RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 MYCNP04198 464 aaPredicted RBP15.66■□□□□ 0.1
VPS28-211ENST00000530790 RARBP10826 455 aa15.66■□□□□ 0.1
VPS28-211ENST00000530790 ZNF467Q7Z7K2 595 aaPredicted RBP15.66■□□□□ 0.1
VPS28-211ENST00000530790 IQCA1Q86XH1 822 aa15.66■□□□□ 0.1
VPS28-211ENST00000530790 RUFY2Q8WXA3 655 aa15.66■□□□□ 0.1
VPS28-211ENST00000530790 AGBL1Q96MI9 1066 aa15.66■□□□□ 0.1
VPS28-211ENST00000530790 SENP6Q9GZR1 1112 aaPredicted RBP15.66■□□□□ 0.1
VPS28-211ENST00000530790 ZMYND8Q9ULU4 1186 aaPredicted RBP15.66■□□□□ 0.1
VPS28-211ENST00000530790 FRMPD2Q68DX3 1309 aaPredicted RBP15.66■□□□□ 0.1
VPS28-211ENST00000530790 KDM4AO75164 1064 aa15.65■□□□□ 0.1
VPS28-211ENST00000530790 PDHBP11177 359 aa15.65■□□□□ 0.1
VPS28-211ENST00000530790 ALAS1P13196 640 aa15.65■□□□□ 0.1
VPS28-211ENST00000530790 AKR1A1P14550 325 aa15.65■□□□□ 0.1
VPS28-211ENST00000530790 SNAP25P60880 206 aa15.65■□□□□ 0.1
VPS28-211ENST00000530790 LRRC26Q2I0M4 334 aa15.65■□□□□ 0.1
VPS28-211ENST00000530790 CCDC178Q5BJE1 867 aa15.65■□□□□ 0.1
VPS28-211ENST00000530790 GJC2Q5T442 439 aaPredicted RBP15.65■□□□□ 0.1
VPS28-211ENST00000530790 SYDE2Q5VT97 1194 aa15.65■□□□□ 0.1
VPS28-211ENST00000530790 MAMDC4Q6UXC1 1216 aa15.65■□□□□ 0.1
VPS28-211ENST00000530790 ZKSCAN3Q9BRR0 538 aa15.65■□□□□ 0.1
VPS28-211ENST00000530790 IL25Q9H293 177 aa15.65■□□□□ 0.1
VPS28-211ENST00000530790 RBM27Q9P2N5 1060 aaKnown RBP15.65■□□□□ 0.1
VPS28-211ENST00000530790 ZHX1Q9UKY1 873 aaPredicted RBP15.65■□□□□ 0.1
VPS28-211ENST00000530790 CCPG1Q9ULG6 757 aa15.65■□□□□ 0.1
VPS28-211ENST00000530790 B4E1Z4 1266 aa15.64■□□□□ 0.09
VPS28-211ENST00000530790 ICAM1P05362 532 aa15.64■□□□□ 0.09
VPS28-211ENST00000530790 ZNF865P0CJ78 1059 aaPredicted RBP15.64■□□□□ 0.09
VPS28-211ENST00000530790 TAL1P17542 331 aaPredicted RBP15.64■□□□□ 0.09
VPS28-211ENST00000530790 SLC16A2P36021 539 aa15.64■□□□□ 0.09
VPS28-211ENST00000530790 BTNL9Q6UXG8 535 aa15.64■□□□□ 0.09
VPS28-211ENST00000530790 DGKHQ86XP1 1220 aa15.64■□□□□ 0.09
VPS28-211ENST00000530790 TRERF1Q96PN7 1200 aa15.64■□□□□ 0.09
VPS28-211ENST00000530790 KRT23Q9C075 422 aa15.64■□□□□ 0.09
VPS28-211ENST00000530790 RANBP17Q9H2T7 1088 aaKnown RBP15.64■□□□□ 0.09
VPS28-211ENST00000530790 CNNM2Q9H8M5 875 aa15.64■□□□□ 0.09
VPS28-211ENST00000530790 GPCPD1Q9NPB8 672 aa15.64■□□□□ 0.09
VPS28-211ENST00000530790 A1CFQ9NQ94 594 aaKnown RBP15.64■□□□□ 0.09
VPS28-211ENST00000530790 XPNPEP3Q9NQH7 507 aa15.64■□□□□ 0.09
VPS28-211ENST00000530790 ZNFX1Q9P2E3 1918 aaKnown RBP15.64■□□□□ 0.09
VPS28-211ENST00000530790 POTEB2H3BUK9 544 aa15.63■□□□□ 0.09
VPS28-211ENST00000530790 SYN1P17600 705 aa15.63■□□□□ 0.09
VPS28-211ENST00000530790 CHMLP26374 656 aa15.63■□□□□ 0.09
VPS28-211ENST00000530790 ZNF543Q08ER8 600 aa15.63■□□□□ 0.09
VPS28-211ENST00000530790 LRRC41Q15345 812 aa15.63■□□□□ 0.09
VPS28-211ENST00000530790 TTBK2Q6IQ55 1244 aa15.63■□□□□ 0.09
VPS28-211ENST00000530790 FGD4Q96M96 766 aa15.63■□□□□ 0.09
VPS28-211ENST00000530790 KAT14Q9H8E8 782 aa15.63■□□□□ 0.09
VPS28-211ENST00000530790 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.63■□□□□ 0.09
VPS28-211ENST00000530790 SNAI1O95863 264 aaPredicted RBP15.62■□□□□ 0.09
VPS28-211ENST00000530790 SNHG28P0DPA3 235 aa15.62■□□□□ 0.09
VPS28-211ENST00000530790 FXR1P51114 621 aaKnown RBP eCLIP15.62■□□□□ 0.09
VPS28-211ENST00000530790 ATN1P54259 1190 aaPredicted RBP15.62■□□□□ 0.09
VPS28-211ENST00000530790 GPATCH4Q5T3I0 446 aaKnown RBP15.62■□□□□ 0.09
VPS28-211ENST00000530790 ARMCX2Q7L311 632 aa15.62■□□□□ 0.09
VPS28-211ENST00000530790 RNF180Q86T96 592 aa15.62■□□□□ 0.09
VPS28-211ENST00000530790 PNMA1Q8ND90 353 aa15.62■□□□□ 0.09
VPS28-211ENST00000530790 LENG1Q96BZ8 264 aaPredicted RBP15.62■□□□□ 0.09
VPS28-211ENST00000530790 ZSCAN10Q96SZ4 725 aaPredicted RBP15.62■□□□□ 0.09
VPS28-211ENST00000530790 UBAC1Q9BSL1 405 aa15.62■□□□□ 0.09
VPS28-211ENST00000530790 PRO3102Q9H379 93 aa15.62■□□□□ 0.09
VPS28-211ENST00000530790 PNMA2Q9UL42 364 aa15.62■□□□□ 0.09
VPS28-211ENST00000530790 FAM184BQ9ULE4 1060 aa15.62■□□□□ 0.09
VPS28-211ENST00000530790 TNKSO95271 1327 aa15.62■□□□□ 0.09
VPS28-211ENST00000530790 RANBP2P49792 3224 aaKnown RBP15.61■□□□□ 0.09
VPS28-211ENST00000530790 A0A1W2PPC1 479 aa15.61■□□□□ 0.09
VPS28-211ENST00000530790 PGK1P00558 417 aa15.61■□□□□ 0.09
VPS28-211ENST00000530790 CNTN2Q02246 1040 aa15.61■□□□□ 0.09
VPS28-211ENST00000530790 ACVR2BQ13705 512 aa15.61■□□□□ 0.09
VPS28-211ENST00000530790 MUM1L1Q5H9M0 696 aa15.61■□□□□ 0.09
VPS28-211ENST00000530790 NSMFQ6X4W1 530 aa15.61■□□□□ 0.09
VPS28-211ENST00000530790 CCDC144CPQ8IYA2 1237 aa15.61■□□□□ 0.09
VPS28-211ENST00000530790 FAM133AQ8N9E0 248 aa15.61■□□□□ 0.09
VPS28-211ENST00000530790 ABHD16BQ9H3Z7 469 aa15.61■□□□□ 0.09
VPS28-211ENST00000530790 GOLGA8HP0CJ92 632 aa15.6■□□□□ 0.09
VPS28-211ENST00000530790 ADCYAP1R1P41586 468 aa15.6■□□□□ 0.09
VPS28-211ENST00000530790 RTP1P59025 263 aa15.6■□□□□ 0.09
VPS28-211ENST00000530790 TRDNQ13061 729 aa15.6■□□□□ 0.09
VPS28-211ENST00000530790 ENAHQ8N8S7 591 aaPredicted RBP15.6■□□□□ 0.09
VPS28-211ENST00000530790 CYP39A1Q9NYL5 469 aa15.6■□□□□ 0.09
VPS28-211ENST00000530790 ZSWIM5Q9P217 1185 aa15.6■□□□□ 0.09
VPS28-211ENST00000530790 U3KPZ7 1027 aaPredicted RBP15.6■□□□□ 0.09
VPS28-211ENST00000530790 SYNRGQ9UMZ2 1314 aa15.6■□□□□ 0.09
VPS28-211ENST00000530790 ASB14A6NK59 587 aa15.59■□□□□ 0.09
VPS28-211ENST00000530790 SGSM2O43147 1006 aa15.59■□□□□ 0.09
VPS28-211ENST00000530790 MAGEA10P43363 369 aaPredicted RBP15.59■□□□□ 0.09
VPS28-211ENST00000530790 ANKS1AQ92625 1134 aa15.59■□□□□ 0.09
VPS28-211ENST00000530790 FERMT2Q96AC1 680 aa15.59■□□□□ 0.09
VPS28-211ENST00000530790 GDF15Q99988 308 aa15.59■□□□□ 0.09
VPS28-211ENST00000530790 PRKAG2Q9UGJ0 569 aa15.59■□□□□ 0.09
VPS28-211ENST00000530790 PHF24Q9UPV7 400 aa15.59■□□□□ 0.09
VPS28-211ENST00000530790 ATP11BQ9Y2G3 1177 aa15.59■□□□□ 0.09
VPS28-211ENST00000530790 WDR19Q8NEZ3 1342 aa15.59■□□□□ 0.09
VPS28-211ENST00000530790 LRRC37A2A6NM11 1700 aa15.59■□□□□ 0.09
VPS28-211ENST00000530790 DNAH12Q6ZR08 3092 aa15.58■□□□□ 0.08
VPS28-211ENST00000530790 PTPDC1A2A3K4 754 aa15.58■□□□□ 0.08
VPS28-211ENST00000530790 SOWAHBA6NEL2 793 aa15.58■□□□□ 0.08
VPS28-211ENST00000530790 NFIBO00712 420 aa15.58■□□□□ 0.08
VPS28-211ENST00000530790 ADAMTS4O75173 837 aa15.58■□□□□ 0.08
VPS28-211ENST00000530790 DUSP11O75319 330 aaKnown RBP15.58■□□□□ 0.08
VPS28-211ENST00000530790 CYP21A2P08686 494 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms