RNA–Protein interactions for RNA: ENST00000543324.1

CIT-213, Transcript of citron rho-interacting serine/threonine kinase, human

TSL 3

Gene CIT, Length 497 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CIT-213	ENST00000543324	DDX4	Q9NQI0	724 aa	Known RBP	7.84	□□□□□ -1.15
CIT-213	ENST00000543324	STARD7	Q9NQZ5	370 aa		7.84	□□□□□ -1.15
CIT-213	ENST00000543324	TMOD2	Q9NZR1	351 aa		7.84	□□□□□ -1.15
CIT-213	ENST00000543324	HMG20B	Q9P0W2	317 aa		7.84	□□□□□ -1.15
CIT-213	ENST00000543324	COL11A1	P12107	1806 aa	Predicted RBP	7.84	□□□□□ -1.15
CIT-213	ENST00000543324	CNOT1	A5YKK6	2376 aa	Known RBP	7.83	□□□□□ -1.16
CIT-213	ENST00000543324	CDK7	P50613	346 aa		7.83	□□□□□ -1.16
CIT-213	ENST00000543324	ERVK-9	P63128	1117 aa		7.83	□□□□□ -1.16
CIT-213	ENST00000543324	ERVK-24	P63145	666 aa		7.83	□□□□□ -1.16
CIT-213	ENST00000543324	ATP8B2	P98198	1209 aa		7.83	□□□□□ -1.16
CIT-213	ENST00000543324	MECOM	Q03112	1051 aa		7.83	□□□□□ -1.16
CIT-213	ENST00000543324		Q3C1V9	767 aa		7.83	□□□□□ -1.16
CIT-213	ENST00000543324	RNF180	Q86T96	592 aa		7.83	□□□□□ -1.16
CIT-213	ENST00000543324	SPATA5	Q8NB90	893 aa		7.83	□□□□□ -1.16
CIT-213	ENST00000543324	FRAT1	Q92837	279 aa	Predicted RBP	7.83	□□□□□ -1.16
CIT-213	ENST00000543324	NSUN4	Q96CB9	384 aa	Known RBP	7.83	□□□□□ -1.16
CIT-213	ENST00000543324	SLC9A7	Q96T83	725 aa		7.83	□□□□□ -1.16
CIT-213	ENST00000543324	SMCHD1	A6NHR9	2005 aa		7.83	□□□□□ -1.16
CIT-213	ENST00000543324	UMODL1	Q5DID0	1318 aa		7.82	□□□□□ -1.16
CIT-213	ENST00000543324	PTPRS	Q13332	1948 aa		7.82	□□□□□ -1.16
CIT-213	ENST00000543324	GREB1L	Q9C091	1923 aa	Predicted RBP	7.82	□□□□□ -1.16
CIT-213	ENST00000543324	BAZ2A	Q9UIF9	1905 aa	Known RBP	7.82	□□□□□ -1.16
CIT-213	ENST00000543324	DDTL	A6NHG4	134 aa	Predicted RBP	7.82	□□□□□ -1.16
CIT-213	ENST00000543324	LOC730098	B7Z3J9	87 aa		7.82	□□□□□ -1.16
CIT-213	ENST00000543324	IGSF3	O75054	1194 aa		7.82	□□□□□ -1.16
CIT-213	ENST00000543324	MAP4K4	O95819	1239 aa	Predicted RBP	7.82	□□□□□ -1.16
CIT-213	ENST00000543324	LTBR	P36941	435 aa		7.82	□□□□□ -1.16
CIT-213	ENST00000543324	RGS3	P49796	1198 aa		7.82	□□□□□ -1.16
CIT-213	ENST00000543324	SHC2	P98077	582 aa		7.82	□□□□□ -1.16
CIT-213	ENST00000543324	CBX2	Q14781	532 aa	Predicted RBP	7.82	□□□□□ -1.16
CIT-213	ENST00000543324	SOWAHC	Q53LP3	525 aa	Predicted RBP	7.82	□□□□□ -1.16
CIT-213	ENST00000543324	TNNI3K	Q59H18	835 aa		7.82	□□□□□ -1.16
CIT-213	ENST00000543324	CEP85	Q6P2H3	762 aa		7.82	□□□□□ -1.16
CIT-213	ENST00000543324	CCDC84	Q86UT8	332 aa	Predicted RBP	7.82	□□□□□ -1.16
CIT-213	ENST00000543324	CCAR1	Q8IX12	1150 aa	Known RBP	7.82	□□□□□ -1.16
CIT-213	ENST00000543324	FAM126B	Q8IXS8	530 aa		7.82	□□□□□ -1.16
CIT-213	ENST00000543324	CYP2W1	Q8TAV3	490 aa		7.82	□□□□□ -1.16
CIT-213	ENST00000543324	PHOSPHO2	Q8TCD6	241 aa		7.82	□□□□□ -1.16
CIT-213	ENST00000543324	HAUS7	Q99871	368 aa		7.82	□□□□□ -1.16
CIT-213	ENST00000543324	XPNPEP3	Q9NQH7	507 aa		7.82	□□□□□ -1.16
CIT-213	ENST00000543324	USP40	Q9NVE5	1235 aa		7.82	□□□□□ -1.16
CIT-213	ENST00000543324	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	7.82	□□□□□ -1.16
CIT-213	ENST00000543324	RBPJL	Q9UBG7	517 aa		7.82	□□□□□ -1.16
CIT-213	ENST00000543324	FPGT-TNNI3K	V9GXZ4	949 aa		7.82	□□□□□ -1.16
CIT-213	ENST00000543324	ZNF236	Q9UL36	1845 aa		7.81	□□□□□ -1.16
CIT-213	ENST00000543324	SLC15A5	A6NIM6	579 aa		7.81	□□□□□ -1.16
CIT-213	ENST00000543324	TBC1D12	O60347	775 aa		7.81	□□□□□ -1.16
CIT-213	ENST00000543324	PGK1	P00558	417 aa		7.81	□□□□□ -1.16
CIT-213	ENST00000543324	PTPRE	P23469	700 aa		7.81	□□□□□ -1.16
CIT-213	ENST00000543324	BTD	P43251	543 aa		7.81	□□□□□ -1.16
CIT-213	ENST00000543324	ACLY	P53396	1101 aa		7.81	□□□□□ -1.16
CIT-213	ENST00000543324	HERVK_113	P62684	666 aa		7.81	□□□□□ -1.16
CIT-213	ENST00000543324	TCP10	Q12799	353 aa		7.81	□□□□□ -1.16
CIT-213	ENST00000543324	GRB14	Q14449	540 aa		7.81	□□□□□ -1.16
CIT-213	ENST00000543324	TTLL4	Q14679	1199 aa		7.81	□□□□□ -1.16
CIT-213	ENST00000543324	PPM1J	Q5JR12	505 aa		7.81	□□□□□ -1.16
CIT-213	ENST00000543324	OLFML2B	Q68BL8	750 aa		7.81	□□□□□ -1.16
CIT-213	ENST00000543324	SPTY2D1	Q68D10	685 aa	Predicted RBP	7.81	□□□□□ -1.16
CIT-213	ENST00000543324	METTL16	Q86W50	562 aa	Known RBP	7.81	□□□□□ -1.16
CIT-213	ENST00000543324	DZIP1	Q86YF9	867 aa	Known RBP	7.81	□□□□□ -1.16
CIT-213	ENST00000543324	HERC6	Q8IVU3	1022 aa		7.81	□□□□□ -1.16
CIT-213	ENST00000543324	SLF2	Q8IX21	1173 aa		7.81	□□□□□ -1.16
CIT-213	ENST00000543324	RPUSD2	Q8IZ73	545 aa	Known RBP	7.81	□□□□□ -1.16
CIT-213	ENST00000543324	NUP133	Q8WUM0	1156 aa		7.81	□□□□□ -1.16
CIT-213	ENST00000543324	DDRGK1	Q96HY6	314 aa		7.81	□□□□□ -1.16
CIT-213	ENST00000543324	TSEN34	Q9BSV6	310 aa	Known RBP	7.81	□□□□□ -1.16
CIT-213	ENST00000543324	DBNL	Q9UJU6	430 aa	Known RBP	7.81	□□□□□ -1.16
CIT-213	ENST00000543324	CDV3	Q9UKY7	258 aa	Known RBP	7.81	□□□□□ -1.16
CIT-213	ENST00000543324	LAMA5	O15230	3695 aa		7.8	□□□□□ -1.16
CIT-213	ENST00000543324	LCHN	A4D1U4	455 aa		7.8	□□□□□ -1.16
CIT-213	ENST00000543324	KIF28P	B7ZC32	967 aa		7.8	□□□□□ -1.16
CIT-213	ENST00000543324	GLRX3	O76003	335 aa	Known RBP	7.8	□□□□□ -1.16
CIT-213	ENST00000543324	CYP2E1	P05181	493 aa	Predicted RBP	7.8	□□□□□ -1.16
CIT-213	ENST00000543324	UQCRFS1P1	P0C7P4	283 aa		7.8	□□□□□ -1.16
CIT-213	ENST00000543324	SLURP2	P0DP57	97 aa		7.8	□□□□□ -1.16
CIT-213	ENST00000543324	PML	P29590	882 aa		7.8	□□□□□ -1.16
CIT-213	ENST00000543324	HMGCS2	P54868	508 aa		7.8	□□□□□ -1.16
CIT-213	ENST00000543324	PPP4C	P60510	307 aa		7.8	□□□□□ -1.16
CIT-213	ENST00000543324	IRX3	P78415	501 aa	Predicted RBP	7.8	□□□□□ -1.16
CIT-213	ENST00000543324	SMAD4	Q13485	552 aa	Known RBP	7.8	□□□□□ -1.16
CIT-213	ENST00000543324	TBC1D9	Q6ZT07	1266 aa		7.8	□□□□□ -1.16
CIT-213	ENST00000543324	EP400NL	Q6ZTU2	488 aa		7.8	□□□□□ -1.16
CIT-213	ENST00000543324	ADGRA1	Q86SQ6	560 aa		7.8	□□□□□ -1.16
CIT-213	ENST00000543324	PIP4P2	Q8N4L2	257 aa		7.8	□□□□□ -1.16
CIT-213	ENST00000543324	KDF1	Q8NAX2	398 aa	Predicted RBP	7.8	□□□□□ -1.16
CIT-213	ENST00000543324	DBNDD2	Q9BQY9	259 aa		7.8	□□□□□ -1.16
CIT-213	ENST00000543324	WNT8A	Q9H1J5	351 aa		7.8	□□□□□ -1.16
CIT-213	ENST00000543324	C1orf115	Q9H7X2	142 aa		7.8	□□□□□ -1.16
CIT-213	ENST00000543324	TLR7	Q9NYK1	1049 aa	Known RBP	7.8	□□□□□ -1.16
CIT-213	ENST00000543324	ANKFY1	Q9P2R3	1169 aa		7.8	□□□□□ -1.16
CIT-213	ENST00000543324	ABCF2	Q9UG63	623 aa		7.8	□□□□□ -1.16
CIT-213	ENST00000543324	FANCM	Q8IYD8	2048 aa		7.79	□□□□□ -1.16
CIT-213	ENST00000543324	DOPEY1	Q5JWR5	2465 aa		7.79	□□□□□ -1.16
CIT-213	ENST00000543324	MOXD2P	A6NHM9	499 aa		7.79	□□□□□ -1.16
CIT-213	ENST00000543324	PRR5-ARHGAP8	B1AHC4	643 aa		7.79	□□□□□ -1.16
CIT-213	ENST00000543324	CTNND1	O60716	968 aa	Known RBP	7.79	□□□□□ -1.16
CIT-213	ENST00000543324	ADAMTS4	O75173	837 aa		7.79	□□□□□ -1.16
CIT-213	ENST00000543324	CD4	P01730	458 aa		7.79	□□□□□ -1.16
CIT-213	ENST00000543324	RARB	P10826	455 aa		7.79	□□□□□ -1.16
CIT-213	ENST00000543324	CCL23	P55773	120 aa		7.79	□□□□□ -1.16

Retrieved 100 of 20,778 RNA–protein pairs in 14 ms