RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 GAS2L1Q99501 681 aaPredicted RBP9.68□□□□□ -0.86
NEDD8-207ENST00000533242 LMBRD1Q9NUN5 540 aa9.68□□□□□ -0.86
NEDD8-207ENST00000533242 TBX21Q9UL17 535 aa9.68□□□□□ -0.86
NEDD8-207ENST00000533242 MROH7Q68CQ1 1323 aa9.68□□□□□ -0.86
NEDD8-207ENST00000533242 ZNF532Q9HCE3 1301 aa9.68□□□□□ -0.86
NEDD8-207ENST00000533242 SYNRGQ9UMZ2 1314 aa9.68□□□□□ -0.86
NEDD8-207ENST00000533242 RASIP1Q5U651 963 aa9.68□□□□□ -0.86
NEDD8-207ENST00000533242 MFSD5Q6N075 450 aa9.68□□□□□ -0.86
NEDD8-207ENST00000533242 SAMD1Q6SPF0 538 aaPredicted RBP9.68□□□□□ -0.86
NEDD8-207ENST00000533242 RASEFQ8IZ41 740 aa9.68□□□□□ -0.86
NEDD8-207ENST00000533242 REPS2Q8NFH8 660 aa9.68□□□□□ -0.86
NEDD8-207ENST00000533242 SDR42E1Q8WUS8 393 aa9.68□□□□□ -0.86
NEDD8-207ENST00000533242 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.68□□□□□ -0.86
NEDD8-207ENST00000533242 ATP8A2Q9NTI2 1148 aa9.68□□□□□ -0.86
NEDD8-207ENST00000533242 FAM184BQ9ULE4 1060 aa9.68□□□□□ -0.86
NEDD8-207ENST00000533242 PPP1R9AQ9ULJ8 1098 aa9.68□□□□□ -0.86
NEDD8-207ENST00000533242 SYNGAP1Q96PV0 1343 aa9.68□□□□□ -0.86
NEDD8-207ENST00000533242 VWA5AO00534 786 aa9.67□□□□□ -0.86
NEDD8-207ENST00000533242 SGSM2O43147 1006 aa9.67□□□□□ -0.86
NEDD8-207ENST00000533242 EIF5BO60841 1220 aaKnown RBP9.67□□□□□ -0.86
NEDD8-207ENST00000533242 CST5P28325 142 aaPredicted RBP9.67□□□□□ -0.86
NEDD8-207ENST00000533242 MRE11P49959 708 aa9.67□□□□□ -0.86
NEDD8-207ENST00000533242 NUCB2P80303 420 aa9.67□□□□□ -0.86
NEDD8-207ENST00000533242 CCSAPQ6IQ19 270 aaPredicted RBP9.67□□□□□ -0.86
NEDD8-207ENST00000533242 LARP6Q9BRS8 491 aaKnown RBP9.67□□□□□ -0.86
NEDD8-207ENST00000533242 GOPCQ9HD26 462 aa9.67□□□□□ -0.86
NEDD8-207ENST00000533242 ZNF214Q9UL59 606 aaPredicted RBP9.67□□□□□ -0.86
NEDD8-207ENST00000533242 DDX49Q9Y6V7 483 aaKnown RBP9.67□□□□□ -0.86
NEDD8-207ENST00000533242 ELP1O95163 1332 aa9.67□□□□□ -0.86
NEDD8-207ENST00000533242 MCM3APO60318 1980 aa9.67□□□□□ -0.86
NEDD8-207ENST00000533242 MYH4Q9Y623 1939 aa9.67□□□□□ -0.86
NEDD8-207ENST00000533242 DUSP11O75319 330 aaKnown RBP9.67□□□□□ -0.86
NEDD8-207ENST00000533242 EEF2P13639 858 aaKnown RBP9.67□□□□□ -0.86
NEDD8-207ENST00000533242 HSPA4P34932 840 aa9.67□□□□□ -0.86
NEDD8-207ENST00000533242 CDK8P49336 464 aa9.67□□□□□ -0.86
NEDD8-207ENST00000533242 CDK7P50613 346 aa9.67□□□□□ -0.86
NEDD8-207ENST00000533242 COL9A3Q14050 684 aaPredicted RBP9.67□□□□□ -0.86
NEDD8-207ENST00000533242 KCNA10Q16322 511 aa9.67□□□□□ -0.86
NEDD8-207ENST00000533242 KLHL40Q2TBA0 621 aa9.67□□□□□ -0.86
NEDD8-207ENST00000533242 HSP90AB4PQ58FF6 505 aa9.67□□□□□ -0.86
NEDD8-207ENST00000533242 TMEM240Q5SV17 173 aa9.67□□□□□ -0.86
NEDD8-207ENST00000533242 MAMDC4Q6UXC1 1216 aa9.67□□□□□ -0.86
NEDD8-207ENST00000533242 GPT2Q8TD30 523 aa9.67□□□□□ -0.86
NEDD8-207ENST00000533242 LENG1Q96BZ8 264 aaPredicted RBP9.67□□□□□ -0.86
NEDD8-207ENST00000533242 IL17RAQ96F46 866 aa9.67□□□□□ -0.86
NEDD8-207ENST00000533242 LSG1Q9H089 658 aaKnown RBP9.67□□□□□ -0.86
NEDD8-207ENST00000533242 KANSL2Q9H9L4 492 aa9.67□□□□□ -0.86
NEDD8-207ENST00000533242 FBXO28Q9NVF7 368 aa9.67□□□□□ -0.86
NEDD8-207ENST00000533242 THEGQ9P2T0 379 aa9.67□□□□□ -0.86
NEDD8-207ENST00000533242 CPA1P15085 419 aa9.66□□□□□ -0.86
NEDD8-207ENST00000533242 CUL4AQ13619 759 aa9.66□□□□□ -0.86
NEDD8-207ENST00000533242 C12orf60Q5U649 245 aa9.66□□□□□ -0.86
NEDD8-207ENST00000533242 CWC27Q6UX04 472 aaKnown RBP9.66□□□□□ -0.86
NEDD8-207ENST00000533242 C16orf86Q6ZW13 317 aa9.66□□□□□ -0.86
NEDD8-207ENST00000533242 ZNF467Q7Z7K2 595 aaPredicted RBP9.66□□□□□ -0.86
NEDD8-207ENST00000533242 AMOTL1Q8IY63 956 aa9.66□□□□□ -0.86
NEDD8-207ENST00000533242 TMEM199Q8N511 208 aa9.66□□□□□ -0.86
NEDD8-207ENST00000533242 PCSK9Q8NBP7 692 aaKnown RBP9.66□□□□□ -0.86
NEDD8-207ENST00000533242 PBX4Q9BYU1 374 aa9.66□□□□□ -0.86
NEDD8-207ENST00000533242 UPF3AQ9H1J1 476 aaKnown RBP9.66□□□□□ -0.86
NEDD8-207ENST00000533242 ARMT1Q9H993 441 aa9.66□□□□□ -0.86
NEDD8-207ENST00000533242 GOLIM4O00461 696 aa9.66□□□□□ -0.86
NEDD8-207ENST00000533242 PRPF40AO75400 957 aaKnown RBP9.66□□□□□ -0.86
NEDD8-207ENST00000533242 SNAI1O95863 264 aaPredicted RBP9.66□□□□□ -0.86
NEDD8-207ENST00000533242 ANAPC15P60006 121 aa9.66□□□□□ -0.86
NEDD8-207ENST00000533242 RAB30Q15771 203 aa9.66□□□□□ -0.86
NEDD8-207ENST00000533242 SKOR2Q2VWA4 1001 aaPredicted RBP9.66□□□□□ -0.86
NEDD8-207ENST00000533242 CAVIN1Q6NZI2 390 aaKnown RBP9.66□□□□□ -0.86
NEDD8-207ENST00000533242 PSRC1Q6PGN9 363 aaPredicted RBP9.66□□□□□ -0.86
NEDD8-207ENST00000533242 CCDC129Q6ZRS4 1044 aa9.66□□□□□ -0.86
NEDD8-207ENST00000533242 C16orf59Q7L2K0 433 aa9.66□□□□□ -0.86
NEDD8-207ENST00000533242 GLT1D1Q96MS3 346 aa9.66□□□□□ -0.86
NEDD8-207ENST00000533242 ASB2Q96Q27 587 aa9.66□□□□□ -0.86
NEDD8-207ENST00000533242 RAD50Q92878 1312 aa9.66□□□□□ -0.86
NEDD8-207ENST00000533242 DNAJC25-GNG10A0A024R161 153 aa9.65□□□□□ -0.86
NEDD8-207ENST00000533242 A0A0U1RQG5 324 aaPredicted RBP9.65□□□□□ -0.86
NEDD8-207ENST00000533242 TLR3O15455 904 aaKnown RBP9.65□□□□□ -0.86
NEDD8-207ENST00000533242 PRKAB2O43741 272 aa9.65□□□□□ -0.86
NEDD8-207ENST00000533242 PBX2P40425 430 aa9.65□□□□□ -0.86
NEDD8-207ENST00000533242 PTH1RQ03431 593 aa9.65□□□□□ -0.86
NEDD8-207ENST00000533242 FAM83BQ5T0W9 1011 aa9.65□□□□□ -0.86
NEDD8-207ENST00000533242 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.65□□□□□ -0.86
NEDD8-207ENST00000533242 TEX13BQ9BXU2 312 aa9.65□□□□□ -0.86
NEDD8-207ENST00000533242 PRDM12Q9H4Q4 367 aa9.65□□□□□ -0.86
NEDD8-207ENST00000533242 SPC25Q9HBM1 224 aa9.65□□□□□ -0.86
NEDD8-207ENST00000533242 MSRAQ9UJ68 235 aa9.65□□□□□ -0.86
NEDD8-207ENST00000533242 ZHX1Q9UKY1 873 aaPredicted RBP9.65□□□□□ -0.86
NEDD8-207ENST00000533242 SNX14Q9Y5W7 946 aa9.65□□□□□ -0.86
NEDD8-207ENST00000533242 LRRC37A2A6NM11 1700 aa9.65□□□□□ -0.87
NEDD8-207ENST00000533242 MYADML2A6NDP7 307 aa9.65□□□□□ -0.87
NEDD8-207ENST00000533242 ARVCFO00192 962 aa9.65□□□□□ -0.87
NEDD8-207ENST00000533242 MBD4O95243 580 aa9.65□□□□□ -0.87
NEDD8-207ENST00000533242 ADD2P35612 726 aa9.65□□□□□ -0.87
NEDD8-207ENST00000533242 GJA9P57773 515 aa9.65□□□□□ -0.87
NEDD8-207ENST00000533242 MRPS5P82675 430 aaKnown RBP9.65□□□□□ -0.87
NEDD8-207ENST00000533242 ADAMTS19Q8TE59 1207 aa9.65□□□□□ -0.87
NEDD8-207ENST00000533242 HERVK_113Q902F9 699 aa9.65□□□□□ -0.87
NEDD8-207ENST00000533242 DDX11Q96FC9 970 aa9.65□□□□□ -0.87
NEDD8-207ENST00000533242 DNAJC2Q99543 621 aaKnown RBP9.65□□□□□ -0.87
NEDD8-207ENST00000533242 SLF1Q9BQI6 1058 aa9.65□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms