RNA–Protein interactions for RNA: ENST00000544996.1

CCDC78-216, Transcript of coiled-coil domain containing 78, humanhuman

TSL 4

Gene CCDC78, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-216ENST00000544996 ZNF792Q3KQV3 632 aa18.42■□□□□ 0.54
CCDC78-216ENST00000544996 ANKLE1Q8NAG6 615 aa18.42■□□□□ 0.54
CCDC78-216ENST00000544996 AGBL1Q96MI9 1066 aa18.42■□□□□ 0.54
CCDC78-216ENST00000544996 LSG1Q9H089 658 aaKnown RBP18.42■□□□□ 0.54
CCDC78-216ENST00000544996 ACAD9Q9H845 621 aa18.42■□□□□ 0.54
CCDC78-216ENST00000544996 PPP4R2Q9NY27 417 aa18.42■□□□□ 0.54
CCDC78-216ENST00000544996 PNMA2Q9UL42 364 aa18.42■□□□□ 0.54
CCDC78-216ENST00000544996 ZNF536O15090 1300 aa18.42■□□□□ 0.54
CCDC78-216ENST00000544996 ZNF236Q9UL36 1845 aa18.42■□□□□ 0.54
CCDC78-216ENST00000544996 MSCO60682 206 aa18.41■□□□□ 0.54
CCDC78-216ENST00000544996 IGHA2P01877 340 aa18.41■□□□□ 0.54
CCDC78-216ENST00000544996 ICAM1P05362 532 aa18.41■□□□□ 0.54
CCDC78-216ENST00000544996 ALAS1P13196 640 aa18.41■□□□□ 0.54
CCDC78-216ENST00000544996 SNAP25P60880 206 aa18.41■□□□□ 0.54
CCDC78-216ENST00000544996 CYB5R4Q7L1T6 521 aa18.41■□□□□ 0.54
CCDC78-216ENST00000544996 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.41■□□□□ 0.54
CCDC78-216ENST00000544996 TRERF1Q96PN7 1200 aa18.41■□□□□ 0.54
CCDC78-216ENST00000544996 RANBP17Q9H2T7 1088 aaKnown RBP18.41■□□□□ 0.54
CCDC78-216ENST00000544996 RNF146Q9NTX7 359 aa18.41■□□□□ 0.54
CCDC78-216ENST00000544996 CCPG1Q9ULG6 757 aa18.41■□□□□ 0.54
CCDC78-216ENST00000544996 COL11A1P12107 1806 aaPredicted RBP18.41■□□□□ 0.54
CCDC78-216ENST00000544996 BRCA2P51587 3418 aa18.4■□□□□ 0.54
CCDC78-216ENST00000544996 IFIT3O14879 490 aaKnown RBP18.4■□□□□ 0.54
CCDC78-216ENST00000544996 ASPRV1Q53RT3 343 aa18.4■□□□□ 0.54
CCDC78-216ENST00000544996 TINF2Q9BSI4 451 aa18.4■□□□□ 0.54
CCDC78-216ENST00000544996 HTATIP2Q9BUP3 242 aa18.4■□□□□ 0.54
CCDC78-216ENST00000544996 NRBP1Q9UHY1 535 aa18.4■□□□□ 0.54
CCDC78-216ENST00000544996 OGDHLQ9ULD0 1010 aa18.4■□□□□ 0.54
CCDC78-216ENST00000544996 DNAJC25-GNG10A0A024R161 153 aa18.39■□□□□ 0.53
CCDC78-216ENST00000544996 PARP1P09874 1014 aaKnown RBP18.39■□□□□ 0.53
CCDC78-216ENST00000544996 GOLGA8HP0CJ92 632 aa18.39■□□□□ 0.53
CCDC78-216ENST00000544996 CYBAP13498 195 aa18.39■□□□□ 0.53
CCDC78-216ENST00000544996 RNF20Q5VTR2 975 aa18.39■□□□□ 0.53
CCDC78-216ENST00000544996 UBE2Q1Q7Z7E8 422 aa18.39■□□□□ 0.53
CCDC78-216ENST00000544996 MSL3Q8N5Y2 521 aaKnown RBP18.39■□□□□ 0.53
CCDC78-216ENST00000544996 DDX20Q9UHI6 824 aaKnown RBP18.39■□□□□ 0.53
CCDC78-216ENST00000544996 TAF6LQ9Y6J9 622 aa18.39■□□□□ 0.53
CCDC78-216ENST00000544996 SLC27A2O14975 620 aa18.38■□□□□ 0.53
CCDC78-216ENST00000544996 SEC23AQ15436 765 aa18.38■□□□□ 0.53
CCDC78-216ENST00000544996 LHX8Q68G74 356 aa18.38■□□□□ 0.53
CCDC78-216ENST00000544996 STOX1Q6ZVD7 989 aa18.38■□□□□ 0.53
CCDC78-216ENST00000544996 NECAB2Q7Z6G3 386 aa18.38■□□□□ 0.53
CCDC78-216ENST00000544996 ZNF467Q7Z7K2 595 aaPredicted RBP18.38■□□□□ 0.53
CCDC78-216ENST00000544996 CNPY2Q9Y2B0 182 aa18.38■□□□□ 0.53
CCDC78-216ENST00000544996 PFASO15067 1338 aa18.38■□□□□ 0.53
CCDC78-216ENST00000544996 POTEB2H3BUK9 544 aa18.37■□□□□ 0.53
CCDC78-216ENST00000544996 SEPT4O43236 478 aa18.37■□□□□ 0.53
CCDC78-216ENST00000544996 WTAPQ15007 396 aa18.37■□□□□ 0.53
CCDC78-216ENST00000544996 NECTIN1Q15223 517 aa18.37■□□□□ 0.53
CCDC78-216ENST00000544996 TMEM67Q5HYA8 995 aa18.37■□□□□ 0.53
CCDC78-216ENST00000544996 PRAMEF19Q5SWL8 479 aa18.37■□□□□ 0.53
CCDC78-216ENST00000544996 CREB3L3Q68CJ9 461 aa18.37■□□□□ 0.53
CCDC78-216ENST00000544996 TRPV1Q8NER1 839 aa18.37■□□□□ 0.53
CCDC78-216ENST00000544996 PAWRQ96IZ0 340 aaKnown RBP18.37■□□□□ 0.53
CCDC78-216ENST00000544996 UBA5Q9GZZ9 404 aa18.37■□□□□ 0.53
CCDC78-216ENST00000544996 DHX16O60231 1041 aaKnown RBP18.36■□□□□ 0.53
CCDC78-216ENST00000544996 MCM5P33992 734 aa18.36■□□□□ 0.53
CCDC78-216ENST00000544996 PRPF38BQ5VTL8 546 aaKnown RBP18.36■□□□□ 0.53
CCDC78-216ENST00000544996 MAMDC4Q6UXC1 1216 aa18.36■□□□□ 0.53
CCDC78-216ENST00000544996 CHST3Q7LGC8 479 aa18.36■□□□□ 0.53
CCDC78-216ENST00000544996 MB21D2Q8IYB1 491 aaPredicted RBP18.36■□□□□ 0.53
CCDC78-216ENST00000544996 DPF3Q92784 378 aa18.36■□□□□ 0.53
CCDC78-216ENST00000544996 SYNGAP1Q96PV0 1343 aa18.36■□□□□ 0.53
CCDC78-216ENST00000544996 A1CFQ9NQ94 594 aaKnown RBP18.36■□□□□ 0.53
CCDC78-216ENST00000544996 WDR19Q8NEZ3 1342 aa18.35■□□□□ 0.53
CCDC78-216ENST00000544996 MUM1L1Q5H9M0 696 aa18.35■□□□□ 0.53
CCDC78-216ENST00000544996 NSMFQ6X4W1 530 aa18.35■□□□□ 0.53
CCDC78-216ENST00000544996 CATIPQ7Z7H3 387 aa18.35■□□□□ 0.53
CCDC78-216ENST00000544996 MTA3Q9BTC8 594 aa18.35■□□□□ 0.53
CCDC78-216ENST00000544996 CPVLQ9H3G5 476 aa18.35■□□□□ 0.53
CCDC78-216ENST00000544996 ADGRF4Q8IZF3 695 aa18.34■□□□□ 0.53
CCDC78-216ENST00000544996 FAM133AQ8N9E0 248 aa18.34■□□□□ 0.53
CCDC78-216ENST00000544996 ARRDC4Q8NCT1 418 aa18.34■□□□□ 0.53
CCDC78-216ENST00000544996 IGDCC4Q8TDY8 1250 aa18.34■□□□□ 0.53
CCDC78-216ENST00000544996 DIS3LQ8TF46 1054 aaKnown RBP18.34■□□□□ 0.53
CCDC78-216ENST00000544996 C11orf49Q9H6J7 331 aa18.34■□□□□ 0.53
CCDC78-216ENST00000544996 CYP39A1Q9NYL5 469 aa18.34■□□□□ 0.53
CCDC78-216ENST00000544996 KLRF2D3W0D1 207 aa18.33■□□□□ 0.52
CCDC78-216ENST00000544996 PRC1O43663 620 aa18.33■□□□□ 0.52
CCDC78-216ENST00000544996 SNAI1O95863 264 aaPredicted RBP18.33■□□□□ 0.52
CCDC78-216ENST00000544996 ANTXR2P58335 489 aa18.33■□□□□ 0.52
CCDC78-216ENST00000544996 CNTN2Q02246 1040 aa18.33■□□□□ 0.52
CCDC78-216ENST00000544996 CDC37Q16543 378 aaPredicted RBP18.33■□□□□ 0.52
CCDC78-216ENST00000544996 TMTC2Q8N394 836 aa18.33■□□□□ 0.52
CCDC78-216ENST00000544996 TMEM87BQ96K49 555 aa18.33■□□□□ 0.52
CCDC78-216ENST00000544996 VAT1LQ9HCJ6 419 aa18.33■□□□□ 0.52
CCDC78-216ENST00000544996 TNRC18O15417 2968 aaPredicted RBP18.32■□□□□ 0.52
CCDC78-216ENST00000544996 PTPDC1A2A3K4 754 aa18.32■□□□□ 0.52
CCDC78-216ENST00000544996 ASB14A6NK59 587 aa18.32■□□□□ 0.52
CCDC78-216ENST00000544996 ZNF865P0CJ78 1059 aaPredicted RBP18.32■□□□□ 0.52
CCDC78-216ENST00000544996 RARBP10826 455 aa18.32■□□□□ 0.52
CCDC78-216ENST00000544996 AKR1A1P14550 325 aa18.32■□□□□ 0.52
CCDC78-216ENST00000544996 TAL1P17542 331 aaPredicted RBP18.32■□□□□ 0.52
CCDC78-216ENST00000544996 MNX1P50219 401 aaPredicted RBP18.32■□□□□ 0.52
CCDC78-216ENST00000544996 BAATQ14032 418 aaPredicted RBP18.32■□□□□ 0.52
CCDC78-216ENST00000544996 USH1GQ495M9 461 aa18.32■□□□□ 0.52
CCDC78-216ENST00000544996 ANO1Q5XXA6 986 aa18.32■□□□□ 0.52
CCDC78-216ENST00000544996 NFXL1Q6ZNB6 911 aa18.32■□□□□ 0.52
CCDC78-216ENST00000544996 ARMCX2Q7L311 632 aa18.32■□□□□ 0.52
CCDC78-216ENST00000544996 CCDC144CPQ8IYA2 1237 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms