RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.35■□□□□ 0.05
SCAF11-208ENST00000546534 USP17L12C9JPN9 530 aa15.35■□□□□ 0.05
SCAF11-208ENST00000546534 USP17L21D6R901 530 aa15.35■□□□□ 0.05
SCAF11-208ENST00000546534 MBD4O95243 580 aa15.35■□□□□ 0.05
SCAF11-208ENST00000546534 CYP2C18P33260 490 aa15.35■□□□□ 0.05
SCAF11-208ENST00000546534 PDAP1Q13442 181 aaKnown RBP15.35■□□□□ 0.05
SCAF11-208ENST00000546534 ACVR2BQ13705 512 aa15.35■□□□□ 0.05
SCAF11-208ENST00000546534 GNASQ5JWF2 1037 aa15.35■□□□□ 0.05
SCAF11-208ENST00000546534 SNRNP48Q6IEG0 339 aaKnown RBP15.35■□□□□ 0.05
SCAF11-208ENST00000546534 C16orf86Q6ZW13 317 aa15.35■□□□□ 0.05
SCAF11-208ENST00000546534 ITPRIPQ8IWB1 547 aa15.35■□□□□ 0.05
SCAF11-208ENST00000546534 IL27Q8NEV9 243 aa15.35■□□□□ 0.05
SCAF11-208ENST00000546534 HERVK_113Q902F9 699 aa15.35■□□□□ 0.05
SCAF11-208ENST00000546534 ZFP91Q96JP5 570 aaPredicted RBP15.35■□□□□ 0.05
SCAF11-208ENST00000546534 NUP88Q99567 741 aaPredicted RBP15.35■□□□□ 0.05
SCAF11-208ENST00000546534 UPF3AQ9H1J1 476 aaKnown RBP15.35■□□□□ 0.05
SCAF11-208ENST00000546534 SLC28A3Q9HAS3 691 aa15.35■□□□□ 0.05
SCAF11-208ENST00000546534 IL23AQ9NPF7 189 aa15.35■□□□□ 0.05
SCAF11-208ENST00000546534 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.35■□□□□ 0.05
SCAF11-208ENST00000546534 YBX2Q9Y2T7 364 aaKnown RBP15.35■□□□□ 0.05
SCAF11-208ENST00000546534 TLR3O15455 904 aaKnown RBP15.34■□□□□ 0.05
SCAF11-208ENST00000546534 SLC4A3P48751 1232 aa15.34■□□□□ 0.05
SCAF11-208ENST00000546534 GJA9P57773 515 aa15.34■□□□□ 0.05
SCAF11-208ENST00000546534 CCDC144BQ3MJ40 725 aa15.34■□□□□ 0.05
SCAF11-208ENST00000546534 CEP85Q6P2H3 762 aa15.34■□□□□ 0.05
SCAF11-208ENST00000546534 NECAB3Q96P71 396 aaPredicted RBP15.34■□□□□ 0.05
SCAF11-208ENST00000546534 SLF1Q9BQI6 1058 aa15.34■□□□□ 0.05
SCAF11-208ENST00000546534 SPC25Q9HBM1 224 aa15.34■□□□□ 0.05
SCAF11-208ENST00000546534 CTAGE5O15320 804 aa15.33■□□□□ 0.04
SCAF11-208ENST00000546534 CD4P01730 458 aa15.33■□□□□ 0.04
SCAF11-208ENST00000546534 FGBP02675 491 aa15.33■□□□□ 0.04
SCAF11-208ENST00000546534 RLBP1P12271 317 aa15.33■□□□□ 0.04
SCAF11-208ENST00000546534 CPXCR1Q8N123 301 aa15.33■□□□□ 0.04
SCAF11-208ENST00000546534 RHPN1Q8TCX5 695 aa15.33■□□□□ 0.04
SCAF11-208ENST00000546534 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.33■□□□□ 0.04
SCAF11-208ENST00000546534 FGD4Q96M96 766 aa15.33■□□□□ 0.04
SCAF11-208ENST00000546534 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.33■□□□□ 0.04
SCAF11-208ENST00000546534 ABHD16BQ9H3Z7 469 aa15.33■□□□□ 0.04
SCAF11-208ENST00000546534 NCOR1O75376 2440 aa15.32■□□□□ 0.04
SCAF11-208ENST00000546534 ATP2A1O14983 1001 aa15.32■□□□□ 0.04
SCAF11-208ENST00000546534 BMP1P13497 986 aa15.32■□□□□ 0.04
SCAF11-208ENST00000546534 ADD2P35612 726 aa15.32■□□□□ 0.04
SCAF11-208ENST00000546534 OTOP2Q7RTS6 562 aa15.32■□□□□ 0.04
SCAF11-208ENST00000546534 AMOTL1Q8IY63 956 aa15.32■□□□□ 0.04
SCAF11-208ENST00000546534 FTSJ3Q8IY81 847 aaKnown RBP15.32■□□□□ 0.04
SCAF11-208ENST00000546534 BBXQ8WY36 941 aaPredicted RBP15.32■□□□□ 0.04
SCAF11-208ENST00000546534 MS4A3Q96HJ5 214 aa15.32■□□□□ 0.04
SCAF11-208ENST00000546534 MTIF3Q9H2K0 278 aaKnown RBP15.32■□□□□ 0.04
SCAF11-208ENST00000546534 BDP1A6H8Y1 2624 aa15.32■□□□□ 0.04
SCAF11-208ENST00000546534 UMODL1Q5DID0 1318 aa15.32■□□□□ 0.04
SCAF11-208ENST00000546534 MYO9BQ13459 2157 aa15.32■□□□□ 0.04
SCAF11-208ENST00000546534 MYH8P13535 1937 aa15.31■□□□□ 0.04
SCAF11-208ENST00000546534 STK25O00506 426 aa15.31■□□□□ 0.04
SCAF11-208ENST00000546534 CHGBP05060 677 aa15.31■□□□□ 0.04
SCAF11-208ENST00000546534 RABGGTBP53611 331 aa15.31■□□□□ 0.04
SCAF11-208ENST00000546534 BEX3Q00994 111 aa15.31■□□□□ 0.04
SCAF11-208ENST00000546534 TFF2Q03403 129 aa15.31■□□□□ 0.04
SCAF11-208ENST00000546534 CTR9Q6PD62 1173 aa15.31■□□□□ 0.04
SCAF11-208ENST00000546534 ARMCX2Q7L311 632 aa15.31■□□□□ 0.04
SCAF11-208ENST00000546534 MICALL1Q8N3F8 863 aa15.31■□□□□ 0.04
SCAF11-208ENST00000546534 PRPF38AQ8NAV1 312 aaKnown RBP15.31■□□□□ 0.04
SCAF11-208ENST00000546534 C1QTNF1Q9BXJ1 281 aa15.31■□□□□ 0.04
SCAF11-208ENST00000546534 HIPK3Q9H422 1215 aa15.31■□□□□ 0.04
SCAF11-208ENST00000546534 RAVER2Q9HCJ3 691 aaKnown RBP15.31■□□□□ 0.04
SCAF11-208ENST00000546534 F5H6K3 240 aa15.3■□□□□ 0.04
SCAF11-208ENST00000546534 ZBED4O75132 1171 aa15.3■□□□□ 0.04
SCAF11-208ENST00000546534 NDUFB10O96000 172 aa15.3■□□□□ 0.04
SCAF11-208ENST00000546534 PSEN1P49768 467 aa15.3■□□□□ 0.04
SCAF11-208ENST00000546534 CCL23P55773 120 aa15.3■□□□□ 0.04
SCAF11-208ENST00000546534 NKX3-2P78367 333 aa15.3■□□□□ 0.04
SCAF11-208ENST00000546534 KLRC3Q07444 240 aa15.3■□□□□ 0.04
SCAF11-208ENST00000546534 CHD9Q3L8U1 2897 aa15.3■□□□□ 0.04
SCAF11-208ENST00000546534 HSP90AB4PQ58FF6 505 aa15.3■□□□□ 0.04
SCAF11-208ENST00000546534 CXCL17Q6UXB2 119 aa15.3■□□□□ 0.04
SCAF11-208ENST00000546534 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.3■□□□□ 0.04
SCAF11-208ENST00000546534 ANKRD35Q8N283 1001 aa15.3■□□□□ 0.04
SCAF11-208ENST00000546534 CLASRPQ8N2M8 674 aaKnown RBP15.3■□□□□ 0.04
SCAF11-208ENST00000546534 SLC43A3Q8NBI5 491 aa15.3■□□□□ 0.04
SCAF11-208ENST00000546534 DDRGK1Q96HY6 314 aa15.3■□□□□ 0.04
SCAF11-208ENST00000546534 KATNBL1Q9H079 304 aa15.3■□□□□ 0.04
SCAF11-208ENST00000546534 PAG1Q9NWQ8 432 aa15.3■□□□□ 0.04
SCAF11-208ENST00000546534 BAZ2AQ9UIF9 1905 aaKnown RBP15.3■□□□□ 0.04
SCAF11-208ENST00000546534 ASTN1O14525 1302 aa15.29■□□□□ 0.04
SCAF11-208ENST00000546534 ZBED9Q6R2W3 1325 aa15.29■□□□□ 0.04
SCAF11-208ENST00000546534 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.29■□□□□ 0.04
SCAF11-208ENST00000546534 IFIT2P09913 472 aaKnown RBP15.29■□□□□ 0.04
SCAF11-208ENST00000546534 MYOGP15173 224 aa15.29■□□□□ 0.04
SCAF11-208ENST00000546534 KCNQ1P51787 676 aa15.29■□□□□ 0.04
SCAF11-208ENST00000546534 PPP2R2DQ66LE6 453 aa15.29■□□□□ 0.04
SCAF11-208ENST00000546534 CCDC144CPQ8IYA2 1237 aa15.29■□□□□ 0.04
SCAF11-208ENST00000546534 NOC4LQ9BVI4 516 aaKnown RBP15.29■□□□□ 0.04
SCAF11-208ENST00000546534 BCL11AQ9H165 835 aa15.29■□□□□ 0.04
SCAF11-208ENST00000546534 NYAP2Q9P242 653 aa15.29■□□□□ 0.04
SCAF11-208ENST00000546534 CTDP1Q9Y5B0 961 aaPredicted RBP15.29■□□□□ 0.04
SCAF11-208ENST00000546534 SLC4A4Q9Y6R1 1079 aa15.29■□□□□ 0.04
SCAF11-208ENST00000546534 GRIN2DO15399 1336 aa15.28■□□□□ 0.04
SCAF11-208ENST00000546534 RASA1P20936 1047 aa15.28■□□□□ 0.04
SCAF11-208ENST00000546534 CNTN2Q02246 1040 aa15.28■□□□□ 0.04
SCAF11-208ENST00000546534 TNFAIP2Q03169 654 aa15.28■□□□□ 0.04
SCAF11-208ENST00000546534 NOL8Q76FK4 1167 aaKnown RBP15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms