RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, human

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-238	ENST00000534647	NDUFB10	O96000	172 aa		13.78	□□□□□ -0.2
CTNND1-238	ENST00000534647	FDX1	P10109	184 aa		13.78	□□□□□ -0.2
CTNND1-238	ENST00000534647	CST5	P28325	142 aa	Predicted RBP	13.78	□□□□□ -0.2
CTNND1-238	ENST00000534647	OAZ1	P54368	228 aa		13.78	□□□□□ -0.2
CTNND1-238	ENST00000534647	FAAP100	Q0VG06	881 aa		13.78	□□□□□ -0.2
CTNND1-238	ENST00000534647	SNRNP48	Q6IEG0	339 aa	Known RBP	13.78	□□□□□ -0.2
CTNND1-238	ENST00000534647	SPDYE1	Q8NFV5	336 aa	Predicted RBP	13.78	□□□□□ -0.2
CTNND1-238	ENST00000534647	APPBP2	Q92624	585 aa		13.78	□□□□□ -0.2
CTNND1-238	ENST00000534647	OSBP2	Q969R2	916 aa		13.78	□□□□□ -0.2
CTNND1-238	ENST00000534647	BCL11A	Q9H165	835 aa		13.78	□□□□□ -0.2
CTNND1-238	ENST00000534647	TTYH1	Q9H313	450 aa	Predicted RBP	13.78	□□□□□ -0.2
CTNND1-238	ENST00000534647	DCTPP1	Q9H773	170 aa		13.78	□□□□□ -0.2
CTNND1-238	ENST00000534647	SLC38A10	Q9HBR0	1119 aa		13.78	□□□□□ -0.2
CTNND1-238	ENST00000534647	RCAN3	Q9UKA8	241 aa		13.78	□□□□□ -0.2
CTNND1-238	ENST00000534647	RIPK3	Q9Y572	518 aa		13.78	□□□□□ -0.2
CTNND1-238	ENST00000534647	ELP1	O95163	1332 aa		13.78	□□□□□ -0.2
CTNND1-238	ENST00000534647	MYH8	P13535	1937 aa		13.78	□□□□□ -0.2
CTNND1-238	ENST00000534647	GREB1L	Q9C091	1923 aa	Predicted RBP	13.78	□□□□□ -0.2
CTNND1-238	ENST00000534647	SMCHD1	A6NHR9	2005 aa		13.78	□□□□□ -0.2
CTNND1-238	ENST00000534647	DCDC2C	A8MYV0	355 aa		13.77	□□□□□ -0.21
CTNND1-238	ENST00000534647	RAD21	O60216	631 aa		13.77	□□□□□ -0.21
CTNND1-238	ENST00000534647	RAG1	P15918	1043 aa		13.77	□□□□□ -0.21
CTNND1-238	ENST00000534647	PDE4A	P27815	886 aa		13.77	□□□□□ -0.21
CTNND1-238	ENST00000534647	MLLT3	P42568	568 aa	Predicted RBP	13.77	□□□□□ -0.21
CTNND1-238	ENST00000534647	CDK7	P50613	346 aa		13.77	□□□□□ -0.21
CTNND1-238	ENST00000534647	EPHB4	P54760	987 aa		13.77	□□□□□ -0.21
CTNND1-238	ENST00000534647	NKX3-2	P78367	333 aa		13.77	□□□□□ -0.21
CTNND1-238	ENST00000534647	KCNA10	Q16322	511 aa		13.77	□□□□□ -0.21
CTNND1-238	ENST00000534647	GMCL1P1	Q8NEA9	526 aa		13.77	□□□□□ -0.21
CTNND1-238	ENST00000534647	CHST13	Q8NET6	341 aa		13.77	□□□□□ -0.21
CTNND1-238	ENST00000534647	NUP88	Q99567	741 aa	Predicted RBP	13.77	□□□□□ -0.21
CTNND1-238	ENST00000534647	ABHD16B	Q9H3Z7	469 aa		13.77	□□□□□ -0.21
CTNND1-238	ENST00000534647	TMEM39A	Q9NV64	488 aa		13.77	□□□□□ -0.21
CTNND1-238	ENST00000534647	MTMR4	Q9NYA4	1195 aa		13.77	□□□□□ -0.21
CTNND1-238	ENST00000534647	CLIP2	Q9UDT6	1046 aa		13.77	□□□□□ -0.21
CTNND1-238	ENST00000534647	FBXO40	Q9UH90	709 aa		13.77	□□□□□ -0.21
CTNND1-238	ENST00000534647	FEM1B	Q9UK73	627 aa		13.77	□□□□□ -0.21
CTNND1-238	ENST00000534647	SYNRG	Q9UMZ2	1314 aa		13.77	□□□□□ -0.21
CTNND1-238	ENST00000534647	COL11A1	P12107	1806 aa	Predicted RBP	13.76	□□□□□ -0.21
CTNND1-238	ENST00000534647	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	13.76	□□□□□ -0.21
CTNND1-238	ENST00000534647	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	13.76	□□□□□ -0.21
CTNND1-238	ENST00000534647	MINDY4B	A8MYZ0	360 aa		13.76	□□□□□ -0.21
CTNND1-238	ENST00000534647	PATL2	C9JE40	543 aa	Known RBP	13.76	□□□□□ -0.21
CTNND1-238	ENST00000534647	SMARCA5	O60264	1052 aa	Predicted RBP	13.76	□□□□□ -0.21
CTNND1-238	ENST00000534647	PQBP1	O60828	265 aa	Known RBP	13.76	□□□□□ -0.21
CTNND1-238	ENST00000534647	TIMP1	P01033	207 aa		13.76	□□□□□ -0.21
CTNND1-238	ENST00000534647	FPGS	Q05932	587 aa		13.76	□□□□□ -0.21
CTNND1-238	ENST00000534647	CAMK2B	Q13554	666 aa		13.76	□□□□□ -0.21
CTNND1-238	ENST00000534647	ACVR2B	Q13705	512 aa		13.76	□□□□□ -0.21
CTNND1-238	ENST00000534647	ZNF444	Q8N0Y2	327 aa	Predicted RBP	13.76	□□□□□ -0.21
CTNND1-238	ENST00000534647	PCSK9	Q8NBP7	692 aa	Known RBP	13.76	□□□□□ -0.21
CTNND1-238	ENST00000534647	MAFA	Q8NHW3	353 aa	Predicted RBP	13.76	□□□□□ -0.21
CTNND1-238	ENST00000534647	GPATCH3	Q96I76	525 aa		13.76	□□□□□ -0.21
CTNND1-238	ENST00000534647	UPF3A	Q9H1J1	476 aa	Known RBP	13.76	□□□□□ -0.21
CTNND1-238	ENST00000534647	STARD7	Q9NQZ5	370 aa		13.76	□□□□□ -0.21
CTNND1-238	ENST00000534647	MROH7	Q68CQ1	1323 aa		13.75	□□□□□ -0.21
CTNND1-238	ENST00000534647	GPAA1	O43292	621 aa		13.75	□□□□□ -0.21
CTNND1-238	ENST00000534647	TTLL1	O95922	423 aa		13.75	□□□□□ -0.21
CTNND1-238	ENST00000534647	GJA9	P57773	515 aa		13.75	□□□□□ -0.21
CTNND1-238	ENST00000534647	LRRFIP1	Q32MZ4	808 aa	Known RBP	13.75	□□□□□ -0.21
CTNND1-238	ENST00000534647	NEDD1	Q8NHV4	660 aa		13.75	□□□□□ -0.21
CTNND1-238	ENST00000534647	RNPC3	Q96LT9	517 aa	Known RBP	13.75	□□□□□ -0.21
CTNND1-238	ENST00000534647	FGD4	Q96M96	766 aa		13.75	□□□□□ -0.21
CTNND1-238	ENST00000534647	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	13.75	□□□□□ -0.21
CTNND1-238	ENST00000534647	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	13.75	□□□□□ -0.21
CTNND1-238	ENST00000534647	TBX21	Q9UL17	535 aa		13.75	□□□□□ -0.21
CTNND1-238	ENST00000534647	LAMA2	P24043	3122 aa	Known RBP	13.75	□□□□□ -0.21
CTNND1-238	ENST00000534647	PLIN4	Q96Q06	1357 aa		13.74	□□□□□ -0.21
CTNND1-238	ENST00000534647	PLA2G6	O60733	806 aa		13.74	□□□□□ -0.21
CTNND1-238	ENST00000534647	C20orf194	Q5TEA3	1177 aa		13.74	□□□□□ -0.21
CTNND1-238	ENST00000534647	ERICH6B	Q5W0A0	696 aa		13.74	□□□□□ -0.21
CTNND1-238	ENST00000534647	MFSD5	Q6N075	450 aa		13.74	□□□□□ -0.21
CTNND1-238	ENST00000534647	IFNL3	Q8IZI9	196 aa		13.74	□□□□□ -0.21
CTNND1-238	ENST00000534647	CPXCR1	Q8N123	301 aa		13.74	□□□□□ -0.21
CTNND1-238	ENST00000534647	ANKRD35	Q8N283	1001 aa		13.74	□□□□□ -0.21
CTNND1-238	ENST00000534647	LENG1	Q96BZ8	264 aa	Predicted RBP	13.74	□□□□□ -0.21
CTNND1-238	ENST00000534647	CEP95	Q96GE4	821 aa		13.74	□□□□□ -0.21
CTNND1-238	ENST00000534647	GLT1D1	Q96MS3	346 aa		13.74	□□□□□ -0.21
CTNND1-238	ENST00000534647	SPC25	Q9HBM1	224 aa		13.74	□□□□□ -0.21
CTNND1-238	ENST00000534647	RAVER2	Q9HCJ3	691 aa	Known RBP	13.74	□□□□□ -0.21
CTNND1-238	ENST00000534647	CTDP1	Q9Y5B0	961 aa	Predicted RBP	13.74	□□□□□ -0.21
CTNND1-238	ENST00000534647	MYH7	P12883	1935 aa		13.74	□□□□□ -0.21
CTNND1-238	ENST00000534647	PLXNA1	Q9UIW2	1896 aa		13.74	□□□□□ -0.21
CTNND1-238	ENST00000534647	ASGR1	P07306	291 aa		13.73	□□□□□ -0.21
CTNND1-238	ENST00000534647	PRR29	P0C7W0	189 aa		13.73	□□□□□ -0.21
CTNND1-238	ENST00000534647	BMP3	P12645	472 aa		13.73	□□□□□ -0.21
CTNND1-238	ENST00000534647	TDO2	P48775	406 aa		13.73	□□□□□ -0.21
CTNND1-238	ENST00000534647	CCDC144B	Q3MJ40	725 aa		13.73	□□□□□ -0.21
CTNND1-238	ENST00000534647	PPP4R3B	Q5MIZ7	849 aa		13.73	□□□□□ -0.21
CTNND1-238	ENST00000534647	RASIP1	Q5U651	963 aa		13.73	□□□□□ -0.21
CTNND1-238	ENST00000534647	ARMCX2	Q7L311	632 aa		13.73	□□□□□ -0.21
CTNND1-238	ENST00000534647	MYLIP	Q8WY64	445 aa		13.73	□□□□□ -0.21
CTNND1-238	ENST00000534647	KIFC2	Q96AC6	838 aa		13.73	□□□□□ -0.21
CTNND1-238	ENST00000534647	GMCL1	Q96IK5	515 aa		13.73	□□□□□ -0.21
CTNND1-238	ENST00000534647	NACAP1	Q9BZK3	213 aa		13.73	□□□□□ -0.21
CTNND1-238	ENST00000534647	KATNBL1	Q9H079	304 aa		13.73	□□□□□ -0.21
CTNND1-238	ENST00000534647	ZHX1	Q9UKY1	873 aa	Predicted RBP	13.73	□□□□□ -0.21
CTNND1-238	ENST00000534647	TTC41P	Q6P2S7	1318 aa		13.72	□□□□□ -0.21
CTNND1-238	ENST00000534647		A0A0U1RQG5	324 aa	Predicted RBP	13.72	□□□□□ -0.21
CTNND1-238	ENST00000534647	MYADML2	A6NDP7	307 aa		13.72	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms