RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 PI4K2BQ8TCG2 481 aa14.28□□□□□ -0.12
CBX3P4-202ENST00000540428 GMCL1Q96IK5 515 aa14.28□□□□□ -0.12
CBX3P4-202ENST00000540428 FGD4Q96M96 766 aa14.28□□□□□ -0.12
CBX3P4-202ENST00000540428 NAPBQ9H115 298 aa14.28□□□□□ -0.12
CBX3P4-202ENST00000540428 UPF3AQ9H1J1 476 aaKnown RBP14.28□□□□□ -0.12
CBX3P4-202ENST00000540428 PLXNA1Q9UIW2 1896 aa14.28□□□□□ -0.12
CBX3P4-202ENST00000540428 A0A0C4DFX4 3053 aa14.28□□□□□ -0.12
CBX3P4-202ENST00000540428 PLA2G6O60733 806 aa14.27□□□□□ -0.13
CBX3P4-202ENST00000540428 C6orf222P0C671 652 aaPredicted RBP14.27□□□□□ -0.13
CBX3P4-202ENST00000540428 CDK7P50613 346 aa14.27□□□□□ -0.13
CBX3P4-202ENST00000540428 STAT2P52630 851 aa14.27□□□□□ -0.13
CBX3P4-202ENST00000540428 EPHB4P54760 987 aa14.27□□□□□ -0.13
CBX3P4-202ENST00000540428 NKX3-2P78367 333 aa14.27□□□□□ -0.13
CBX3P4-202ENST00000540428 TFAP4Q01664 338 aa14.27□□□□□ -0.13
CBX3P4-202ENST00000540428 PPARAQ07869 468 aa14.27□□□□□ -0.13
CBX3P4-202ENST00000540428 CCDC144BQ3MJ40 725 aa14.27□□□□□ -0.13
CBX3P4-202ENST00000540428 ZMYM1Q5SVZ6 1142 aa14.27□□□□□ -0.13
CBX3P4-202ENST00000540428 ARMCX2Q7L311 632 aa14.27□□□□□ -0.13
CBX3P4-202ENST00000540428 CHURC1Q8WUH1 139 aa14.27□□□□□ -0.13
CBX3P4-202ENST00000540428 SEC62Q99442 399 aaKnown RBP14.27□□□□□ -0.13
CBX3P4-202ENST00000540428 FSD1Q9BTV5 496 aa14.27□□□□□ -0.13
CBX3P4-202ENST00000540428 TTYH1Q9H313 450 aaPredicted RBP14.27□□□□□ -0.13
CBX3P4-202ENST00000540428 ACAD9Q9H845 621 aa14.27□□□□□ -0.13
CBX3P4-202ENST00000540428 TBX21Q9UL17 535 aa14.27□□□□□ -0.13
CBX3P4-202ENST00000540428 MYADML2A6NDP7 307 aa14.26□□□□□ -0.13
CBX3P4-202ENST00000540428 TMEM232C9JQI7 657 aa14.26□□□□□ -0.13
CBX3P4-202ENST00000540428 TIMP1P01033 207 aa14.26□□□□□ -0.13
CBX3P4-202ENST00000540428 ASGR1P07306 291 aa14.26□□□□□ -0.13
CBX3P4-202ENST00000540428 TKFCQ3LXA3 575 aa14.26□□□□□ -0.13
CBX3P4-202ENST00000540428 CCDC144CPQ8IYA2 1237 aa14.26□□□□□ -0.13
CBX3P4-202ENST00000540428 FAM133AQ8N9E0 248 aa14.26□□□□□ -0.13
CBX3P4-202ENST00000540428 STAG1Q8WVM7 1258 aa14.26□□□□□ -0.13
CBX3P4-202ENST00000540428 COL25A1Q9BXS0 654 aaPredicted RBP14.26□□□□□ -0.13
CBX3P4-202ENST00000540428 KATNBL1Q9H079 304 aa14.26□□□□□ -0.13
CBX3P4-202ENST00000540428 ZNF536O15090 1300 aa14.25□□□□□ -0.13
CBX3P4-202ENST00000540428 A0A0U1RQG5 324 aaPredicted RBP14.25□□□□□ -0.13
CBX3P4-202ENST00000540428 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.25□□□□□ -0.13
CBX3P4-202ENST00000540428 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.25□□□□□ -0.13
CBX3P4-202ENST00000540428 ASB14A6NK59 587 aa14.25□□□□□ -0.13
CBX3P4-202ENST00000540428 ADCY6O43306 1168 aa14.25□□□□□ -0.13
CBX3P4-202ENST00000540428 SLC1A4P43007 532 aa14.25□□□□□ -0.13
CBX3P4-202ENST00000540428 MFSD5Q6N075 450 aa14.25□□□□□ -0.13
CBX3P4-202ENST00000540428 CCDC174Q6PII3 467 aa14.25□□□□□ -0.13
CBX3P4-202ENST00000540428 MAFAQ8NHW3 353 aaPredicted RBP14.25□□□□□ -0.13
CBX3P4-202ENST00000540428 A1CFQ9NQ94 594 aaKnown RBP14.25□□□□□ -0.13
CBX3P4-202ENST00000540428 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.25□□□□□ -0.13
CBX3P4-202ENST00000540428 ARVCFO00192 962 aa14.24□□□□□ -0.13
CBX3P4-202ENST00000540428 MX1P20591 662 aa14.24□□□□□ -0.13
CBX3P4-202ENST00000540428 PPIGQ13427 754 aaKnown RBP eCLIP14.24□□□□□ -0.13
CBX3P4-202ENST00000540428 GNASQ5JWF2 1037 aa14.24□□□□□ -0.13
CBX3P4-202ENST00000540428 FAM126BQ8IXS8 530 aa14.24□□□□□ -0.13
CBX3P4-202ENST00000540428 MYLIPQ8WY64 445 aa14.24□□□□□ -0.13
CBX3P4-202ENST00000540428 SEZ6LQ9BYH1 1024 aa14.24□□□□□ -0.13
CBX3P4-202ENST00000540428 HOMER2Q9NSB8 354 aa14.24□□□□□ -0.13
CBX3P4-202ENST00000540428 RNF146Q9NTX7 359 aa14.24□□□□□ -0.13
CBX3P4-202ENST00000540428 PCDHB15Q9Y5E8 787 aa14.24□□□□□ -0.13
CBX3P4-202ENST00000540428 LAMA2P24043 3122 aaKnown RBP14.24□□□□□ -0.13
CBX3P4-202ENST00000540428 CUL9Q8IWT3 2517 aa14.23□□□□□ -0.13
CBX3P4-202ENST00000540428 TSPY2A6NKD2 308 aa14.23□□□□□ -0.13
CBX3P4-202ENST00000540428 CTAGE5O15320 804 aa14.23□□□□□ -0.13
CBX3P4-202ENST00000540428 TLR3O15455 904 aaKnown RBP14.23□□□□□ -0.13
CBX3P4-202ENST00000540428 CABYRO75952 493 aa14.23□□□□□ -0.13
CBX3P4-202ENST00000540428 FOSL2P15408 326 aa14.23□□□□□ -0.13
CBX3P4-202ENST00000540428 MCCP23508 829 aa14.23□□□□□ -0.13
CBX3P4-202ENST00000540428 NOVP48745 357 aa14.23□□□□□ -0.13
CBX3P4-202ENST00000540428 CNTN2Q02246 1040 aa14.23□□□□□ -0.13
CBX3P4-202ENST00000540428 IKQ13123 557 aaPredicted RBP14.23□□□□□ -0.13
CBX3P4-202ENST00000540428 RCSD1Q6JBY9 416 aa14.23□□□□□ -0.13
CBX3P4-202ENST00000540428 TMEM199Q8N511 208 aa14.23□□□□□ -0.13
CBX3P4-202ENST00000540428 OTUD7AQ8TE49 926 aaPredicted RBP14.23□□□□□ -0.13
CBX3P4-202ENST00000540428 VTI1AQ96AJ9 217 aa14.23□□□□□ -0.13
CBX3P4-202ENST00000540428 AGBL1Q96MI9 1066 aa14.23□□□□□ -0.13
CBX3P4-202ENST00000540428 TRERF1Q96PN7 1200 aa14.23□□□□□ -0.13
CBX3P4-202ENST00000540428 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.23□□□□□ -0.13
CBX3P4-202ENST00000540428 ANAPC4Q9UJX5 808 aa14.23□□□□□ -0.13
CBX3P4-202ENST00000540428 ISY1Q9ULR0 285 aaKnown RBP14.23□□□□□ -0.13
CBX3P4-202ENST00000540428 STX8Q9UNK0 236 aa14.23□□□□□ -0.13
CBX3P4-202ENST00000540428 MYH4Q9Y623 1939 aa14.23□□□□□ -0.13
CBX3P4-202ENST00000540428 SALL3Q9BXA9 1300 aa14.22□□□□□ -0.13
CBX3P4-202ENST00000540428 SOWAHBA6NEL2 793 aa14.22□□□□□ -0.13
CBX3P4-202ENST00000540428 FOXP2O15409 715 aa14.22□□□□□ -0.13
CBX3P4-202ENST00000540428 DNAJB2P25686 324 aa14.22□□□□□ -0.13
CBX3P4-202ENST00000540428 IRX5P78411 483 aaPredicted RBP14.22□□□□□ -0.13
CBX3P4-202ENST00000540428 TNFAIP2Q03169 654 aa14.22□□□□□ -0.13
CBX3P4-202ENST00000540428 CCDC129Q6ZRS4 1044 aa14.22□□□□□ -0.13
CBX3P4-202ENST00000540428 IL17RBQ9NRM6 502 aa14.22□□□□□ -0.13
CBX3P4-202ENST00000540428 GNEQ9Y223 722 aaKnown RBP14.22□□□□□ -0.13
CBX3P4-202ENST00000540428 Q9Y3F1 56 aa14.22□□□□□ -0.13
CBX3P4-202ENST00000540428 ORC4O43929 436 aa14.21□□□□□ -0.13
CBX3P4-202ENST00000540428 CD4P01730 458 aa14.21□□□□□ -0.13
CBX3P4-202ENST00000540428 FGRP09769 529 aa14.21□□□□□ -0.13
CBX3P4-202ENST00000540428 ALAS1P13196 640 aa14.21□□□□□ -0.13
CBX3P4-202ENST00000540428 ALX1Q15699 326 aa14.21□□□□□ -0.13
CBX3P4-202ENST00000540428 TMEM240Q5SV17 173 aa14.21□□□□□ -0.13
CBX3P4-202ENST00000540428 RASIP1Q5U651 963 aa14.21□□□□□ -0.13
CBX3P4-202ENST00000540428 IQSEC1Q6DN90 963 aa14.21□□□□□ -0.13
CBX3P4-202ENST00000540428 PSRC1Q6PGN9 363 aaPredicted RBP14.21□□□□□ -0.13
CBX3P4-202ENST00000540428 KCTD1Q719H9 257 aa14.21□□□□□ -0.13
CBX3P4-202ENST00000540428 TICAM2Q86XR7 235 aa14.21□□□□□ -0.13
CBX3P4-202ENST00000540428 SLC43A3Q8NBI5 491 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms