RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	BCL11A	Q9H165	835 aa		9.25	□□□□□ -0.93
SNHG1-223	ENST00000545440	CPA4	Q9UI42	421 aa		9.25	□□□□□ -0.93
SNHG1-223	ENST00000545440	WASF2	Q9Y6W5	498 aa		9.25	□□□□□ -0.93
SNHG1-223	ENST00000545440		V9GY48	417 aa	Predicted RBP	9.25	□□□□□ -0.93
SNHG1-223	ENST00000545440	TTC41P	Q6P2S7	1318 aa		9.25	□□□□□ -0.93
SNHG1-223	ENST00000545440	TNRC18	O15417	2968 aa	Predicted RBP	9.24	□□□□□ -0.93
SNHG1-223	ENST00000545440	ZNF236	Q9UL36	1845 aa		9.24	□□□□□ -0.93
SNHG1-223	ENST00000545440	PLXNA1	Q9UIW2	1896 aa		9.24	□□□□□ -0.93
SNHG1-223	ENST00000545440	ESPN	B1AK53	854 aa		9.24	□□□□□ -0.93
SNHG1-223	ENST00000545440	C19orf81	C9J6K1	198 aa		9.24	□□□□□ -0.93
SNHG1-223	ENST00000545440	GDF11	O95390	407 aa		9.24	□□□□□ -0.93
SNHG1-223	ENST00000545440	HMGCS2	P54868	508 aa		9.24	□□□□□ -0.93
SNHG1-223	ENST00000545440	BACE1	P56817	501 aa		9.24	□□□□□ -0.93
SNHG1-223	ENST00000545440	PABPC4	Q13310	644 aa	Known RBP eCLIP	9.24	□□□□□ -0.93
SNHG1-223	ENST00000545440	SLC4A8	Q2Y0W8	1093 aa		9.24	□□□□□ -0.93
SNHG1-223	ENST00000545440	TREML2	Q5T2D2	321 aa		9.24	□□□□□ -0.93
SNHG1-223	ENST00000545440	ZNF697	Q5TEC3	545 aa		9.24	□□□□□ -0.93
SNHG1-223	ENST00000545440	ZNF598	Q86UK7	904 aa	Known RBP	9.24	□□□□□ -0.93
SNHG1-223	ENST00000545440	FAM200A	Q8TCP9	573 aa		9.24	□□□□□ -0.93
SNHG1-223	ENST00000545440	CDK15	Q96Q40	435 aa		9.24	□□□□□ -0.93
SNHG1-223	ENST00000545440	CRBN	Q96SW2	442 aa		9.24	□□□□□ -0.93
SNHG1-223	ENST00000545440	ARHGAP39	Q9C0H5	1083 aa		9.24	□□□□□ -0.93
SNHG1-223	ENST00000545440	DCP1A	Q9NPI6	582 aa	Predicted RBP	9.24	□□□□□ -0.93
SNHG1-223	ENST00000545440	PGPEP1	Q9NXJ5	209 aa		9.24	□□□□□ -0.93
SNHG1-223	ENST00000545440	MBD4	O95243	580 aa		9.23	□□□□□ -0.93
SNHG1-223	ENST00000545440	POLR3D	P05423	398 aa	Predicted RBP	9.23	□□□□□ -0.93
SNHG1-223	ENST00000545440	FSHR	P23945	695 aa		9.23	□□□□□ -0.93
SNHG1-223	ENST00000545440	CTGF	P29279	349 aa		9.23	□□□□□ -0.93
SNHG1-223	ENST00000545440	SHMT1	P34896	483 aa		9.23	□□□□□ -0.93
SNHG1-223	ENST00000545440	PSMC4	P43686	418 aa		9.23	□□□□□ -0.93
SNHG1-223	ENST00000545440	GCLC	P48506	637 aa	Predicted RBP	9.23	□□□□□ -0.93
SNHG1-223	ENST00000545440	FCGRT	P55899	365 aa		9.23	□□□□□ -0.93
SNHG1-223	ENST00000545440	JAG1	P78504	1218 aa		9.23	□□□□□ -0.93
SNHG1-223	ENST00000545440	GABPA	Q06546	454 aa		9.23	□□□□□ -0.93
SNHG1-223	ENST00000545440	HDAC1	Q13547	482 aa	Predicted RBP	9.23	□□□□□ -0.93
SNHG1-223	ENST00000545440	ELOA	Q14241	798 aa	Known RBP	9.23	□□□□□ -0.93
SNHG1-223	ENST00000545440	FAM110C	Q1W6H9	321 aa		9.23	□□□□□ -0.93
SNHG1-223	ENST00000545440	SLC9C1	Q4G0N8	1177 aa		9.23	□□□□□ -0.93
SNHG1-223	ENST00000545440	KBTBD3	Q8NAB2	608 aa		9.23	□□□□□ -0.93
SNHG1-223	ENST00000545440	SDR42E1	Q8WUS8	393 aa		9.23	□□□□□ -0.93
SNHG1-223	ENST00000545440	ZNF333	Q96JL9	665 aa		9.23	□□□□□ -0.93
SNHG1-223	ENST00000545440	TRIM47	Q96LD4	638 aa		9.23	□□□□□ -0.93
SNHG1-223	ENST00000545440	PRKD2	Q9BZL6	878 aa		9.23	□□□□□ -0.93
SNHG1-223	ENST00000545440	ARMT1	Q9H993	441 aa		9.23	□□□□□ -0.93
SNHG1-223	ENST00000545440	ATP8A2	Q9NTI2	1148 aa		9.23	□□□□□ -0.93
SNHG1-223	ENST00000545440	DNAAF2	Q9NVR5	837 aa	Known RBP	9.23	□□□□□ -0.93
SNHG1-223	ENST00000545440	MCM9	Q9NXL9	1143 aa		9.23	□□□□□ -0.93
SNHG1-223	ENST00000545440	TMOD4	Q9NZQ9	345 aa		9.23	□□□□□ -0.93
SNHG1-223	ENST00000545440	SRRD	Q9UH36	339 aa		9.23	□□□□□ -0.93
SNHG1-223	ENST00000545440	PTCH2	Q9Y6C5	1203 aa		9.23	□□□□□ -0.93
SNHG1-223	ENST00000545440	USP17L10	C9JJH3	530 aa		9.22	□□□□□ -0.93
SNHG1-223	ENST00000545440	ERC2	O15083	957 aa		9.22	□□□□□ -0.93
SNHG1-223	ENST00000545440	ADH1C	P00326	375 aa		9.22	□□□□□ -0.93
SNHG1-223	ENST00000545440	GH2	P01242	217 aa		9.22	□□□□□ -0.93
SNHG1-223	ENST00000545440	ZFY	P08048	801 aa	Predicted RBP	9.22	□□□□□ -0.93
SNHG1-223	ENST00000545440	HOXD10	P28358	340 aa		9.22	□□□□□ -0.93
SNHG1-223	ENST00000545440	HOXA7	P31268	230 aa	Predicted RBP	9.22	□□□□□ -0.93
SNHG1-223	ENST00000545440	PLCD1	P51178	756 aa		9.22	□□□□□ -0.93
SNHG1-223	ENST00000545440	FOXC1	Q12948	553 aa		9.22	□□□□□ -0.93
SNHG1-223	ENST00000545440	ABCB5	Q2M3G0	1257 aa		9.22	□□□□□ -0.93
SNHG1-223	ENST00000545440	SHROOM1	Q2M3G4	852 aa	Predicted RBP	9.22	□□□□□ -0.93
SNHG1-223	ENST00000545440	CERKL	Q49MI3	558 aa	Predicted RBP	9.22	□□□□□ -0.93
SNHG1-223	ENST00000545440	NBPF11	Q86T75	865 aa		9.22	□□□□□ -0.93
SNHG1-223	ENST00000545440	AMOTL1	Q8IY63	956 aa		9.22	□□□□□ -0.93
SNHG1-223	ENST00000545440	GCC1	Q96CN9	775 aa		9.22	□□□□□ -0.93
SNHG1-223	ENST00000545440	C12orf42	Q96LP6	360 aa		9.22	□□□□□ -0.93
SNHG1-223	ENST00000545440	SWAP70	Q9UH65	585 aa		9.22	□□□□□ -0.93
SNHG1-223	ENST00000545440	NOVA2	Q9UNW9	492 aa	Known RBP	9.22	□□□□□ -0.93
SNHG1-223	ENST00000545440	MYPN	Q86TC9	1320 aa		9.22	□□□□□ -0.93
SNHG1-223	ENST00000545440	SALL3	Q9BXA9	1300 aa		9.22	□□□□□ -0.93
SNHG1-223	ENST00000545440	ROBO3	Q96MS0	1386 aa		9.22	□□□□□ -0.93
SNHG1-223	ENST00000545440	ALPK3	Q96L96	1907 aa		9.21	□□□□□ -0.93
SNHG1-223	ENST00000545440	TTC24	A2A3L6	582 aa	Predicted RBP	9.21	□□□□□ -0.94
SNHG1-223	ENST00000545440	USP17L15	C9J2P7	530 aa		9.21	□□□□□ -0.94
SNHG1-223	ENST00000545440	USP17L13	C9JLJ4	530 aa		9.21	□□□□□ -0.94
SNHG1-223	ENST00000545440	USP17L12	C9JPN9	530 aa		9.21	□□□□□ -0.94
SNHG1-223	ENST00000545440	USP17L11	C9JVI0	530 aa		9.21	□□□□□ -0.94
SNHG1-223	ENST00000545440	USP17L21	D6R901	530 aa		9.21	□□□□□ -0.94
SNHG1-223	ENST00000545440	USP17L18	D6R9N7	530 aa		9.21	□□□□□ -0.94
SNHG1-223	ENST00000545440	USP17L22	D6RA61	530 aa		9.21	□□□□□ -0.94
SNHG1-223	ENST00000545440	USP17L17	D6RBQ6	530 aa		9.21	□□□□□ -0.94
SNHG1-223	ENST00000545440	USP17L19	D6RCP7	530 aa		9.21	□□□□□ -0.94
SNHG1-223	ENST00000545440	USP17L20	D6RJB6	530 aa		9.21	□□□□□ -0.94
SNHG1-223	ENST00000545440	GLRX3	O76003	335 aa	Known RBP	9.21	□□□□□ -0.94
SNHG1-223	ENST00000545440	MX1	P20591	662 aa		9.21	□□□□□ -0.94
SNHG1-223	ENST00000545440	IRX3	P78415	501 aa	Predicted RBP	9.21	□□□□□ -0.94
SNHG1-223	ENST00000545440	USP17L24	Q0WX57	530 aa		9.21	□□□□□ -0.94
SNHG1-223	ENST00000545440	LRRFIP1	Q32MZ4	808 aa	Known RBP	9.21	□□□□□ -0.94
SNHG1-223	ENST00000545440	INTS6L	Q5JSJ4	861 aa	Known RBP	9.21	□□□□□ -0.94
SNHG1-223	ENST00000545440	TSHZ3	Q63HK5	1081 aa		9.21	□□□□□ -0.94
SNHG1-223	ENST00000545440	TRAF7	Q6Q0C0	670 aa		9.21	□□□□□ -0.94
SNHG1-223	ENST00000545440	CCDC116	Q8IYX3	515 aa		9.21	□□□□□ -0.94
SNHG1-223	ENST00000545440	ANKRD13C	Q8N6S4	541 aa		9.21	□□□□□ -0.94
SNHG1-223	ENST00000545440	PI4K2B	Q8TCG2	481 aa		9.21	□□□□□ -0.94
SNHG1-223	ENST00000545440	APPBP2	Q92624	585 aa		9.21	□□□□□ -0.94
SNHG1-223	ENST00000545440	MRGPRX2	Q96LB1	330 aa		9.21	□□□□□ -0.94
SNHG1-223	ENST00000545440	FEZ1	Q99689	392 aa		9.21	□□□□□ -0.94
SNHG1-223	ENST00000545440	KIAA1683	Q9H0B3	1180 aa		9.21	□□□□□ -0.94
SNHG1-223	ENST00000545440	ASCC2	Q9H1I8	757 aa	Predicted RBP	9.21	□□□□□ -0.94
SNHG1-223	ENST00000545440	CABP5	Q9NP86	173 aa		9.21	□□□□□ -0.94

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