RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 PLA2G6O60733 806 aa19.27■□□□□ 0.68
VPS29-207ENST00000549970 AKR1A1P14550 325 aa19.27■□□□□ 0.68
VPS29-207ENST00000549970 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.27■□□□□ 0.68
VPS29-207ENST00000549970 MSL3Q8N5Y2 521 aaKnown RBP19.27■□□□□ 0.68
VPS29-207ENST00000549970 DCAF4Q8WV16 495 aa19.27■□□□□ 0.68
VPS29-207ENST00000549970 LENG1Q96BZ8 264 aaPredicted RBP19.27■□□□□ 0.68
VPS29-207ENST00000549970 TMEM47Q9BQJ4 181 aa19.27■□□□□ 0.68
VPS29-207ENST00000549970 ACAD9Q9H845 621 aa19.27■□□□□ 0.68
VPS29-207ENST00000549970 RNF146Q9NTX7 359 aa19.27■□□□□ 0.68
VPS29-207ENST00000549970 ZHX1Q9UKY1 873 aaPredicted RBP19.27■□□□□ 0.68
VPS29-207ENST00000549970 PRR12Q9ULL5 1215 aa19.27■□□□□ 0.68
VPS29-207ENST00000549970 SYNGAP1Q96PV0 1343 aa19.26■□□□□ 0.67
VPS29-207ENST00000549970 HIP1O00291 1037 aa19.26■□□□□ 0.67
VPS29-207ENST00000549970 SNAI1O95863 264 aaPredicted RBP19.26■□□□□ 0.67
VPS29-207ENST00000549970 PGK1P00558 417 aa19.26■□□□□ 0.67
VPS29-207ENST00000549970 TOP1P11387 765 aaKnown RBP19.26■□□□□ 0.67
VPS29-207ENST00000549970 ALAS1P13196 640 aa19.26■□□□□ 0.67
VPS29-207ENST00000549970 BMP8BP34820 402 aa19.26■□□□□ 0.67
VPS29-207ENST00000549970 ADCYAP1R1P41586 468 aa19.26■□□□□ 0.67
VPS29-207ENST00000549970 RTP1P59025 263 aa19.26■□□□□ 0.67
VPS29-207ENST00000549970 MAMDC4Q6UXC1 1216 aa19.26■□□□□ 0.67
VPS29-207ENST00000549970 FERMT2Q96AC1 680 aa19.26■□□□□ 0.67
VPS29-207ENST00000549970 RNF41Q9H4P4 317 aaPredicted RBP19.26■□□□□ 0.67
VPS29-207ENST00000549970 TCP11L1Q9NUJ3 509 aa19.26■□□□□ 0.67
VPS29-207ENST00000549970 ATP11BQ9Y2G3 1177 aa19.26■□□□□ 0.67
VPS29-207ENST00000549970 MCM3APO60318 1980 aa19.26■□□□□ 0.67
VPS29-207ENST00000549970 ZNF213O14771 459 aa19.25■□□□□ 0.67
VPS29-207ENST00000549970 PCP11498 1178 aaKnown RBP19.25■□□□□ 0.67
VPS29-207ENST00000549970 PDE4AP27815 886 aa19.25■□□□□ 0.67
VPS29-207ENST00000549970 TTBK2Q6IQ55 1244 aa19.25■□□□□ 0.67
VPS29-207ENST00000549970 ZNF467Q7Z7K2 595 aaPredicted RBP19.25■□□□□ 0.67
VPS29-207ENST00000549970 FGD4Q96M96 766 aa19.25■□□□□ 0.67
VPS29-207ENST00000549970 TRERF1Q96PN7 1200 aa19.25■□□□□ 0.67
VPS29-207ENST00000549970 NEDD4P46934 1319 aa19.25■□□□□ 0.67
VPS29-207ENST00000549970 FRMPD2Q68DX3 1309 aaPredicted RBP19.25■□□□□ 0.67
VPS29-207ENST00000549970 LAMA4Q16363 1823 aa19.24■□□□□ 0.67
VPS29-207ENST00000549970 SLC16A2P36021 539 aa19.24■□□□□ 0.67
VPS29-207ENST00000549970 MDM2Q00987 491 aaPredicted RBP19.24■□□□□ 0.67
VPS29-207ENST00000549970 CNTN2Q02246 1040 aa19.24■□□□□ 0.67
VPS29-207ENST00000549970 TKFCQ3LXA3 575 aa19.24■□□□□ 0.67
VPS29-207ENST00000549970 SLC39A5Q6ZMH5 540 aa19.24■□□□□ 0.67
VPS29-207ENST00000549970 RNF180Q86T96 592 aa19.24■□□□□ 0.67
VPS29-207ENST00000549970 UBE2OQ9C0C9 1292 aaKnown RBP19.24■□□□□ 0.67
VPS29-207ENST00000549970 GPCPD1Q9NPB8 672 aa19.24■□□□□ 0.67
VPS29-207ENST00000549970 A1CFQ9NQ94 594 aaKnown RBP19.24■□□□□ 0.67
VPS29-207ENST00000549970 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.24■□□□□ 0.67
VPS29-207ENST00000549970 CCPG1Q9ULG6 757 aa19.24■□□□□ 0.67
VPS29-207ENST00000549970 POTEB2H3BUK9 544 aa19.23■□□□□ 0.67
VPS29-207ENST00000549970 SOX1O00570 391 aaPredicted RBP19.23■□□□□ 0.67
VPS29-207ENST00000549970 ARMCX2Q7L311 632 aa19.23■□□□□ 0.67
VPS29-207ENST00000549970 ESR2Q92731 530 aa19.23■□□□□ 0.67
VPS29-207ENST00000549970 ZKSCAN3Q9BRR0 538 aa19.23■□□□□ 0.67
VPS29-207ENST00000549970 FAM184BQ9ULE4 1060 aa19.23■□□□□ 0.67
VPS29-207ENST00000549970 PDHBP11177 359 aa19.22■□□□□ 0.67
VPS29-207ENST00000549970 GSPT1P15170 499 aaKnown RBP19.22■□□□□ 0.67
VPS29-207ENST00000549970 ACVR2BQ13705 512 aa19.22■□□□□ 0.67
VPS29-207ENST00000549970 TRIM60Q495X7 471 aa19.22■□□□□ 0.67
VPS29-207ENST00000549970 MUM1L1Q5H9M0 696 aa19.22■□□□□ 0.67
VPS29-207ENST00000549970 SYDE2Q5VT97 1194 aa19.22■□□□□ 0.67
VPS29-207ENST00000549970 CCDC144CPQ8IYA2 1237 aa19.22■□□□□ 0.67
VPS29-207ENST00000549970 FAM133AQ8N9E0 248 aa19.22■□□□□ 0.67
VPS29-207ENST00000549970 TTC14Q96N46 770 aa19.22■□□□□ 0.67
VPS29-207ENST00000549970 DSCC1Q9BVC3 393 aa19.22■□□□□ 0.67
VPS29-207ENST00000549970 RANBP17Q9H2T7 1088 aaKnown RBP19.22■□□□□ 0.67
VPS29-207ENST00000549970 ABHD16BQ9H3Z7 469 aa19.22■□□□□ 0.67
VPS29-207ENST00000549970 PRKAG2Q9UGJ0 569 aa19.22■□□□□ 0.67
VPS29-207ENST00000549970 PHF24Q9UPV7 400 aa19.22■□□□□ 0.67
VPS29-207ENST00000549970 SYNRGQ9UMZ2 1314 aa19.22■□□□□ 0.67
VPS29-207ENST00000549970 ADAMTS4O75173 837 aa19.21■□□□□ 0.67
VPS29-207ENST00000549970 TTC22Q5TAA0 569 aa19.21■□□□□ 0.67
VPS29-207ENST00000549970 BTNL9Q6UXG8 535 aa19.21■□□□□ 0.67
VPS29-207ENST00000549970 TDHQ8IZJ6 230 aa19.21■□□□□ 0.67
VPS29-207ENST00000549970 LRCH3Q96II8 777 aa19.21■□□□□ 0.67
VPS29-207ENST00000549970 PRDM5Q9NQX1 630 aaPredicted RBP19.21■□□□□ 0.67
VPS29-207ENST00000549970 SOWAHBA6NEL2 793 aa19.2■□□□□ 0.66
VPS29-207ENST00000549970 KDM4AO75164 1064 aa19.2■□□□□ 0.66
VPS29-207ENST00000549970 ICAM1P05362 532 aa19.2■□□□□ 0.66
VPS29-207ENST00000549970 SNX17Q15036 470 aa19.2■□□□□ 0.66
VPS29-207ENST00000549970 IMMTQ16891 758 aaKnown RBP19.2■□□□□ 0.66
VPS29-207ENST00000549970 CCDC144BQ3MJ40 725 aa19.2■□□□□ 0.66
VPS29-207ENST00000549970 NSMFQ6X4W1 530 aa19.2■□□□□ 0.66
VPS29-207ENST00000549970 LBHD1Q9BQE6 289 aaPredicted RBP19.2■□□□□ 0.66
VPS29-207ENST00000549970 IL25Q9H293 177 aa19.2■□□□□ 0.66
VPS29-207ENST00000549970 A0A1W2PQ45 241 aaPredicted RBP19.19■□□□□ 0.66
VPS29-207ENST00000549970 A0A1W2PQY0 241 aa19.19■□□□□ 0.66
VPS29-207ENST00000549970 B4E1Z4 1266 aa19.19■□□□□ 0.66
VPS29-207ENST00000549970 ADCY6O43306 1168 aa19.19■□□□□ 0.66
VPS29-207ENST00000549970 DUSP11O75319 330 aaKnown RBP19.19■□□□□ 0.66
VPS29-207ENST00000549970 ZNF543Q08ER8 600 aa19.19■□□□□ 0.66
VPS29-207ENST00000549970 CYP39A1Q9NYL5 469 aa19.19■□□□□ 0.66
VPS29-207ENST00000549970 MYADML2A6NDP7 307 aa19.18■□□□□ 0.66
VPS29-207ENST00000549970 C6orf222P0C671 652 aaPredicted RBP19.18■□□□□ 0.66
VPS29-207ENST00000549970 IQCA1Q86XH1 822 aa19.18■□□□□ 0.66
VPS29-207ENST00000549970 DGKHQ86XP1 1220 aa19.18■□□□□ 0.66
VPS29-207ENST00000549970 KATNBL1Q9H079 304 aa19.18■□□□□ 0.66
VPS29-207ENST00000549970 CTNNA3Q9UI47 895 aa19.18■□□□□ 0.66
VPS29-207ENST00000549970 DDX49Q9Y6V7 483 aaKnown RBP19.18■□□□□ 0.66
VPS29-207ENST00000549970 LTBP2Q14767 1821 aa19.17■□□□□ 0.66
VPS29-207ENST00000549970 ASB14A6NK59 587 aa19.17■□□□□ 0.66
VPS29-207ENST00000549970 GOLGA8HP0CJ92 632 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms