RNA–Protein interactions for RNA: ENST00000549274.1

SMARCD1-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 3

Gene SMARCD1, Length 611 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-206ENST00000549274 RXRAP19793 462 aa11.29□□□□□ -0.6
SMARCD1-206ENST00000549274 CDC27P30260 824 aa11.29□□□□□ -0.6
SMARCD1-206ENST00000549274 ADD1P35611 737 aaKnown RBP11.29□□□□□ -0.6
SMARCD1-206ENST00000549274 HERVK_113P62684 666 aa11.29□□□□□ -0.6
SMARCD1-206ENST00000549274 GRM1Q13255 1194 aa11.29□□□□□ -0.6
SMARCD1-206ENST00000549274 MOGSQ13724 837 aa11.29□□□□□ -0.6
SMARCD1-206ENST00000549274 TRIM29Q14134 588 aa11.29□□□□□ -0.6
SMARCD1-206ENST00000549274 TAF1CQ15572 869 aaPredicted RBP11.29□□□□□ -0.6
SMARCD1-206ENST00000549274 TREML2Q5T2D2 321 aa11.29□□□□□ -0.6
SMARCD1-206ENST00000549274 MCTP2Q6DN12 878 aa11.29□□□□□ -0.6
SMARCD1-206ENST00000549274 GPAT2Q6NUI2 795 aa11.29□□□□□ -0.6
SMARCD1-206ENST00000549274 ADGRF4Q8IZF3 695 aa11.29□□□□□ -0.6
SMARCD1-206ENST00000549274 MTMR8Q96EF0 704 aa11.29□□□□□ -0.6
SMARCD1-206ENST00000549274 NUP88Q99567 741 aaPredicted RBP11.29□□□□□ -0.6
SMARCD1-206ENST00000549274 BEGAINQ9BUH8 593 aa11.29□□□□□ -0.6
SMARCD1-206ENST00000549274 AMNQ9BXJ7 453 aa11.29□□□□□ -0.6
SMARCD1-206ENST00000549274 RANBP17Q9H2T7 1088 aaKnown RBP11.29□□□□□ -0.6
SMARCD1-206ENST00000549274 SLC38A10Q9HBR0 1119 aa11.29□□□□□ -0.6
SMARCD1-206ENST00000549274 CWC22Q9HCG8 908 aaKnown RBP11.29□□□□□ -0.6
SMARCD1-206ENST00000549274 SAGE1Q9NXZ1 904 aa11.29□□□□□ -0.6
SMARCD1-206ENST00000549274 FBXO40Q9UH90 709 aa11.29□□□□□ -0.6
SMARCD1-206ENST00000549274 PRR12Q9ULL5 1215 aa11.29□□□□□ -0.6
SMARCD1-206ENST00000549274 ADAMTS5Q9UNA0 930 aa11.29□□□□□ -0.6
SMARCD1-206ENST00000549274 RLFQ13129 1914 aa11.29□□□□□ -0.6
SMARCD1-206ENST00000549274 SPDYE16A6NNV3 312 aaPredicted RBP11.28□□□□□ -0.6
SMARCD1-206ENST00000549274 VWA5AO00534 786 aa11.28□□□□□ -0.6
SMARCD1-206ENST00000549274 ICAM1P05362 532 aa11.28□□□□□ -0.6
SMARCD1-206ENST00000549274 GOLGA8HP0CJ92 632 aa11.28□□□□□ -0.6
SMARCD1-206ENST00000549274 VEGFBP49765 207 aa11.28□□□□□ -0.6
SMARCD1-206ENST00000549274 ARHGEF6Q15052 776 aa11.28□□□□□ -0.6
SMARCD1-206ENST00000549274 CDC37Q16543 378 aaPredicted RBP11.28□□□□□ -0.6
SMARCD1-206ENST00000549274 FAM110CQ1W6H9 321 aa11.28□□□□□ -0.6
SMARCD1-206ENST00000549274 KIAA1755Q5JYT7 1200 aa11.28□□□□□ -0.6
SMARCD1-206ENST00000549274 GALNT17Q6IS24 598 aa11.28□□□□□ -0.6
SMARCD1-206ENST00000549274 FBXO11Q86XK2 927 aa11.28□□□□□ -0.6
SMARCD1-206ENST00000549274 STAG2Q8N3U4 1231 aa11.28□□□□□ -0.6
SMARCD1-206ENST00000549274 SRBD1Q8N5C6 995 aaKnown RBP11.28□□□□□ -0.6
SMARCD1-206ENST00000549274 CFHR5Q9BXR6 569 aa11.28□□□□□ -0.6
SMARCD1-206ENST00000549274 SLC26A6Q9BXS9 759 aa11.28□□□□□ -0.6
SMARCD1-206ENST00000549274 TEX13BQ9BXU2 312 aa11.28□□□□□ -0.6
SMARCD1-206ENST00000549274 NCOA5Q9HCD5 579 aaKnown RBP11.28□□□□□ -0.6
SMARCD1-206ENST00000549274 BRMS1Q9HCU9 246 aa11.28□□□□□ -0.6
SMARCD1-206ENST00000549274 SH3GLB2Q9NR46 395 aa11.28□□□□□ -0.6
SMARCD1-206ENST00000549274 FAM217BQ9NTX9 383 aaPredicted RBP11.28□□□□□ -0.6
SMARCD1-206ENST00000549274 MAP3K20Q9NYL2 800 aaKnown RBP11.28□□□□□ -0.6
SMARCD1-206ENST00000549274 ORC3Q9UBD5 711 aaPredicted RBP11.28□□□□□ -0.6
SMARCD1-206ENST00000549274 MRPL11Q9Y3B7 192 aaKnown RBP11.28□□□□□ -0.6
SMARCD1-206ENST00000549274 RBM19Q9Y4C8 960 aaKnown RBP11.28□□□□□ -0.6
SMARCD1-206ENST00000549274 ABCB11O95342 1321 aa11.28□□□□□ -0.6
SMARCD1-206ENST00000549274 COL11A1P12107 1806 aaPredicted RBP11.28□□□□□ -0.6
SMARCD1-206ENST00000549274 PTPDC1A2A3K4 754 aa11.27□□□□□ -0.61
SMARCD1-206ENST00000549274 PLEKHA8P1O95397 391 aa11.27□□□□□ -0.61
SMARCD1-206ENST00000549274 CD2BP2O95400 341 aaKnown RBP11.27□□□□□ -0.61
SMARCD1-206ENST00000549274 LARGE1O95461 756 aa11.27□□□□□ -0.61
SMARCD1-206ENST00000549274 SCG2P13521 617 aa11.27□□□□□ -0.61
SMARCD1-206ENST00000549274 CALML3P27482 149 aa11.27□□□□□ -0.61
SMARCD1-206ENST00000549274 NTRK3Q16288 839 aa11.27□□□□□ -0.61
SMARCD1-206ENST00000549274 PFKFB3Q16875 520 aaPredicted RBP11.27□□□□□ -0.61
SMARCD1-206ENST00000549274 MCF2L2Q86YR7 1114 aa11.27□□□□□ -0.61
SMARCD1-206ENST00000549274 RAB11FIP4Q86YS3 637 aa11.27□□□□□ -0.61
SMARCD1-206ENST00000549274 CCAR1Q8IX12 1150 aaKnown RBP11.27□□□□□ -0.61
SMARCD1-206ENST00000549274 NECAB1Q8N987 351 aa11.27□□□□□ -0.61
SMARCD1-206ENST00000549274 NSUN7Q8NE18 718 aaKnown RBP11.27□□□□□ -0.61
SMARCD1-206ENST00000549274 SHCBP1Q8NEM2 672 aa11.27□□□□□ -0.61
SMARCD1-206ENST00000549274 SMARCC2Q8TAQ2 1214 aa11.27□□□□□ -0.61
SMARCD1-206ENST00000549274 BICD2Q8TD16 824 aa11.27□□□□□ -0.61
SMARCD1-206ENST00000549274 LARP6Q9BRS8 491 aaKnown RBP11.27□□□□□ -0.61
SMARCD1-206ENST00000549274 UBA5Q9GZZ9 404 aa11.27□□□□□ -0.61
SMARCD1-206ENST00000549274 JMJD4Q9H9V9 463 aa11.27□□□□□ -0.61
SMARCD1-206ENST00000549274 MORF4L1Q9UBU8 362 aa11.27□□□□□ -0.61
SMARCD1-206ENST00000549274 RBBP6Q7Z6E9 1792 aaKnown RBP11.26□□□□□ -0.61
SMARCD1-206ENST00000549274 TLR2O60603 784 aa11.26□□□□□ -0.61
SMARCD1-206ENST00000549274 GNA11P29992 359 aa11.26□□□□□ -0.61
SMARCD1-206ENST00000549274 SLC16A2P36021 539 aa11.26□□□□□ -0.61
SMARCD1-206ENST00000549274 FUT2Q10981 343 aa11.26□□□□□ -0.61
SMARCD1-206ENST00000549274 SAFBQ15424 915 aaKnown RBP eCLIP11.26□□□□□ -0.61
SMARCD1-206ENST00000549274 QRICH1Q2TAL8 776 aa11.26□□□□□ -0.61
SMARCD1-206ENST00000549274 NOM1Q5C9Z4 860 aaKnown RBP11.26□□□□□ -0.61
SMARCD1-206ENST00000549274 TTBK2Q6IQ55 1244 aa11.26□□□□□ -0.61
SMARCD1-206ENST00000549274 NBPF11Q86T75 865 aa11.26□□□□□ -0.61
SMARCD1-206ENST00000549274 HOMER1Q86YM7 354 aa11.26□□□□□ -0.61
SMARCD1-206ENST00000549274 FAM43AQ8N2R8 423 aa11.26□□□□□ -0.61
SMARCD1-206ENST00000549274 CHST13Q8NET6 341 aa11.26□□□□□ -0.61
SMARCD1-206ENST00000549274 GPRC5AQ8NFJ5 357 aa11.26□□□□□ -0.61
SMARCD1-206ENST00000549274 ATG4CQ96DT6 458 aa11.26□□□□□ -0.61
SMARCD1-206ENST00000549274 P2RX7Q99572 595 aaKnown RBP11.26□□□□□ -0.61
SMARCD1-206ENST00000549274 MROH8Q9H579 483 aa11.26□□□□□ -0.61
SMARCD1-206ENST00000549274 VAT1LQ9HCJ6 419 aa11.26□□□□□ -0.61
SMARCD1-206ENST00000549274 FBXO28Q9NVF7 368 aa11.26□□□□□ -0.61
SMARCD1-206ENST00000549274 BARHL2Q9NY43 387 aa11.26□□□□□ -0.61
SMARCD1-206ENST00000549274 CCPG1Q9ULG6 757 aa11.26□□□□□ -0.61
SMARCD1-206ENST00000549274 V9GY48 417 aaPredicted RBP11.26□□□□□ -0.61
SMARCD1-206ENST00000549274 ESYT2A0FGR8 921 aa11.25□□□□□ -0.61
SMARCD1-206ENST00000549274 IGF2BP3O00425 579 aaKnown RBP eCLIP11.25□□□□□ -0.61
SMARCD1-206ENST00000549274 CYTH3O43739 400 aa11.25□□□□□ -0.61
SMARCD1-206ENST00000549274 MAPK4P31152 587 aa11.25□□□□□ -0.61
SMARCD1-206ENST00000549274 STAT3P40763 770 aa11.25□□□□□ -0.61
SMARCD1-206ENST00000549274 NAPAP54920 295 aa11.25□□□□□ -0.61
SMARCD1-206ENST00000549274 ERVK-9P63128 1117 aa11.25□□□□□ -0.61
SMARCD1-206ENST00000549274 ERVK-24P63145 666 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms