RNA–Protein interactions for RNA: ENST00000538070.1

UBE3B-208, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 5

Gene UBE3B, Length 3,655 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-208ENST00000538070 SCAF8Q9UPN6 1271 aaKnown RBP9.8□□□□□ -0.84
UBE3B-208ENST00000538070 FAM237AA0A1B0GTK4 181 aa9.8□□□□□ -0.84
UBE3B-208ENST00000538070 STXBP3O00186 592 aa9.8□□□□□ -0.84
UBE3B-208ENST00000538070 GTPBP6O43824 516 aaPredicted RBP9.8□□□□□ -0.84
UBE3B-208ENST00000538070 TDP2O95551 362 aa9.8□□□□□ -0.84
UBE3B-208ENST00000538070 APBA3O96018 575 aa9.8□□□□□ -0.84
UBE3B-208ENST00000538070 RCAN1P53805 252 aa9.8□□□□□ -0.84
UBE3B-208ENST00000538070 PMS1P54277 932 aaKnown RBP9.8□□□□□ -0.84
UBE3B-208ENST00000538070 NFIAQ12857 509 aa9.8□□□□□ -0.84
UBE3B-208ENST00000538070 STIM1Q13586 685 aa9.8□□□□□ -0.84
UBE3B-208ENST00000538070 ERO1AQ96HE7 468 aa9.8□□□□□ -0.84
UBE3B-208ENST00000538070 DDX4Q9NQI0 724 aaKnown RBP9.8□□□□□ -0.84
UBE3B-208ENST00000538070 DISC1Q9NRI5 854 aa9.8□□□□□ -0.84
UBE3B-208ENST00000538070 EXOC1Q9NV70 894 aa9.8□□□□□ -0.84
UBE3B-208ENST00000538070 PSDA5PKW4 1024 aaPredicted RBP9.79□□□□□ -0.84
UBE3B-208ENST00000538070 KIF2AO00139 706 aaPredicted RBP9.79□□□□□ -0.84
UBE3B-208ENST00000538070 CTIFO43310 598 aaKnown RBP9.79□□□□□ -0.84
UBE3B-208ENST00000538070 SEC31AO94979 1220 aaKnown RBP9.79□□□□□ -0.84
UBE3B-208ENST00000538070 GDF11O95390 407 aa9.79□□□□□ -0.84
UBE3B-208ENST00000538070 ERCC5P28715 1186 aaPredicted RBP9.79□□□□□ -0.84
UBE3B-208ENST00000538070 PDE4CQ08493 712 aa9.79□□□□□ -0.84
UBE3B-208ENST00000538070 NR1I3Q14994 352 aa9.79□□□□□ -0.84
UBE3B-208ENST00000538070 USH1GQ495M9 461 aa9.79□□□□□ -0.84
UBE3B-208ENST00000538070 RAD9BQ6WBX8 426 aa9.79□□□□□ -0.84
UBE3B-208ENST00000538070 TRIML1Q8N9V2 468 aa9.79□□□□□ -0.84
UBE3B-208ENST00000538070 ST7Q9NRC1 585 aa9.79□□□□□ -0.84
UBE3B-208ENST00000538070 BARHL2Q9NY43 387 aa9.79□□□□□ -0.84
UBE3B-208ENST00000538070 CGNQ9P2M7 1197 aaKnown RBP9.79□□□□□ -0.84
UBE3B-208ENST00000538070 CCP110O43303 1012 aa9.79□□□□□ -0.84
UBE3B-208ENST00000538070 ABL1P00519 1130 aa9.79□□□□□ -0.84
UBE3B-208ENST00000538070 MMP10P09238 476 aa9.79□□□□□ -0.84
UBE3B-208ENST00000538070 CCDC175P0C221 793 aa9.79□□□□□ -0.84
UBE3B-208ENST00000538070 ZNF18P17022 549 aa9.79□□□□□ -0.84
UBE3B-208ENST00000538070 DNA2P51530 1060 aa9.79□□□□□ -0.84
UBE3B-208ENST00000538070 COPB1P53618 953 aaKnown RBP9.79□□□□□ -0.84
UBE3B-208ENST00000538070 REXO1L1PQ8IX06 675 aa9.79□□□□□ -0.84
UBE3B-208ENST00000538070 ZFPM1Q8IX07 1006 aa9.79□□□□□ -0.84
UBE3B-208ENST00000538070 SPICE1Q8N0Z3 855 aa9.79□□□□□ -0.84
UBE3B-208ENST00000538070 FNBP4Q8N3X1 1017 aaPredicted RBP9.79□□□□□ -0.84
UBE3B-208ENST00000538070 CSGALNACT2Q8N6G5 542 aa9.79□□□□□ -0.84
UBE3B-208ENST00000538070 ANKRD36CQ5JPF3 1778 aa9.79□□□□□ -0.84
UBE3B-208ENST00000538070 C4AP0C0L4 1744 aa9.79□□□□□ -0.84
UBE3B-208ENST00000538070 C4BP0C0L5 1744 aa9.79□□□□□ -0.84
UBE3B-208ENST00000538070 B4DLN1 442 aa9.79□□□□□ -0.84
UBE3B-208ENST00000538070 RNF225M0QZC1 329 aaPredicted RBP9.79□□□□□ -0.84
UBE3B-208ENST00000538070 POLR3GO15318 223 aaPredicted RBP9.79□□□□□ -0.84
UBE3B-208ENST00000538070 OR52Z1P0C646 297 aa9.79□□□□□ -0.84
UBE3B-208ENST00000538070 MCM6Q14566 821 aa9.79□□□□□ -0.84
UBE3B-208ENST00000538070 ZYXQ15942 572 aaKnown RBP9.79□□□□□ -0.84
UBE3B-208ENST00000538070 ZNF771Q7L3S4 317 aaPredicted RBP9.79□□□□□ -0.84
UBE3B-208ENST00000538070 CCDC47Q96A33 483 aaKnown RBP9.79□□□□□ -0.84
UBE3B-208ENST00000538070 DRC1Q96MC2 740 aa9.79□□□□□ -0.84
UBE3B-208ENST00000538070 LRWD1Q9UFC0 647 aa9.79□□□□□ -0.84
UBE3B-208ENST00000538070 TRIM21P19474 475 aaKnown RBP9.78□□□□□ -0.84
UBE3B-208ENST00000538070 GNA11P29992 359 aa9.78□□□□□ -0.84
UBE3B-208ENST00000538070 KLK7P49862 253 aa9.78□□□□□ -0.84
UBE3B-208ENST00000538070 PDXDC2PQ6P474 469 aa9.78□□□□□ -0.84
UBE3B-208ENST00000538070 NEK8Q86SG6 692 aa9.78□□□□□ -0.84
UBE3B-208ENST00000538070 SLF2Q8IX21 1173 aa9.78□□□□□ -0.84
UBE3B-208ENST00000538070 CALML4Q96GE6 196 aa9.78□□□□□ -0.84
UBE3B-208ENST00000538070 KANSL2Q9H9L4 492 aa9.78□□□□□ -0.84
UBE3B-208ENST00000538070 TRPC5Q9UL62 973 aaPredicted RBP9.78□□□□□ -0.84
UBE3B-208ENST00000538070 USP17L15C9J2P7 530 aa9.78□□□□□ -0.84
UBE3B-208ENST00000538070 USP17L13C9JLJ4 530 aa9.78□□□□□ -0.84
UBE3B-208ENST00000538070 USP17L11C9JVI0 530 aa9.78□□□□□ -0.84
UBE3B-208ENST00000538070 USP17L18D6R9N7 530 aa9.78□□□□□ -0.84
UBE3B-208ENST00000538070 USP17L22D6RA61 530 aa9.78□□□□□ -0.84
UBE3B-208ENST00000538070 USP17L17D6RBQ6 530 aa9.78□□□□□ -0.84
UBE3B-208ENST00000538070 USP17L19D6RCP7 530 aa9.78□□□□□ -0.84
UBE3B-208ENST00000538070 USP17L20D6RJB6 530 aa9.78□□□□□ -0.84
UBE3B-208ENST00000538070 PSMA7O14818 248 aa9.78□□□□□ -0.84
UBE3B-208ENST00000538070 BBOX1O75936 387 aa9.78□□□□□ -0.84
UBE3B-208ENST00000538070 FGRP09769 529 aa9.78□□□□□ -0.84
UBE3B-208ENST00000538070 PLCG2P16885 1265 aa9.78□□□□□ -0.84
UBE3B-208ENST00000538070 LONP1P36776 959 aaKnown RBP9.78□□□□□ -0.84
UBE3B-208ENST00000538070 USP17L24Q0WX57 530 aa9.78□□□□□ -0.84
UBE3B-208ENST00000538070 CALCRLQ16602 461 aa9.78□□□□□ -0.84
UBE3B-208ENST00000538070 USP17L6PQ6QN14 398 aa9.78□□□□□ -0.84
UBE3B-208ENST00000538070 KRT27Q7Z3Y8 459 aa9.78□□□□□ -0.84
UBE3B-208ENST00000538070 ANKRD7Q92527 254 aa9.78□□□□□ -0.84
UBE3B-208ENST00000538070 USP17L10C9JJH3 530 aa9.78□□□□□ -0.84
UBE3B-208ENST00000538070 KIF5CO60282 957 aa9.78□□□□□ -0.84
UBE3B-208ENST00000538070 KRT18P05783 430 aaKnown RBP9.78□□□□□ -0.84
UBE3B-208ENST00000538070 CERS5Q8N5B7 392 aa9.78□□□□□ -0.84
UBE3B-208ENST00000538070 CHP1Q99653 195 aa9.78□□□□□ -0.84
UBE3B-208ENST00000538070 RMND1Q9NWS8 449 aa9.78□□□□□ -0.84
UBE3B-208ENST00000538070 TRIM10Q9UDY6 481 aa9.78□□□□□ -0.84
UBE3B-208ENST00000538070 ADD3Q9UEY8 706 aaKnown RBP9.78□□□□□ -0.84
UBE3B-208ENST00000538070 GPR75-ASB3A0A0A6YYF3 556 aa9.77□□□□□ -0.84
UBE3B-208ENST00000538070 A0A1B0GTH6 734 aa9.77□□□□□ -0.84
UBE3B-208ENST00000538070 PALM3A6NDB9 673 aaPredicted RBP9.77□□□□□ -0.84
UBE3B-208ENST00000538070 ENC1O14682 589 aa9.77□□□□□ -0.84
UBE3B-208ENST00000538070 RHOXF2BP0C7M4 288 aa9.77□□□□□ -0.84
UBE3B-208ENST00000538070 ADCY7P51828 1080 aa9.77□□□□□ -0.84
UBE3B-208ENST00000538070 RHBDL3P58872 404 aa9.77□□□□□ -0.84
UBE3B-208ENST00000538070 STK4Q13043 487 aa9.77□□□□□ -0.84
UBE3B-208ENST00000538070 NEDD1Q8NHV4 660 aa9.77□□□□□ -0.84
UBE3B-208ENST00000538070 SNX29Q8TEQ0 813 aa9.77□□□□□ -0.84
UBE3B-208ENST00000538070 CTAGE1Q96RT6 745 aa9.77□□□□□ -0.84
UBE3B-208ENST00000538070 RHOXF2Q9BQY4 288 aa9.77□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms