RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 ECM29Q5VYK3 1845 aa15.89■□□□□ 0.13
USP48-213ENST00000529637 PRDX5P30044 214 aa15.89■□□□□ 0.13
USP48-213ENST00000529637 GNGT1P63211 74 aa15.89■□□□□ 0.13
USP48-213ENST00000529637 MECOMQ03112 1051 aa15.89■□□□□ 0.13
USP48-213ENST00000529637 C2orf54Q08AI8 447 aa15.89■□□□□ 0.13
USP48-213ENST00000529637 RBM28Q9NW13 759 aaKnown RBP15.89■□□□□ 0.13
USP48-213ENST00000529637 MCM9Q9NXL9 1143 aa15.89■□□□□ 0.13
USP48-213ENST00000529637 MYO1AQ9UBC5 1043 aa15.89■□□□□ 0.13
USP48-213ENST00000529637 DUSP10Q9Y6W6 482 aa15.89■□□□□ 0.13
USP48-213ENST00000529637 DDX60Q8IY21 1712 aaKnown RBP15.89■□□□□ 0.13
USP48-213ENST00000529637 GOLGA6BA6NDN3 693 aa15.89■□□□□ 0.13
USP48-213ENST00000529637 MYO1FO00160 1098 aa15.89■□□□□ 0.13
USP48-213ENST00000529637 PRPF3O43395 683 aaKnown RBP15.89■□□□□ 0.13
USP48-213ENST00000529637 HERVK_113P62684 666 aa15.89■□□□□ 0.13
USP48-213ENST00000529637 PPP2R5BQ15173 497 aa15.89■□□□□ 0.13
USP48-213ENST00000529637 CCDC51Q96ER9 411 aa15.89■□□□□ 0.13
USP48-213ENST00000529637 PHF20Q9BVI0 1012 aa15.89■□□□□ 0.13
USP48-213ENST00000529637 CAPS2Q9BXY5 557 aa15.89■□□□□ 0.13
USP48-213ENST00000529637 BSDC1Q9NW68 430 aaPredicted RBP15.89■□□□□ 0.13
USP48-213ENST00000529637 ANKRD36CQ5JPF3 1778 aa15.88■□□□□ 0.13
USP48-213ENST00000529637 RCCD1A6NED2 376 aa15.88■□□□□ 0.13
USP48-213ENST00000529637 TROAPQ12815 778 aa15.88■□□□□ 0.13
USP48-213ENST00000529637 NBPF5PQ86XG9 351 aaPredicted RBP15.88■□□□□ 0.13
USP48-213ENST00000529637 DZIP1Q86YF9 867 aaKnown RBP15.88■□□□□ 0.13
USP48-213ENST00000529637 CTAGE1Q96RT6 745 aa15.88■□□□□ 0.13
USP48-213ENST00000529637 MTA3Q9BTC8 594 aa15.88■□□□□ 0.13
USP48-213ENST00000529637 CHD4Q14839 1912 aa15.88■□□□□ 0.13
USP48-213ENST00000529637 MYH2Q9UKX2 1941 aa15.88■□□□□ 0.13
USP48-213ENST00000529637 PSMD14O00487 310 aa15.88■□□□□ 0.13
USP48-213ENST00000529637 CALM1P0DP23 149 aa15.88■□□□□ 0.13
USP48-213ENST00000529637 CALM2P0DP24 149 aa15.88■□□□□ 0.13
USP48-213ENST00000529637 CALM3P0DP25 149 aa15.88■□□□□ 0.13
USP48-213ENST00000529637 MAP9Q49MG5 647 aa15.88■□□□□ 0.13
USP48-213ENST00000529637 CCDC122Q5T0U0 273 aa15.88■□□□□ 0.13
USP48-213ENST00000529637 SRBD1Q8N5C6 995 aaKnown RBP15.88■□□□□ 0.13
USP48-213ENST00000529637 CDCA7Q9BWT1 371 aaPredicted RBP15.88■□□□□ 0.13
USP48-213ENST00000529637 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.88■□□□□ 0.13
USP48-213ENST00000529637 HIBADHP31937 336 aaKnown RBP15.87■□□□□ 0.13
USP48-213ENST00000529637 MAP2K2P36507 400 aa15.87■□□□□ 0.13
USP48-213ENST00000529637 RCAN1P53805 252 aa15.87■□□□□ 0.13
USP48-213ENST00000529637 RPS8P62241 208 aaKnown RBP15.87■□□□□ 0.13
USP48-213ENST00000529637 TMTC3Q6ZXV5 915 aa15.87■□□□□ 0.13
USP48-213ENST00000529637 JAKMIP2Q96AA8 810 aa15.87■□□□□ 0.13
USP48-213ENST00000529637 NLRP3Q96P20 1036 aa15.87■□□□□ 0.13
USP48-213ENST00000529637 BRIP1Q9BX63 1249 aa15.87■□□□□ 0.13
USP48-213ENST00000529637 LACRTQ9GZZ8 138 aa15.87■□□□□ 0.13
USP48-213ENST00000529637 ANAPC4Q9UJX5 808 aa15.87■□□□□ 0.13
USP48-213ENST00000529637 ITIH6Q6UXX5 1313 aa15.87■□□□□ 0.13
USP48-213ENST00000529637 TTC26A0AVF1 554 aa15.87■□□□□ 0.13
USP48-213ENST00000529637 INPP5BP32019 993 aa15.87■□□□□ 0.13
USP48-213ENST00000529637 COPB1P53618 953 aaKnown RBP15.87■□□□□ 0.13
USP48-213ENST00000529637 RRAGBQ5VZM2 374 aa15.87■□□□□ 0.13
USP48-213ENST00000529637 ANKRD20A12PQ8NF67 263 aa15.87■□□□□ 0.13
USP48-213ENST00000529637 FERMT2Q96AC1 680 aa15.87■□□□□ 0.13
USP48-213ENST00000529637 SRP68Q9UHB9 627 aaKnown RBP15.87■□□□□ 0.13
USP48-213ENST00000529637 SPATA31A1Q5TZJ5 1347 aa15.87■□□□□ 0.13
USP48-213ENST00000529637 EIF3HO15372 352 aaKnown RBP eCLIP15.87■□□□□ 0.131e-5■□□□□ 9.1
USP48-213ENST00000529637 VEGFAP15692 232 aaPredicted RBP15.87■□□□□ 0.13
USP48-213ENST00000529637 TBC1D9BQ66K14 1250 aa15.87■□□□□ 0.13
USP48-213ENST00000529637 SND1Q7KZF4 910 aaKnown RBP eCLIP15.87■□□□□ 0.13
USP48-213ENST00000529637 ZNF384Q8TF68 577 aa15.87■□□□□ 0.13
USP48-213ENST00000529637 GPKOWQ92917 476 aaPredicted RBP eCLIP15.87■□□□□ 0.131e-6■■□□□ 12
USP48-213ENST00000529637 ARL8AQ96BM9 186 aa15.87■□□□□ 0.13
USP48-213ENST00000529637 CAPN7Q9Y6W3 813 aa15.87■□□□□ 0.13
USP48-213ENST00000529637 ZNF804BA4D1E1 1349 aa15.86■□□□□ 0.13
USP48-213ENST00000529637 SETDB2Q96T68 719 aa15.86■□□□□ 0.13
USP48-213ENST00000529637 DCP1AQ9NPI6 582 aaPredicted RBP15.86■□□□□ 0.13
USP48-213ENST00000529637 DMGDHQ9UI17 866 aaKnown RBP15.86■□□□□ 0.13
USP48-213ENST00000529637 BAZ2AQ9UIF9 1905 aaKnown RBP15.86■□□□□ 0.13
USP48-213ENST00000529637 BMP15O95972 392 aa15.86■□□□□ 0.13
USP48-213ENST00000529637 PPFIA1Q13136 1202 aa15.86■□□□□ 0.13
USP48-213ENST00000529637 PAPD7Q5XG87 772 aaKnown RBP15.86■□□□□ 0.13
USP48-213ENST00000529637 SH3RF1Q7Z6J0 888 aa15.86■□□□□ 0.13
USP48-213ENST00000529637 RASGRP4Q8TDF6 673 aa15.86■□□□□ 0.13
USP48-213ENST00000529637 NSUN4Q96CB9 384 aaKnown RBP15.86■□□□□ 0.13
USP48-213ENST00000529637 JPH2Q9BR39 696 aaPredicted RBP15.86■□□□□ 0.13
USP48-213ENST00000529637 SCG2P13521 617 aa15.85■□□□□ 0.13
USP48-213ENST00000529637 SLC7A5Q01650 507 aa15.85■□□□□ 0.13
USP48-213ENST00000529637 UBXN1Q04323 297 aa15.85■□□□□ 0.13
USP48-213ENST00000529637 FUT2Q10981 343 aa15.85■□□□□ 0.13
USP48-213ENST00000529637 PDCLQ13371 301 aa15.85■□□□□ 0.13
USP48-213ENST00000529637 FAM98CQ17RN3 349 aaKnown RBP15.85■□□□□ 0.13
USP48-213ENST00000529637 WDR59Q6PJI9 974 aa15.85■□□□□ 0.13
USP48-213ENST00000529637 CAGE1Q8TC20 777 aa15.85■□□□□ 0.13
USP48-213ENST00000529637 PLIN2Q99541 437 aa15.85■□□□□ 0.13
USP48-213ENST00000529637 USP17L8P0C7I0 530 aa15.85■□□□□ 0.13
USP48-213ENST00000529637 LINC00116Q8NCU8 138 aa15.85■□□□□ 0.13
USP48-213ENST00000529637 MKNK2Q9HBH9 465 aa15.85■□□□□ 0.13
USP48-213ENST00000529637 TARSL2A2RTX5 802 aaKnown RBP15.85■□□□□ 0.13
USP48-213ENST00000529637 SH2D3CQ8N5H7 860 aa15.85■□□□□ 0.13
USP48-213ENST00000529637 AENQ8WTP8 325 aaKnown RBP15.85■□□□□ 0.13
USP48-213ENST00000529637 EEF2KMTQ96G04 330 aa15.85■□□□□ 0.13
USP48-213ENST00000529637 FAM107BQ9H098 131 aa15.85■□□□□ 0.13
USP48-213ENST00000529637 SMARCAL1Q9NZC9 954 aa15.85■□□□□ 0.13
USP48-213ENST00000529637 LIMA1Q9UHB6 759 aaKnown RBP15.85■□□□□ 0.13
USP48-213ENST00000529637 NID2Q14112 1375 aa15.84■□□□□ 0.13
USP48-213ENST00000529637 COL1A1P02452 1464 aaPredicted RBP15.84■□□□□ 0.13
USP48-213ENST00000529637 LRRC10BA6NIK2 292 aa15.84■□□□□ 0.13
USP48-213ENST00000529637 DDAH1O94760 285 aa15.84■□□□□ 0.13
USP48-213ENST00000529637 TTMPQ5BVD1 217 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms