RNA–Protein interactions for RNA: ENST00000540896.1

CLTCL1-206, Transcript of clathrin heavy chain like 1, humanhuman

TSL 4

Gene CLTCL1, Length 477 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-206ENST00000540896 NUP133Q8WUM0 1156 aa7.75□□□□□ -1.17
CLTCL1-206ENST00000540896 AGXT2Q9BYV1 514 aa7.75□□□□□ -1.17
CLTCL1-206ENST00000540896 TCP11L1Q9NUJ3 509 aa7.75□□□□□ -1.17
CLTCL1-206ENST00000540896 SMC3Q9UQE7 1217 aa7.75□□□□□ -1.17
CLTCL1-206ENST00000540896 CCDC196A0A1B0GTZ2 297 aa7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 GOLGA8AA7E2F4 631 aa7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 GDF11O95390 407 aa7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 LARGE1O95461 756 aa7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 CALM1P0DP23 149 aa7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 CALM2P0DP24 149 aa7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 CALM3P0DP25 149 aa7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 SLURP2P0DP57 97 aa7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 VARSP26640 1264 aaKnown RBP7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 EVCP57679 992 aa7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 SH3BP2P78314 561 aa7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 INSM1Q01101 510 aaPredicted RBP7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 FMR1Q06787 632 aaKnown RBP eCLIP7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 CUL4AQ13619 759 aa7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 RAB3GAP1Q15042 981 aa7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 SEC23AQ15436 765 aa7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 NBPF12Q5TAG4 269 aaPredicted RBP7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 TATDN1Q6P1N9 297 aa7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 APOA5Q6Q788 366 aa7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 SGMS1Q86VZ5 419 aa7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 DGKHQ86XP1 1220 aa7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 CTCFLQ8NI51 663 aaPredicted RBP7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 GTF3C6Q969F1 213 aa7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 CDCA5Q96FF9 252 aa7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 INTS4Q96HW7 963 aaKnown RBP7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 MYL10Q9BUA6 226 aa7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 UNC93B1Q9H1C4 597 aa7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 KANSL2Q9H9L4 492 aa7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 NCOA5Q9HCD5 579 aaKnown RBP7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 CWC22Q9HCG8 908 aaKnown RBP7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 IL17RBQ9NRM6 502 aa7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 CLIP2Q9UDT6 1046 aa7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 MTMR7Q9Y216 660 aa7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 PPP2R3BQ9Y5P8 575 aa7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 PASKQ96RG2 1323 aa7.74□□□□□ -1.17
CLTCL1-206ENST00000540896 TERTO14746 1132 aaKnown RBP7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 CAPN5O15484 640 aaPredicted RBP7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 RAD21O60216 631 aa7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 CDKL5O76039 1030 aa7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 TTLL1O95922 423 aa7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 GH2P01242 217 aa7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 TOP1P11387 765 aaKnown RBP7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 SNRPBP14678 240 aaKnown RBP7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 RXRAP19793 462 aa7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 SCRN1Q12765 414 aa7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 NFX1Q12986 1120 aaKnown RBP7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 SEPT2Q15019 361 aa7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 RTN1Q16799 776 aa7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 CST9Q5W186 159 aa7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 TMEM179Q6ZVK1 233 aa7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 METTL16Q86W50 562 aaKnown RBP7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 FAM184AQ8NB25 1140 aa7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 FANCBQ8NB91 859 aa7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 PNMA1Q8ND90 353 aa7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 ANKS1AQ92625 1134 aa7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 DDX11Q96FC9 970 aa7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 CEP95Q96GE4 821 aa7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 TEPSINQ96N21 525 aa7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 TMEM47Q9BQJ4 181 aa7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 LLPHQ9BRT6 129 aaKnown RBP7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 ZNF341Q9BYN7 854 aa7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 DNAJC18Q9H819 358 aa7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 ZNF408Q9H9D4 720 aa7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 MTMR4Q9NYA4 1195 aa7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 ISY1Q9ULR0 285 aaKnown RBP7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 KIF3AQ9Y496 699 aa7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 BAZ2AQ9UIF9 1905 aaKnown RBP7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 COL2A1P02458 1487 aaPredicted RBP7.73□□□□□ -1.17
CLTCL1-206ENST00000540896 NAV1Q8NEY1 1877 aa7.72□□□□□ -1.17
CLTCL1-206ENST00000540896 WIPF1O43516 503 aa7.72□□□□□ -1.17
CLTCL1-206ENST00000540896 PPFIA3O75145 1194 aa7.72□□□□□ -1.17
CLTCL1-206ENST00000540896 DDAH1O94760 285 aa7.72□□□□□ -1.17
CLTCL1-206ENST00000540896 CELF2O95319 508 aaKnown RBP7.72□□□□□ -1.17
CLTCL1-206ENST00000540896 GJB2P29033 226 aa7.72□□□□□ -1.17
CLTCL1-206ENST00000540896 KIF5BP33176 963 aa7.72□□□□□ -1.17
CLTCL1-206ENST00000540896 NF2P35240 595 aa7.72□□□□□ -1.17
CLTCL1-206ENST00000540896 ADD1P35611 737 aaKnown RBP7.72□□□□□ -1.17
CLTCL1-206ENST00000540896 C1QTNF8P60827 252 aa7.72□□□□□ -1.17
CLTCL1-206ENST00000540896 AKAP17AQ02040 695 aaKnown RBP7.72□□□□□ -1.17
CLTCL1-206ENST00000540896 ICA1Q05084 483 aa7.72□□□□□ -1.17
CLTCL1-206ENST00000540896 PRKG1Q13976 671 aa7.72□□□□□ -1.17
CLTCL1-206ENST00000540896 PPP2R5BQ15173 497 aa7.72□□□□□ -1.17
CLTCL1-206ENST00000540896 RCSD1Q6JBY9 416 aa7.72□□□□□ -1.17
CLTCL1-206ENST00000540896 CLEC10AQ8IUN9 316 aa7.72□□□□□ -1.17
CLTCL1-206ENST00000540896 CCDC82Q8N4S0 544 aa7.72□□□□□ -1.17
CLTCL1-206ENST00000540896 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.72□□□□□ -1.17
CLTCL1-206ENST00000540896 PICK1Q9NRD5 415 aa7.72□□□□□ -1.17
CLTCL1-206ENST00000540896 RBM28Q9NW13 759 aaKnown RBP7.72□□□□□ -1.17
CLTCL1-206ENST00000540896 CHMP5Q9NZZ3 219 aa7.72□□□□□ -1.17
CLTCL1-206ENST00000540896 CDK5RAP2Q96SN8 1893 aa7.72□□□□□ -1.17
CLTCL1-206ENST00000540896 LAMA4Q16363 1823 aa7.71□□□□□ -1.17
CLTCL1-206ENST00000540896 IGKV6D-41A0A0C4DH26 115 aa7.71□□□□□ -1.18
CLTCL1-206ENST00000540896 PTPDC1A2A3K4 754 aa7.71□□□□□ -1.18
CLTCL1-206ENST00000540896 TMEM88BA6NKF7 163 aa7.71□□□□□ -1.18
CLTCL1-206ENST00000540896 SPTLC1O15269 473 aa7.71□□□□□ -1.18
CLTCL1-206ENST00000540896 PPP1R12BO60237 982 aaPredicted RBP7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms