RNA–Protein interactions for RNA: ENST00000542717.1

CHD4-209, Transcript of chromodomain helicase DNA binding protein 4, human

TSL 3

Gene CHD4, Length 204 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD4-209	ENST00000542717	RRP1B	Q14684	758 aa	Known RBP	4.11	□□□□□ -1.75
CHD4-209	ENST00000542717	COL19A1	Q14993	1142 aa		4.11	□□□□□ -1.75
CHD4-209	ENST00000542717	CTC1	Q2NKJ3	1217 aa		4.11	□□□□□ -1.75
CHD4-209	ENST00000542717	FAM47C	Q5HY64	1035 aa		4.11	□□□□□ -1.75
CHD4-209	ENST00000542717	VARS2	Q5ST30	1063 aa	Known RBP	4.11	□□□□□ -1.75
CHD4-209	ENST00000542717	UNQ6494/PRO21346	Q6UXR6	183 aa		4.11	□□□□□ -1.75
CHD4-209	ENST00000542717	CATSPERG	Q6ZRH7	1159 aa		4.11	□□□□□ -1.75
CHD4-209	ENST00000542717	ABRA	Q8N0Z2	381 aa		4.11	□□□□□ -1.75
CHD4-209	ENST00000542717	CRIPAK	Q8N1N5	446 aa		4.11	□□□□□ -1.75
CHD4-209	ENST00000542717	PPP2R3C	Q969Q6	453 aa		4.11	□□□□□ -1.75
CHD4-209	ENST00000542717	SAMD11	Q96NU1	681 aa		4.11	□□□□□ -1.75
CHD4-209	ENST00000542717	MMP19	Q99542	508 aa		4.11	□□□□□ -1.75
CHD4-209	ENST00000542717	SEZ6L	Q9BYH1	1024 aa		4.11	□□□□□ -1.75
CHD4-209	ENST00000542717	TSHZ2	Q9NRE2	1034 aa		4.11	□□□□□ -1.75
CHD4-209	ENST00000542717	TRMT13	Q9NUP7	481 aa	Known RBP	4.11	□□□□□ -1.75
CHD4-209	ENST00000542717	HERC5	Q9UII4	1024 aa	Known RBP	4.11	□□□□□ -1.75
CHD4-209	ENST00000542717	USP15	Q9Y4E8	981 aa	Predicted RBP	4.11	□□□□□ -1.75
CHD4-209	ENST00000542717	INSL6	Q9Y581	213 aa		4.11	□□□□□ -1.75
CHD4-209	ENST00000542717	SI	P14410	1827 aa		4.11	□□□□□ -1.75
CHD4-209	ENST00000542717	ROBO3	Q96MS0	1386 aa		4.11	□□□□□ -1.75
CHD4-209	ENST00000542717	ASH1L	Q9NR48	2969 aa	Known RBP	4.11	□□□□□ -1.75
CHD4-209	ENST00000542717	ATAD5	Q96QE3	1844 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	RALGAPA2	Q2PPJ7	1873 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	PI4KAP2	A4QPH2	592 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	TAF4	O00268	1085 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	ELL2	O00472	640 aa	Predicted RBP	4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	PI15	O43692	258 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	BRD1	O95696	1058 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	IQCF3	P0C7M6	154 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	VCAM1	P19320	739 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	AOC1	P19801	751 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	GTF2F1	P35269	517 aa	Known RBP eCLIP	4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	BTD	P43251	543 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	GJA9	P57773	515 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	PSMC6	P62333	389 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	LMOD3	Q0VAK6	560 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	BFSP2	Q13515	415 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	CCDC144B	Q3MJ40	725 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	METTL24	Q5JXM2	366 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	LMBR1L	Q6UX01	489 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	KSR2	Q6VAB6	950 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	LBX2	Q6XYB7	198 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	DZIP1	Q86YF9	867 aa	Known RBP	4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	SLF2	Q8IX21	1173 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	TMEM192	Q8IY95	271 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	PI4KAP1	Q8N8J0	262 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	SLC43A3	Q8NBI5	491 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	RTP3	Q9BQQ7	232 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	TANGO6	Q9C0B7	1094 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	PNN	Q9H307	717 aa	Known RBP	4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	MYH16	Q9H6N6	1097 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	RPAP3	Q9H6T3	665 aa	Predicted RBP	4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	HOXC10	Q9NYD6	342 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	ZBTB21	Q9ULJ3	1066 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	SORCS3	Q9UPU3	1222 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	NOD1	Q9Y239	953 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	SCN5A	Q14524	2016 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	OTOGL	Q3ZCN5	2332 aa		4.1	□□□□□ -1.75
CHD4-209	ENST00000542717	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	ABHD14A-ACY1	A0A1B0GW23	586 aa		4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	SRRM3	A6NNA2	597 aa	Predicted RBP	4.09	□□□□□ -1.75
CHD4-209	ENST00000542717		E9PSI1	815 aa		4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	MAP3K13	O43283	966 aa		4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	EYA4	O95677	639 aa		4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	IFIT1	P09914	478 aa	Known RBP	4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	PML	P29590	882 aa		4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	CTNNB1	P35222	781 aa		4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	ADAM15	Q13444	863 aa		4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	ACVR2B	Q13705	512 aa		4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	IKBKE	Q14164	716 aa		4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	COG2	Q14746	738 aa		4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	FSCN1	Q16658	493 aa	Known RBP	4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	SOWAHC	Q53LP3	525 aa	Predicted RBP	4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	N4BP2L1	Q5TBK1	243 aa	Predicted RBP	4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	FBXO11	Q86XK2	927 aa		4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	MYOCD	Q8IZQ8	938 aa		4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	ZGPAT	Q8N5A5	531 aa	Known RBP	4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	SMRP1	Q8NCR6	262 aa		4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	NETO1	Q8TDF5	533 aa		4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	DDX1	Q92499	740 aa	Known RBP	4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	MSLNL	Q96KJ4	702 aa		4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	C12orf42	Q96LP6	360 aa		4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	YME1L1	Q96TA2	773 aa		4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	PUS3	Q9BZE2	481 aa	Known RBP	4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	AP5M1	Q9H0R1	490 aa		4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	UPF3A	Q9H1J1	476 aa	Known RBP	4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	FBXL21	Q9UKT6	434 aa		4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	BARX2	Q9UMQ3	279 aa	Predicted RBP	4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	DIS3	Q9Y2L1	958 aa	Known RBP	4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	MROH5	Q6ZUA9	1318 aa		4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	SALL1	Q9NSC2	1324 aa		4.09	□□□□□ -1.75
CHD4-209	ENST00000542717	ZNF236	Q9UL36	1845 aa		4.09	□□□□□ -1.76
CHD4-209	ENST00000542717	CDK5RAP2	Q96SN8	1893 aa		4.09	□□□□□ -1.76
CHD4-209	ENST00000542717	CHL1	O00533	1208 aa		4.08	□□□□□ -1.76
CHD4-209	ENST00000542717	PITPNM1	O00562	1244 aa		4.08	□□□□□ -1.76
CHD4-209	ENST00000542717	SLC30A4	O14863	429 aa		4.08	□□□□□ -1.76
CHD4-209	ENST00000542717	GRIN2D	O15399	1336 aa		4.08	□□□□□ -1.76
CHD4-209	ENST00000542717	DYNC1LI2	O43237	492 aa	Predicted RBP	4.08	□□□□□ -1.76

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