RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 BYSLQ13895 437 aaKnown RBP10.5□□□□□ -0.73
CLIP1-214ENST00000540539 NKX1-1Q15270 411 aaPredicted RBP10.5□□□□□ -0.73
CLIP1-214ENST00000540539 QPCTQ16769 361 aa10.5□□□□□ -0.73
CLIP1-214ENST00000540539 RAD9BQ6WBX8 426 aa10.5□□□□□ -0.73
CLIP1-214ENST00000540539 FMR1NBQ8N0W7 255 aaPredicted RBP10.5□□□□□ -0.73
CLIP1-214ENST00000540539 CCT6BQ92526 530 aa10.5□□□□□ -0.73
CLIP1-214ENST00000540539 NAF1Q96HR8 494 aaKnown RBP10.5□□□□□ -0.73
CLIP1-214ENST00000540539 RMDN2Q96LZ7 410 aa10.5□□□□□ -0.73
CLIP1-214ENST00000540539 C8orf37Q96NL8 207 aa10.5□□□□□ -0.73
CLIP1-214ENST00000540539 RCOR1Q9UKL0 485 aa10.5□□□□□ -0.73
CLIP1-214ENST00000540539 TMCO1Q9UM00 188 aa10.5□□□□□ -0.73
CLIP1-214ENST00000540539 SRRM3A6NNA2 597 aaPredicted RBP10.5□□□□□ -0.73
CLIP1-214ENST00000540539 ELL2O00472 640 aaPredicted RBP10.5□□□□□ -0.73
CLIP1-214ENST00000540539 ADD1P35611 737 aaKnown RBP10.5□□□□□ -0.73
CLIP1-214ENST00000540539 NLRP12P59046 1061 aa10.5□□□□□ -0.73
CLIP1-214ENST00000540539 POLA2Q14181 598 aa10.5□□□□□ -0.73
CLIP1-214ENST00000540539 TAF11Q15544 211 aa10.5□□□□□ -0.73
CLIP1-214ENST00000540539 SGSM1Q2NKQ1 1148 aa10.5□□□□□ -0.73
CLIP1-214ENST00000540539 CCDC92Q53HC0 331 aaPredicted RBP10.5□□□□□ -0.73
CLIP1-214ENST00000540539 EMC10Q5UCC4 262 aa10.5□□□□□ -0.73
CLIP1-214ENST00000540539 TRIM68Q6AZZ1 485 aa10.5□□□□□ -0.73
CLIP1-214ENST00000540539 SYNE3Q6ZMZ3 975 aa10.5□□□□□ -0.73
CLIP1-214ENST00000540539 MAATS1Q7Z4T9 603 aa10.5□□□□□ -0.73
CLIP1-214ENST00000540539 ERICH1Q86X53 443 aa10.5□□□□□ -0.73
CLIP1-214ENST00000540539 TSEN2Q8NCE0 465 aaKnown RBP10.5□□□□□ -0.73
CLIP1-214ENST00000540539 DDX54Q8TDD1 881 aaKnown RBP10.5□□□□□ -0.73
CLIP1-214ENST00000540539 NGLY1Q96IV0 654 aa10.5□□□□□ -0.73
CLIP1-214ENST00000540539 ARHGEF10LQ9HCE6 1279 aa10.5□□□□□ -0.73
CLIP1-214ENST00000540539 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.5□□□□□ -0.73
CLIP1-214ENST00000540539 LNPEPQ9UIQ6 1025 aa10.5□□□□□ -0.73
CLIP1-214ENST00000540539 CYP46A1Q9Y6A2 500 aa10.5□□□□□ -0.73
CLIP1-214ENST00000540539 SYNRGQ9UMZ2 1314 aa10.5□□□□□ -0.73
CLIP1-214ENST00000540539 FAM200BP0CF97 657 aa10.49□□□□□ -0.73
CLIP1-214ENST00000540539 GHRP10912 638 aa10.49□□□□□ -0.73
CLIP1-214ENST00000540539 NR1D1P20393 614 aa10.49□□□□□ -0.73
CLIP1-214ENST00000540539 SESN3P58005 492 aa10.49□□□□□ -0.73
CLIP1-214ENST00000540539 MRPS35P82673 323 aaKnown RBP10.49□□□□□ -0.73
CLIP1-214ENST00000540539 LBRQ14739 615 aaKnown RBP10.49□□□□□ -0.73
CLIP1-214ENST00000540539 SLC4A8Q2Y0W8 1093 aa10.49□□□□□ -0.73
CLIP1-214ENST00000540539 RNF220Q5VTB9 566 aa10.49□□□□□ -0.73
CLIP1-214ENST00000540539 BICDL1Q6ZP65 573 aa10.49□□□□□ -0.73
CLIP1-214ENST00000540539 TOM1L2Q6ZVM7 507 aa10.49□□□□□ -0.73
CLIP1-214ENST00000540539 SPICE1Q8N0Z3 855 aa10.49□□□□□ -0.73
CLIP1-214ENST00000540539 NEK9Q8TD19 979 aa10.49□□□□□ -0.73
CLIP1-214ENST00000540539 P3H4Q92791 437 aa10.49□□□□□ -0.73
CLIP1-214ENST00000540539 MMS19Q96T76 1030 aa10.49□□□□□ -0.73
CLIP1-214ENST00000540539 ZSWIM6Q9HCJ5 1215 aa10.49□□□□□ -0.73
CLIP1-214ENST00000540539 BARX2Q9UMQ3 279 aaPredicted RBP10.49□□□□□ -0.73
CLIP1-214ENST00000540539 NWD2Q9ULI1 1742 aa10.49□□□□□ -0.73
CLIP1-214ENST00000540539 KRT14P02533 472 aa10.49□□□□□ -0.73
CLIP1-214ENST00000540539 RHBDL3P58872 404 aa10.49□□□□□ -0.73
CLIP1-214ENST00000540539 MEX3CQ5U5Q3 659 aaKnown RBP10.49□□□□□ -0.73
CLIP1-214ENST00000540539 CCDC63Q8NA47 563 aa10.49□□□□□ -0.73
CLIP1-214ENST00000540539 ZBTB8BQ8NAP8 495 aaPredicted RBP10.49□□□□□ -0.73
CLIP1-214ENST00000540539 KIFAP3Q92845 792 aa10.49□□□□□ -0.73
CLIP1-214ENST00000540539 SEC16BQ96JE7 1060 aa10.49□□□□□ -0.73
CLIP1-214ENST00000540539 PHACTR3Q96KR7 559 aa10.49□□□□□ -0.73
CLIP1-214ENST00000540539 OXCT2Q9BYC2 517 aaPredicted RBP10.49□□□□□ -0.73
CLIP1-214ENST00000540539 PPANQ9NQ55 473 aaKnown RBP10.49□□□□□ -0.73
CLIP1-214ENST00000540539 TRPV5Q9NQA5 729 aa10.49□□□□□ -0.73
CLIP1-214ENST00000540539 ATP8A1Q9Y2Q0 1164 aa10.49□□□□□ -0.73
CLIP1-214ENST00000540539 CEP104O60308 925 aa10.48□□□□□ -0.73
CLIP1-214ENST00000540539 KRT38O76015 456 aa10.48□□□□□ -0.73
CLIP1-214ENST00000540539 XBP1P17861 261 aa10.48□□□□□ -0.73
CLIP1-214ENST00000540539 ZNF268Q14587 947 aaPredicted RBP10.48□□□□□ -0.73
CLIP1-214ENST00000540539 SLC15A3Q8IY34 581 aa10.48□□□□□ -0.73
CLIP1-214ENST00000540539 STAG2Q8N3U4 1231 aa10.48□□□□□ -0.73
CLIP1-214ENST00000540539 GBP7Q8N8V2 638 aaPredicted RBP10.48□□□□□ -0.73
CLIP1-214ENST00000540539 HDAC7Q8WUI4 952 aa10.48□□□□□ -0.73
CLIP1-214ENST00000540539 DYDC1Q8WWB3 177 aa10.48□□□□□ -0.73
CLIP1-214ENST00000540539 IWS1Q96ST2 819 aa10.48□□□□□ -0.73
CLIP1-214ENST00000540539 GPCPD1Q9NPB8 672 aa10.48□□□□□ -0.73
CLIP1-214ENST00000540539 DMAP1Q9NPF5 467 aaPredicted RBP10.48□□□□□ -0.73
CLIP1-214ENST00000540539 NCAPD2Q15021 1401 aa10.48□□□□□ -0.73
CLIP1-214ENST00000540539 SLIT2O94813 1529 aa10.48□□□□□ -0.73
CLIP1-214ENST00000540539 NRAPQ86VF7 1730 aa10.48□□□□□ -0.73
CLIP1-214ENST00000540539 SP100P23497 879 aaPredicted RBP10.48□□□□□ -0.73
CLIP1-214ENST00000540539 CCNG1P51959 295 aa10.48□□□□□ -0.73
CLIP1-214ENST00000540539 MYL5Q02045 173 aa10.48□□□□□ -0.73
CLIP1-214ENST00000540539 PLOD1Q02809 727 aaPredicted RBP10.48□□□□□ -0.73
CLIP1-214ENST00000540539 POSTNQ15063 836 aa10.48□□□□□ -0.73
CLIP1-214ENST00000540539 KIAA0753Q2KHM9 967 aa10.48□□□□□ -0.73
CLIP1-214ENST00000540539 SPECC1LQ69YQ0 1117 aa10.48□□□□□ -0.73
CLIP1-214ENST00000540539 NCCRP1Q6ZVX7 275 aaPredicted RBP10.48□□□□□ -0.73
CLIP1-214ENST00000540539 CACNA2D3Q8IZS8 1091 aa10.48□□□□□ -0.73
CLIP1-214ENST00000540539 IFT43Q96FT9 208 aa10.48□□□□□ -0.73
CLIP1-214ENST00000540539 MEIS3Q99687 375 aa10.48□□□□□ -0.73
CLIP1-214ENST00000540539 HINFPQ9BQA5 517 aa10.48□□□□□ -0.73
CLIP1-214ENST00000540539 PCDH18Q9HCL0 1135 aa10.48□□□□□ -0.73
CLIP1-214ENST00000540539 KCNMB3Q9NPA1 279 aa10.48□□□□□ -0.73
CLIP1-214ENST00000540539 PAIP2BQ9ULR5 123 aaKnown RBP10.48□□□□□ -0.73
CLIP1-214ENST00000540539 TMCC1O94876 653 aa10.47□□□□□ -0.73
CLIP1-214ENST00000540539 CCND1P24385 295 aa10.47□□□□□ -0.73
CLIP1-214ENST00000540539 PHEXP78562 749 aa10.47□□□□□ -0.73
CLIP1-214ENST00000540539 FOXB2Q5VYV0 432 aa10.47□□□□□ -0.73
CLIP1-214ENST00000540539 PI16Q6UXB8 463 aa10.47□□□□□ -0.73
CLIP1-214ENST00000540539 TRAPPC11Q7Z392 1133 aa10.47□□□□□ -0.73
CLIP1-214ENST00000540539 UBE3BQ7Z3V4 1068 aa10.47□□□□□ -0.73
CLIP1-214ENST00000540539 EXOC3L1Q86VI1 746 aa10.47□□□□□ -0.73
CLIP1-214ENST00000540539 BRF1Q92994 677 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms