RNA–Protein interactions for RNA: ENST00000533078.5

CMTM1-216, Transcript of CKLF like MARVEL transmembrane domain containing 1, humanhuman

TSL 1 (best)

Gene CMTM1, Length 565 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM1-216ENST00000533078 CCSAPQ6IQ19 270 aaPredicted RBP13.79□□□□□ -0.2
CMTM1-216ENST00000533078 ARMCX2Q7L311 632 aa13.79□□□□□ -0.2
CMTM1-216ENST00000533078 STK11IPQ8N1F8 1099 aa13.79□□□□□ -0.2
CMTM1-216ENST00000533078 PBX4Q9BYU1 374 aa13.79□□□□□ -0.2
CMTM1-216ENST00000533078 PPP1R12CQ9BZL4 782 aa13.79□□□□□ -0.2
CMTM1-216ENST00000533078 LRRCC1Q9C099 1032 aa13.79□□□□□ -0.2
CMTM1-216ENST00000533078 RAVER2Q9HCJ3 691 aaKnown RBP13.79□□□□□ -0.2
CMTM1-216ENST00000533078 CLIP2Q9UDT6 1046 aa13.79□□□□□ -0.2
CMTM1-216ENST00000533078 MYADML2A6NDP7 307 aa13.78□□□□□ -0.2
CMTM1-216ENST00000533078 CABYRO75952 493 aa13.78□□□□□ -0.2
CMTM1-216ENST00000533078 APPP05067 770 aa13.78□□□□□ -0.2
CMTM1-216ENST00000533078 SLC3A2P08195 630 aaKnown RBP13.78□□□□□ -0.2
CMTM1-216ENST00000533078 CSF2RAP15509 400 aa13.78□□□□□ -0.2
CMTM1-216ENST00000533078 GNAT2P19087 354 aa13.78□□□□□ -0.2
CMTM1-216ENST00000533078 RASA1P20936 1047 aa13.78□□□□□ -0.2
CMTM1-216ENST00000533078 IGFBP4P22692 258 aa13.78□□□□□ -0.2
CMTM1-216ENST00000533078 CDK7P50613 346 aa13.78□□□□□ -0.2
CMTM1-216ENST00000533078 USP38Q8NB14 1042 aa13.78□□□□□ -0.2
CMTM1-216ENST00000533078 SEZ6LQ9BYH1 1024 aa13.78□□□□□ -0.2
CMTM1-216ENST00000533078 PUS7LQ9H0K6 701 aaKnown RBP13.78□□□□□ -0.2
CMTM1-216ENST00000533078 AP5M1Q9H0R1 490 aa13.78□□□□□ -0.2
CMTM1-216ENST00000533078 UPF3AQ9H1J1 476 aaKnown RBP13.78□□□□□ -0.2
CMTM1-216ENST00000533078 PRDM12Q9H4Q4 367 aa13.78□□□□□ -0.2
CMTM1-216ENST00000533078 SLC28A3Q9HAS3 691 aa13.78□□□□□ -0.2
CMTM1-216ENST00000533078 SLC38A10Q9HBR0 1119 aa13.78□□□□□ -0.2
CMTM1-216ENST00000533078 IL23AQ9NPF7 189 aa13.78□□□□□ -0.2
CMTM1-216ENST00000533078 SYNPO2Q9UMS6 1093 aa13.78□□□□□ -0.2
CMTM1-216ENST00000533078 RIPK3Q9Y572 518 aa13.78□□□□□ -0.2
CMTM1-216ENST00000533078 ASB14A6NK59 587 aa13.77□□□□□ -0.21
CMTM1-216ENST00000533078 SMIM22K7EJ46 135 aa13.77□□□□□ -0.21
CMTM1-216ENST00000533078 TTLL1O95922 423 aa13.77□□□□□ -0.21
CMTM1-216ENST00000533078 MRPS5P82675 430 aaKnown RBP13.77□□□□□ -0.21
CMTM1-216ENST00000533078 TNFAIP2Q03169 654 aa13.77□□□□□ -0.21
CMTM1-216ENST00000533078 PPP4R3BQ5MIZ7 849 aa13.77□□□□□ -0.21
CMTM1-216ENST00000533078 ZNF365Q70YC5 407 aa13.77□□□□□ -0.21
CMTM1-216ENST00000533078 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.77□□□□□ -0.21
CMTM1-216ENST00000533078 FAM126BQ8IXS8 530 aa13.77□□□□□ -0.21
CMTM1-216ENST00000533078 CCDC144CPQ8IYA2 1237 aa13.77□□□□□ -0.21
CMTM1-216ENST00000533078 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.77□□□□□ -0.21
CMTM1-216ENST00000533078 NACAP1Q9BZK3 213 aa13.77□□□□□ -0.21
CMTM1-216ENST00000533078 HIPK3Q9H422 1215 aa13.77□□□□□ -0.21
CMTM1-216ENST00000533078 ACAD9Q9H845 621 aa13.77□□□□□ -0.21
CMTM1-216ENST00000533078 HOMER2Q9NSB8 354 aa13.77□□□□□ -0.21
CMTM1-216ENST00000533078 COG6Q9Y2V7 657 aa13.77□□□□□ -0.21
CMTM1-216ENST00000533078 MYH4Q9Y623 1939 aa13.77□□□□□ -0.21
CMTM1-216ENST00000533078 XIRP2A4UGR9 3374 aa13.77□□□□□ -0.21
CMTM1-216ENST00000533078 FGBP02675 491 aa13.76□□□□□ -0.21
CMTM1-216ENST00000533078 ZFYP08048 801 aaPredicted RBP13.76□□□□□ -0.21
CMTM1-216ENST00000533078 ACRP10323 421 aa13.76□□□□□ -0.21
CMTM1-216ENST00000533078 BMP3P12645 472 aa13.76□□□□□ -0.21
CMTM1-216ENST00000533078 PBX2P40425 430 aa13.76□□□□□ -0.21
CMTM1-216ENST00000533078 STAT2P52630 851 aa13.76□□□□□ -0.21
CMTM1-216ENST00000533078 PDE4BQ07343 736 aa13.76□□□□□ -0.21
CMTM1-216ENST00000533078 RPUSD2Q8IZ73 545 aaKnown RBP13.76□□□□□ -0.21
CMTM1-216ENST00000533078 GMCL1P1Q8NEA9 526 aa13.76□□□□□ -0.21
CMTM1-216ENST00000533078 CHURC1Q8WUH1 139 aa13.76□□□□□ -0.21
CMTM1-216ENST00000533078 ASB2Q96Q27 587 aa13.76□□□□□ -0.21
CMTM1-216ENST00000533078 STRBPQ96SI9 672 aaKnown RBP13.76□□□□□ -0.21
CMTM1-216ENST00000533078 ZBTB40Q9NUA8 1239 aa13.76□□□□□ -0.21
CMTM1-216ENST00000533078 MCM3APO60318 1980 aa13.76□□□□□ -0.21
CMTM1-216ENST00000533078 CHD9Q3L8U1 2897 aa13.76□□□□□ -0.21
CMTM1-216ENST00000533078 GREB1LQ9C091 1923 aaPredicted RBP13.75□□□□□ -0.21
CMTM1-216ENST00000533078 GRXCR1A8MXD5 290 aa13.75□□□□□ -0.21
CMTM1-216ENST00000533078 TSPY3P0CV98 308 aa13.75□□□□□ -0.21
CMTM1-216ENST00000533078 TSPY8P0CW00 308 aa13.75□□□□□ -0.21
CMTM1-216ENST00000533078 COL9A1P20849 921 aa13.75□□□□□ -0.21
CMTM1-216ENST00000533078 CYP2C18P33260 490 aa13.75□□□□□ -0.21
CMTM1-216ENST00000533078 TKFCQ3LXA3 575 aa13.75□□□□□ -0.21
CMTM1-216ENST00000533078 RASIP1Q5U651 963 aa13.75□□□□□ -0.21
CMTM1-216ENST00000533078 SLFN13Q68D06 897 aa13.75□□□□□ -0.21
CMTM1-216ENST00000533078 TLK2Q86UE8 772 aa13.75□□□□□ -0.21
CMTM1-216ENST00000533078 FAM160B2Q86V87 743 aa13.75□□□□□ -0.21
CMTM1-216ENST00000533078 LRRC47Q8N1G4 583 aaKnown RBP13.75□□□□□ -0.21
CMTM1-216ENST00000533078 HERVK_113Q902F9 699 aa13.75□□□□□ -0.21
CMTM1-216ENST00000533078 APPBP2Q92624 585 aa13.75□□□□□ -0.21
CMTM1-216ENST00000533078 MKL1Q969V6 931 aa13.75□□□□□ -0.21
CMTM1-216ENST00000533078 CEP95Q96GE4 821 aa13.75□□□□□ -0.21
CMTM1-216ENST00000533078 ECHDC1Q9NTX5 307 aa13.75□□□□□ -0.21
CMTM1-216ENST00000533078 MTMR4Q9NYA4 1195 aa13.75□□□□□ -0.21
CMTM1-216ENST00000533078 GSG1L2A8MUP6 293 aa13.74□□□□□ -0.21
CMTM1-216ENST00000533078 TMEM232C9JQI7 657 aa13.74□□□□□ -0.21
CMTM1-216ENST00000533078 GPAA1O43292 621 aa13.74□□□□□ -0.21
CMTM1-216ENST00000533078 CHGBP05060 677 aa13.74□□□□□ -0.21
CMTM1-216ENST00000533078 ITGA7Q13683 1181 aa13.74□□□□□ -0.21
CMTM1-216ENST00000533078 CCDC85BQ15834 202 aaPredicted RBP13.74□□□□□ -0.21
CMTM1-216ENST00000533078 FSCN1Q16658 493 aaKnown RBP13.74□□□□□ -0.21
CMTM1-216ENST00000533078 AAK1Q2M2I8 961 aa13.74□□□□□ -0.21
CMTM1-216ENST00000533078 CXCL17Q6UXB2 119 aa13.74□□□□□ -0.21
CMTM1-216ENST00000533078 C16orf59Q7L2K0 433 aa13.74□□□□□ -0.21
CMTM1-216ENST00000533078 KBTBD3Q8NAB2 608 aa13.74□□□□□ -0.21
CMTM1-216ENST00000533078 UHRF1Q96T88 793 aaPredicted RBP13.74□□□□□ -0.21
CMTM1-216ENST00000533078 RNF146Q9NTX7 359 aa13.74□□□□□ -0.21
CMTM1-216ENST00000533078 SLC4A7Q9Y6M7 1214 aa13.74□□□□□ -0.21
CMTM1-216ENST00000533078 CHD7Q9P2D1 2997 aa13.74□□□□□ -0.21
CMTM1-216ENST00000533078 NCOR1O75376 2440 aa13.73□□□□□ -0.21
CMTM1-216ENST00000533078 ZBBXA8MT70 800 aa13.73□□□□□ -0.21
CMTM1-216ENST00000533078 PRDM1O75626 825 aa13.73□□□□□ -0.21
CMTM1-216ENST00000533078 CD4P01730 458 aa13.73□□□□□ -0.21
CMTM1-216ENST00000533078 SLC1A4P43007 532 aa13.73□□□□□ -0.21
CMTM1-216ENST00000533078 BEX3Q00994 111 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms