12.79□□□□□ -0.36
VTI1BP3-201ENST00000550220 TRIM60Q495X7 471 aa12.79□□□□□ -0.36
VTI1BP3-201ENST00000550220 GPATCH4Q5T3I0 446 aaKnown RBP12.79□□□□□ -0.36
VTI1BP3-201ENST00000550220 SYDE2Q5VT97 1194 aa12.79□□□□□ -0.36
VTI1BP3-201ENST00000550220 CCDC174Q6PII3 467 aa12.79□□□□□ -0.36
VTI1BP3-201ENST00000550220 CCDC144CPQ8IYA2 1237 aa12.79□□□□□ -0.36
VTI1BP3-201ENST00000550220 MPHOSPH6Q99547 160 aaKnown RBP12.79□□□□□ -0.36
VTI1BP3-201ENST00000550220 DSCC1Q9BVC3 393 aa12.79□□□□□ -0.36
VTI1BP3-201ENST00000550220 SEZ6LQ9BYH1 1024 aa12.79□□□□□ -0.36
VTI1BP3-201ENST00000550220 RANBP17Q9H2T7 1088 aaKnown RBP12.79□□□□□ -0.36
VTI1BP3-201ENST00000550220 PRDM5Q9NQX1 630 aaPredicted RBP12.79□□□□□ -0.36
VTI1BP3-201ENST00000550220 STARD7Q9NQZ5 370 aa12.79□□□□□ -0.36
VTI1BP3-201ENST00000550220 ELP1O95163 1332 aa12.79□□□□□ -0.36
VTI1BP3-201ENST00000550220 MROH7Q68CQ1 1323 aa12.79□□□□□ -0.36
VTI1BP3-201ENST00000550220 A0A1W2PQ45 241 aaPredicted RBP12.78□□□□□ -0.36
VTI1BP3-201ENST00000550220 A0A1W2PQY0 241 aa12.78□□□□□ -0.36
VTI1BP3-201ENST00000550220 DCDC2CA8MYV0 355 aa12.78□□□□□ -0.36
VTI1BP3-201ENST00000550220 B4DLN1 442 aa12.78□□□□□ -0.36
VTI1BP3-201ENST00000550220 SOX1O00570 391 aaPredicted RBP12.78□□□□□ -0.36
VTI1BP3-201ENST00000550220 CLTBP09497 229 aa12.78□□□□□ -0.36
VTI1BP3-201ENST00000550220 MRPL12P52815 198 aaKnown RBP12.78□□□□□ -0.36
VTI1BP3-201ENST00000550220 CNTN2Q02246 1040 aa12.78□□□□□ -0.36
VTI1BP3-201ENST00000550220 TLE2Q04725 743 aa12.78□□□□□ -0.36
VTI1BP3-201ENST00000550220 KCNA10Q16322 511 aa12.78□□□□□ -0.36
VTI1BP3-201ENST00000550220 IQSEC1Q6DN90 963 aa12.78□□□□□ -0.36
VTI1BP3-201ENST00000550220 CCSAPQ6IQ19 270 aaPredicted RBP12.78□□□□□ -0.36
VTI1BP3-201ENST00000550220 ANKRD33Q7Z3H0 272 aa12.78□□□□□ -0.36
VTI1BP3-201ENST00000550220 FGD4Q96M96 766 aa12.78□□□□□ -0.36
VTI1BP3-201ENST00000550220 KRT23Q9C075 422 aa12.78□□□□□ -0.36
VTI1BP3-201ENST00000550220 CNNM2Q9H8M5 875 aa12.78□□□□□ -0.36
VTI1BP3-201ENST00000550220 CYP39A1Q9NYL5 469 aa12.78□□□□□ -0.36
VTI1BP3-201ENST00000550220 MTMR7Q9Y216 660 aa12.78□□□□□ -0.36
VTI1BP3-201ENST00000550220 Q9Y3F1 56 aa12.78□□□□□ -0.36
VTI1BP3-201ENST00000550220 SUPT16HQ9Y5B9 1047 aaKnown RBP12.78□□□□□ -0.36
VTI1BP3-201ENST00000550220 SYNRGQ9UMZ2 1314 aa12.78□□□□□ -0.36
VTI1BP3-201ENST00000550220 ZEB2O60315 1214 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms