RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 CDK8P49336 464 aa8.71□□□□□ -1.02
CD44-228ENST00000528455 CTCFP49711 727 aaPredicted RBP8.71□□□□□ -1.02
CD44-228ENST00000528455 NEK4P51957 841 aa8.71□□□□□ -1.02
CD44-228ENST00000528455 HUNKP57058 714 aa8.71□□□□□ -1.02
CD44-228ENST00000528455 MAP7D1Q3KQU3 841 aa8.71□□□□□ -1.02
CD44-228ENST00000528455 ADCK5Q3MIX3 580 aa8.71□□□□□ -1.02
CD44-228ENST00000528455 SUPT20HL1Q3ZLR7 823 aa8.71□□□□□ -1.02
CD44-228ENST00000528455 CCDC178Q5BJE1 867 aa8.71□□□□□ -1.02
CD44-228ENST00000528455 TATDN1Q6P1N9 297 aa8.71□□□□□ -1.02
CD44-228ENST00000528455 BLOC1S2Q6QNY1 142 aa8.71□□□□□ -1.02
CD44-228ENST00000528455 DLK2Q6UY11 383 aa8.71□□□□□ -1.02
CD44-228ENST00000528455 C16orf86Q6ZW13 317 aa8.71□□□□□ -1.02
CD44-228ENST00000528455 RALYLQ86SE5 291 aaKnown RBP8.71□□□□□ -1.02
CD44-228ENST00000528455 ESR2Q92731 530 aa8.71□□□□□ -1.02
CD44-228ENST00000528455 JAKMIP1Q96N16 626 aaKnown RBP8.71□□□□□ -1.02
CD44-228ENST00000528455 VEZTQ9HBM0 779 aa8.71□□□□□ -1.02
CD44-228ENST00000528455 GBA2Q9HCG7 927 aaPredicted RBP8.71□□□□□ -1.02
CD44-228ENST00000528455 TCP11L1Q9NUJ3 509 aa8.71□□□□□ -1.02
CD44-228ENST00000528455 SAP30BPQ9UHR5 308 aaKnown RBP8.71□□□□□ -1.02
CD44-228ENST00000528455 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.71□□□□□ -1.02
CD44-228ENST00000528455 WDR19Q8NEZ3 1342 aa8.71□□□□□ -1.02
CD44-228ENST00000528455 CYP2D7A0A087X1C5 515 aa8.7□□□□□ -1.02
CD44-228ENST00000528455 DGAT1O75907 488 aa8.7□□□□□ -1.02
CD44-228ENST00000528455 CYP2D6P10635 497 aa8.7□□□□□ -1.02
CD44-228ENST00000528455 TIMP2P16035 220 aa8.7□□□□□ -1.02
CD44-228ENST00000528455 CASTP20810 708 aaKnown RBP8.7□□□□□ -1.02
CD44-228ENST00000528455 RPS6KB1P23443 525 aa8.7□□□□□ -1.02
CD44-228ENST00000528455 MCM2P49736 904 aa8.7□□□□□ -1.02
CD44-228ENST00000528455 WDR4P57081 412 aaKnown RBP8.7□□□□□ -1.02
CD44-228ENST00000528455 ANKRD1Q15327 319 aa8.7□□□□□ -1.02
CD44-228ENST00000528455 STOX1Q6ZVD7 989 aa8.7□□□□□ -1.02
CD44-228ENST00000528455 TNS4Q8IZW8 715 aa8.7□□□□□ -1.02
CD44-228ENST00000528455 SNX21Q969T3 373 aa8.7□□□□□ -1.02
CD44-228ENST00000528455 ITPKCQ96DU7 683 aa8.7□□□□□ -1.02
CD44-228ENST00000528455 CCDC97Q96F63 343 aaPredicted RBP8.7□□□□□ -1.02
CD44-228ENST00000528455 CDCA5Q96FF9 252 aa8.7□□□□□ -1.02
CD44-228ENST00000528455 TMEM87BQ96K49 555 aa8.7□□□□□ -1.02
CD44-228ENST00000528455 TEPSINQ96N21 525 aa8.7□□□□□ -1.02
CD44-228ENST00000528455 TTC14Q96N46 770 aa8.7□□□□□ -1.02
CD44-228ENST00000528455 CSRNP1Q96S65 589 aa8.7□□□□□ -1.02
CD44-228ENST00000528455 INCENPQ9NQS7 918 aa8.7□□□□□ -1.02
CD44-228ENST00000528455 PRDM10Q9NQV6 1147 aa8.7□□□□□ -1.02
CD44-228ENST00000528455 DOLKQ9UPQ8 538 aa8.7□□□□□ -1.02
CD44-228ENST00000528455 MAFBQ9Y5Q3 323 aaPredicted RBP8.7□□□□□ -1.02
CD44-228ENST00000528455 TAF6LQ9Y6J9 622 aa8.7□□□□□ -1.02
CD44-228ENST00000528455 ASTN2O75129 1339 aaPredicted RBP8.7□□□□□ -1.02
CD44-228ENST00000528455 LAMA4Q16363 1823 aa8.7□□□□□ -1.02
CD44-228ENST00000528455 ROBO3Q96MS0 1386 aa8.7□□□□□ -1.02
CD44-228ENST00000528455 NAV1Q8NEY1 1877 aa8.69□□□□□ -1.02
CD44-228ENST00000528455 USP17L5A8MUK1 530 aa8.69□□□□□ -1.02
CD44-228ENST00000528455 LILRA1O75019 489 aa8.69□□□□□ -1.02
CD44-228ENST00000528455 AOC2O75106 756 aa8.69□□□□□ -1.02
CD44-228ENST00000528455 NF2P35240 595 aa8.69□□□□□ -1.02
CD44-228ENST00000528455 FKBP1BP68106 108 aa8.69□□□□□ -1.02
CD44-228ENST00000528455 NOGQ13253 232 aa8.69□□□□□ -1.02
CD44-228ENST00000528455 CERKLQ49MI3 558 aaPredicted RBP8.69□□□□□ -1.02
CD44-228ENST00000528455 RGMBQ6NW40 437 aa8.69□□□□□ -1.02
CD44-228ENST00000528455 IQCA1Q86XH1 822 aa8.69□□□□□ -1.02
CD44-228ENST00000528455 TBC1D10CQ8IV04 446 aa8.69□□□□□ -1.02
CD44-228ENST00000528455 MB21D2Q8IYB1 491 aaPredicted RBP8.69□□□□□ -1.02
CD44-228ENST00000528455 CRACR2BQ8N4Y2 399 aaPredicted RBP8.69□□□□□ -1.02
CD44-228ENST00000528455 IGDCC4Q8TDY8 1250 aa8.69□□□□□ -1.02
CD44-228ENST00000528455 ANKS1AQ92625 1134 aa8.69□□□□□ -1.02
CD44-228ENST00000528455 DYNLL2Q96FJ2 89 aa8.69□□□□□ -1.02
CD44-228ENST00000528455 AGXT2Q9BYV1 514 aa8.69□□□□□ -1.02
CD44-228ENST00000528455 TMEM39BQ9GZU3 492 aa8.69□□□□□ -1.02
CD44-228ENST00000528455 ZFAND3Q9H8U3 227 aa8.69□□□□□ -1.02
CD44-228ENST00000528455 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.69□□□□□ -1.02
CD44-228ENST00000528455 GINM1Q9NU53 330 aa8.69□□□□□ -1.02
CD44-228ENST00000528455 PDRG1Q9NUG6 133 aa8.69□□□□□ -1.02
CD44-228ENST00000528455 PGPEP1Q9NXJ5 209 aa8.69□□□□□ -1.02
CD44-228ENST00000528455 TACC3Q9Y6A5 838 aa8.69□□□□□ -1.02
CD44-228ENST00000528455 ERICH2A1L162 156 aa8.68□□□□□ -1.02
CD44-228ENST00000528455 B4E1Z4 1266 aa8.68□□□□□ -1.02
CD44-228ENST00000528455 SMIM22K7EJ46 135 aa8.68□□□□□ -1.02
CD44-228ENST00000528455 CA12O43570 354 aa8.68□□□□□ -1.02
CD44-228ENST00000528455 RANBP6O60518 1105 aaKnown RBP8.68□□□□□ -1.02
CD44-228ENST00000528455 ZIC2O95409 532 aaPredicted RBP8.68□□□□□ -1.02
CD44-228ENST00000528455 RASA1P20936 1047 aa8.68□□□□□ -1.02
CD44-228ENST00000528455 SHMT1P34896 483 aa8.68□□□□□ -1.02
CD44-228ENST00000528455 LIFRP42702 1097 aa8.68□□□□□ -1.02
CD44-228ENST00000528455 SCTRP47872 440 aa8.68□□□□□ -1.02
CD44-228ENST00000528455 ZNF157P51786 506 aaPredicted RBP8.68□□□□□ -1.02
CD44-228ENST00000528455 LBX1P52954 281 aa8.68□□□□□ -1.02
CD44-228ENST00000528455 EVCP57679 992 aa8.68□□□□□ -1.02
CD44-228ENST00000528455 ERVK-9P63128 1117 aa8.68□□□□□ -1.02
CD44-228ENST00000528455 TFAP4Q01664 338 aa8.68□□□□□ -1.02
CD44-228ENST00000528455 SART3Q15020 963 aaKnown RBP8.68□□□□□ -1.02
CD44-228ENST00000528455 PKDCCQ504Y2 493 aa8.68□□□□□ -1.02
CD44-228ENST00000528455 DCAF15Q66K64 600 aa8.68□□□□□ -1.02
CD44-228ENST00000528455 DGKHQ86XP1 1220 aa8.68□□□□□ -1.02
CD44-228ENST00000528455 DEPDC4Q8N2C3 294 aa8.68□□□□□ -1.02
CD44-228ENST00000528455 NEDD1Q8NHV4 660 aa8.68□□□□□ -1.02
CD44-228ENST00000528455 CHMP4CQ96CF2 233 aa8.68□□□□□ -1.02
CD44-228ENST00000528455 CYLDQ9NQC7 956 aa8.68□□□□□ -1.02
CD44-228ENST00000528455 ZNF112Q9UJU3 913 aa8.68□□□□□ -1.02
CD44-228ENST00000528455 UNCXA6NJT0 531 aa8.67□□□□□ -1.02
CD44-228ENST00000528455 TSPY2A6NKD2 308 aa8.67□□□□□ -1.02
CD44-228ENST00000528455 PRC1O43663 620 aa8.67□□□□□ -1.02
CD44-228ENST00000528455 LZTS3O60299 673 aaPredicted RBP8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms