RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 CNBD1Q8NA66 436 aa15.22■□□□□ 0.03
PTPN1-202ENST00000541713 GLIS3Q8NEA6 775 aa15.22■□□□□ 0.03
PTPN1-202ENST00000541713 JADE2Q9NQC1 790 aa15.22■□□□□ 0.03
PTPN1-202ENST00000541713 PCDHA6Q9UN73 950 aa15.22■□□□□ 0.03
PTPN1-202ENST00000541713 LUC7L2Q9Y383 392 aaKnown RBP15.22■□□□□ 0.03
PTPN1-202ENST00000541713 PCDHA8Q9Y5H6 950 aa15.22■□□□□ 0.03
PTPN1-202ENST00000541713 EFCAB8A8MWE9 144 aa15.22■□□□□ 0.03
PTPN1-202ENST00000541713 MAP3K9P80192 1104 aa15.22■□□□□ 0.03
PTPN1-202ENST00000541713 SMC1AQ14683 1233 aaKnown RBP15.22■□□□□ 0.03
PTPN1-202ENST00000541713 CABP7Q86V35 215 aa15.22■□□□□ 0.03
PTPN1-202ENST00000541713 KLHL34Q8N239 644 aa15.22■□□□□ 0.03
PTPN1-202ENST00000541713 CDK5RAP3Q96JB5 506 aa15.22■□□□□ 0.03
PTPN1-202ENST00000541713 PDE11AQ9HCR9 933 aa15.22■□□□□ 0.03
PTPN1-202ENST00000541713 ABHD10Q9NUJ1 306 aa15.22■□□□□ 0.03
PTPN1-202ENST00000541713 TCP11L1Q9NUJ3 509 aa15.22■□□□□ 0.03
PTPN1-202ENST00000541713 VPS18Q9P253 973 aa15.22■□□□□ 0.03
PTPN1-202ENST00000541713 SF3B3Q15393 1217 aaKnown RBP15.22■□□□□ 0.03
PTPN1-202ENST00000541713 CCDC96Q2M329 555 aa15.22■□□□□ 0.03
PTPN1-202ENST00000541713 PDXDC2PQ6P474 469 aa15.22■□□□□ 0.03
PTPN1-202ENST00000541713 SLC30A10Q6XR72 485 aa15.22■□□□□ 0.03
PTPN1-202ENST00000541713 TICAM2Q86XR7 235 aa15.22■□□□□ 0.03
PTPN1-202ENST00000541713 DNAAF5Q86Y56 855 aa15.22■□□□□ 0.03
PTPN1-202ENST00000541713 TBCKQ8TEA7 893 aa15.22■□□□□ 0.03
PTPN1-202ENST00000541713 SMARCC1Q92922 1105 aaPredicted RBP15.22■□□□□ 0.03
PTPN1-202ENST00000541713 CEP95Q96GE4 821 aa15.22■□□□□ 0.03
PTPN1-202ENST00000541713 AK7Q96M32 723 aa15.22■□□□□ 0.03
PTPN1-202ENST00000541713 PCDHA4Q9UN74 947 aa15.22■□□□□ 0.03
PTPN1-202ENST00000541713 DDAH1O94760 285 aa15.21■□□□□ 0.03
PTPN1-202ENST00000541713 RBM5P52756 815 aaKnown RBP eCLIP15.21■□□□□ 0.03
PTPN1-202ENST00000541713 APBA1Q02410 837 aa15.21■□□□□ 0.03
PTPN1-202ENST00000541713 SHROOM1Q2M3G4 852 aaPredicted RBP15.21■□□□□ 0.03
PTPN1-202ENST00000541713 CC2D1AQ6P1N0 951 aaPredicted RBP15.21■□□□□ 0.03
PTPN1-202ENST00000541713 POTEDQ86YR6 584 aa15.21■□□□□ 0.03
PTPN1-202ENST00000541713 NELFCDQ8IXH7 590 aa15.21■□□□□ 0.03
PTPN1-202ENST00000541713 KIFC2Q96AC6 838 aa15.21■□□□□ 0.03
PTPN1-202ENST00000541713 DISC1Q9NRI5 854 aa15.21■□□□□ 0.03
PTPN1-202ENST00000541713 SEC63Q9UGP8 760 aaKnown RBP15.21■□□□□ 0.03
PTPN1-202ENST00000541713 GTPBP6O43824 516 aaPredicted RBP15.21■□□□□ 0.03
PTPN1-202ENST00000541713 C12orf60Q5U649 245 aa15.21■□□□□ 0.03
PTPN1-202ENST00000541713 TRIML1Q8N9V2 468 aa15.21■□□□□ 0.03
PTPN1-202ENST00000541713 ATP8A2Q9NTI2 1148 aa15.21■□□□□ 0.03
PTPN1-202ENST00000541713 EXOC1Q9NV70 894 aa15.21■□□□□ 0.03
PTPN1-202ENST00000541713 ARPP21Q9UBL0 812 aaPredicted RBP15.21■□□□□ 0.03
PTPN1-202ENST00000541713 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.21■□□□□ 0.03
PTPN1-202ENST00000541713 BAG3O95817 575 aa15.2■□□□□ 0.02
PTPN1-202ENST00000541713 IKQ13123 557 aaPredicted RBP15.2■□□□□ 0.02
PTPN1-202ENST00000541713 KCTD1Q719H9 257 aa15.2■□□□□ 0.02
PTPN1-202ENST00000541713 CNGA4Q8IV77 575 aa15.2■□□□□ 0.02
PTPN1-202ENST00000541713 TNFRSF25Q93038 417 aa15.2■□□□□ 0.02
PTPN1-202ENST00000541713 NLRC4Q9NPP4 1024 aa15.2■□□□□ 0.02
PTPN1-202ENST00000541713 MAD2L2Q9UI95 211 aa15.2■□□□□ 0.02
PTPN1-202ENST00000541713 LAMB4A4D0S4 1761 aa15.2■□□□□ 0.02
PTPN1-202ENST00000541713 PCNTO95613 3336 aa15.2■□□□□ 0.02
PTPN1-202ENST00000541713 TDP2O95551 362 aa15.2■□□□□ 0.02
PTPN1-202ENST00000541713 E2F4Q16254 413 aa15.2■□□□□ 0.02
PTPN1-202ENST00000541713 LONRF2Q1L5Z9 754 aa15.2■□□□□ 0.02
PTPN1-202ENST00000541713 NT5DC1Q5TFE4 455 aa15.2■□□□□ 0.02
PTPN1-202ENST00000541713 TTBK2Q6IQ55 1244 aa15.2■□□□□ 0.02
PTPN1-202ENST00000541713 ANAPC4Q9UJX5 808 aa15.2■□□□□ 0.02
PTPN1-202ENST00000541713 EPN1Q9Y6I3 576 aaPredicted RBP15.2■□□□□ 0.02
PTPN1-202ENST00000541713 NUP98P52948 1817 aa15.2■□□□□ 0.02
PTPN1-202ENST00000541713 TBC1D8O95759 1140 aa15.2■□□□□ 0.02
PTPN1-202ENST00000541713 CDK8P49336 464 aa15.2■□□□□ 0.02
PTPN1-202ENST00000541713 GPSM2P81274 684 aa15.2■□□□□ 0.02
PTPN1-202ENST00000541713 NAALADL2Q58DX5 795 aa15.2■□□□□ 0.02
PTPN1-202ENST00000541713 TRAPPC3LQ5T215 181 aa15.2■□□□□ 0.02
PTPN1-202ENST00000541713 ZSCAN29Q8IWY8 852 aaPredicted RBP15.2■□□□□ 0.02
PTPN1-202ENST00000541713 CTAGE1Q96RT6 745 aa15.2■□□□□ 0.02
PTPN1-202ENST00000541713 ABCB6Q9NP58 842 aa15.2■□□□□ 0.02
PTPN1-202ENST00000541713 EHD2Q9NZN4 543 aa15.2■□□□□ 0.02
PTPN1-202ENST00000541713 PSMA7O14818 248 aa15.19■□□□□ 0.02
PTPN1-202ENST00000541713 NOC4LQ9BVI4 516 aaKnown RBP15.19■□□□□ 0.02
PTPN1-202ENST00000541713 PARP4Q9UKK3 1724 aaKnown RBP15.19■□□□□ 0.02
PTPN1-202ENST00000541713 ZNF658Q5TYW1 1059 aaPredicted RBP15.19■□□□□ 0.02
PTPN1-202ENST00000541713 CDKAL1Q5VV42 579 aa15.19■□□□□ 0.02
PTPN1-202ENST00000541713 ANKRD40Q6AI12 368 aa15.19■□□□□ 0.02
PTPN1-202ENST00000541713 TUBGCP2Q9BSJ2 902 aa15.19■□□□□ 0.02
PTPN1-202ENST00000541713 DEF6Q9H4E7 631 aa15.19■□□□□ 0.02
PTPN1-202ENST00000541713 MYH13Q9UKX3 1938 aa15.19■□□□□ 0.02
PTPN1-202ENST00000541713 PLEKHG2Q9H7P9 1386 aa15.19■□□□□ 0.02
PTPN1-202ENST00000541713 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.19■□□□□ 0.02
PTPN1-202ENST00000541713 CALML3P27482 149 aa15.19■□□□□ 0.02
PTPN1-202ENST00000541713 VSNL1P62760 191 aa15.19■□□□□ 0.02
PTPN1-202ENST00000541713 STIM1Q13586 685 aa15.19■□□□□ 0.02
PTPN1-202ENST00000541713 DPP8Q6V1X1 898 aaPredicted RBP15.19■□□□□ 0.02
PTPN1-202ENST00000541713 RIN2Q8WYP3 895 aaPredicted RBP15.19■□□□□ 0.02
PTPN1-202ENST00000541713 NUDT12Q9BQG2 462 aa15.19■□□□□ 0.02
PTPN1-202ENST00000541713 DNAJC21Q5F1R6 531 aaKnown RBP15.18■□□□□ 0.02
PTPN1-202ENST00000541713 TMC4Q7Z404 712 aa15.18■□□□□ 0.02
PTPN1-202ENST00000541713 SH3RF1Q7Z6J0 888 aa15.18■□□□□ 0.02
PTPN1-202ENST00000541713 IRF2BP1Q8IU81 584 aa15.18■□□□□ 0.02
PTPN1-202ENST00000541713 ANKRD2Q9GZV1 360 aa15.18■□□□□ 0.02
PTPN1-202ENST00000541713 LACRTQ9GZZ8 138 aa15.18■□□□□ 0.02
PTPN1-202ENST00000541713 CTAGE15A4D2H0 777 aa15.18■□□□□ 0.02
PTPN1-202ENST00000541713 IPO7O95373 1038 aaKnown RBP15.18■□□□□ 0.02
PTPN1-202ENST00000541713 CTAGE8P0CG41 777 aa15.18■□□□□ 0.02
PTPN1-202ENST00000541713 RASA1P20936 1047 aa15.18■□□□□ 0.02
PTPN1-202ENST00000541713 CTAGE6Q86UF2 777 aa15.18■□□□□ 0.02
PTPN1-202ENST00000541713 CTAGE4Q8IX94 777 aa15.18■□□□□ 0.02
PTPN1-202ENST00000541713 NOC3LQ8WTT2 800 aaKnown RBP15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms