RNA–Protein interactions for RNA: ENST00000527887.1

CAPN1-212, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 348 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-212ENST00000527887 PHF24Q9UPV7 400 aa16.76■□□□□ 0.27
CAPN1-212ENST00000527887 TOP1P11387 765 aaKnown RBP16.75■□□□□ 0.27
CAPN1-212ENST00000527887 SLC4A3P48751 1232 aa16.75■□□□□ 0.27
CAPN1-212ENST00000527887 RTP1P59025 263 aa16.75■□□□□ 0.27
CAPN1-212ENST00000527887 MFSD6Q6ZSS7 791 aa16.75■□□□□ 0.27
CAPN1-212ENST00000527887 ZNF589Q86UQ0 364 aaPredicted RBP16.75■□□□□ 0.27
CAPN1-212ENST00000527887 INCENPQ9NQS7 918 aa16.75■□□□□ 0.27
CAPN1-212ENST00000527887 TOMM22Q9NS69 142 aa16.75■□□□□ 0.27
CAPN1-212ENST00000527887 PNMA2Q9UL42 364 aa16.75■□□□□ 0.27
CAPN1-212ENST00000527887 SNAI1O95863 264 aaPredicted RBP16.74■□□□□ 0.27
CAPN1-212ENST00000527887 MYCNP04198 464 aaPredicted RBP16.74■□□□□ 0.27
CAPN1-212ENST00000527887 TAL1P17542 331 aaPredicted RBP16.74■□□□□ 0.27
CAPN1-212ENST00000527887 ADCYAP1R1P41586 468 aa16.74■□□□□ 0.27
CAPN1-212ENST00000527887 ACVR2BQ13705 512 aa16.74■□□□□ 0.27
CAPN1-212ENST00000527887 AKNAD1Q5T1N1 836 aa16.74■□□□□ 0.27
CAPN1-212ENST00000527887 BTNL9Q6UXG8 535 aa16.74■□□□□ 0.27
CAPN1-212ENST00000527887 PRR12Q9ULL5 1215 aa16.74■□□□□ 0.27
CAPN1-212ENST00000527887 LAMA3Q16787 3333 aa16.74■□□□□ 0.27
CAPN1-212ENST00000527887 ZNF536O15090 1300 aa16.73■□□□□ 0.27
CAPN1-212ENST00000527887 ALPK3Q96L96 1907 aa16.73■□□□□ 0.27
CAPN1-212ENST00000527887 POTEB2H3BUK9 544 aa16.73■□□□□ 0.27
CAPN1-212ENST00000527887 NMT2O60551 498 aa16.73■□□□□ 0.27
CAPN1-212ENST00000527887 DUSP11O75319 330 aaKnown RBP16.73■□□□□ 0.27
CAPN1-212ENST00000527887 CCDC178Q5BJE1 867 aa16.73■□□□□ 0.27
CAPN1-212ENST00000527887 RRP12Q5JTH9 1297 aaKnown RBP16.73■□□□□ 0.27
CAPN1-212ENST00000527887 KCTD1Q719H9 257 aa16.73■□□□□ 0.27
CAPN1-212ENST00000527887 TRERF1Q96PN7 1200 aa16.73■□□□□ 0.27
CAPN1-212ENST00000527887 SPC25Q9HBM1 224 aa16.73■□□□□ 0.27
CAPN1-212ENST00000527887 DIAPH3Q9NSV4 1193 aa16.73■□□□□ 0.27
CAPN1-212ENST00000527887 RNF146Q9NTX7 359 aa16.73■□□□□ 0.27
CAPN1-212ENST00000527887 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.73■□□□□ 0.27
CAPN1-212ENST00000527887 ATP11BQ9Y2G3 1177 aa16.73■□□□□ 0.27
CAPN1-212ENST00000527887 TACC3Q9Y6A5 838 aa16.73■□□□□ 0.27
CAPN1-212ENST00000527887 MOXD2PA6NHM9 499 aa16.72■□□□□ 0.27
CAPN1-212ENST00000527887 ASB14A6NK59 587 aa16.72■□□□□ 0.27
CAPN1-212ENST00000527887 ZNF213O14771 459 aa16.72■□□□□ 0.27
CAPN1-212ENST00000527887 ADAMTS4O75173 837 aa16.72■□□□□ 0.27
CAPN1-212ENST00000527887 PGK1P00558 417 aa16.72■□□□□ 0.27
CAPN1-212ENST00000527887 FAM133AQ8N9E0 248 aa16.72■□□□□ 0.27
CAPN1-212ENST00000527887 NUP133Q8WUM0 1156 aa16.72■□□□□ 0.27
CAPN1-212ENST00000527887 ESR2Q92731 530 aa16.72■□□□□ 0.27
CAPN1-212ENST00000527887 AGBL1Q96MI9 1066 aa16.72■□□□□ 0.27
CAPN1-212ENST00000527887 TMEM47Q9BQJ4 181 aa16.72■□□□□ 0.27
CAPN1-212ENST00000527887 A1CFQ9NQ94 594 aaKnown RBP16.72■□□□□ 0.27
CAPN1-212ENST00000527887 ZHX1Q9UKY1 873 aaPredicted RBP16.72■□□□□ 0.27
CAPN1-212ENST00000527887 COL11A1P12107 1806 aaPredicted RBP16.71■□□□□ 0.27
CAPN1-212ENST00000527887 ICAM1P05362 532 aa16.71■□□□□ 0.27
CAPN1-212ENST00000527887 ALAS1P13196 640 aa16.71■□□□□ 0.27
CAPN1-212ENST00000527887 CST5P28325 142 aaPredicted RBP16.71■□□□□ 0.27
CAPN1-212ENST00000527887 MDM2Q00987 491 aaPredicted RBP16.71■□□□□ 0.27
CAPN1-212ENST00000527887 CCDC96Q2M329 555 aa16.71■□□□□ 0.27
CAPN1-212ENST00000527887 ARMCX2Q7L311 632 aa16.71■□□□□ 0.27
CAPN1-212ENST00000527887 DGKHQ86XP1 1220 aa16.71■□□□□ 0.27
CAPN1-212ENST00000527887 PCSK9Q8NBP7 692 aaKnown RBP16.71■□□□□ 0.27
CAPN1-212ENST00000527887 KLHDC9Q8NEP7 349 aa16.71■□□□□ 0.27
CAPN1-212ENST00000527887 FERMT2Q96AC1 680 aa16.71■□□□□ 0.27
CAPN1-212ENST00000527887 RANBP17Q9H2T7 1088 aaKnown RBP16.71■□□□□ 0.27
CAPN1-212ENST00000527887 HOMER2Q9NSB8 354 aa16.71■□□□□ 0.27
CAPN1-212ENST00000527887 CTNNA3Q9UI47 895 aa16.71■□□□□ 0.27
CAPN1-212ENST00000527887 MYH4Q9Y623 1939 aa16.7■□□□□ 0.26
CAPN1-212ENST00000527887 LOC102724159A0A0B4J2E5 919 aa16.7■□□□□ 0.26
CAPN1-212ENST00000527887 HAND2P61296 217 aa16.7■□□□□ 0.26
CAPN1-212ENST00000527887 NKX3-2P78367 333 aa16.7■□□□□ 0.26
CAPN1-212ENST00000527887 PWP2Q15269 919 aaKnown RBP16.7■□□□□ 0.26
CAPN1-212ENST00000527887 TRIM60Q495X7 471 aa16.7■□□□□ 0.26
CAPN1-212ENST00000527887 SYDE2Q5VT97 1194 aa16.7■□□□□ 0.26
CAPN1-212ENST00000527887 CWC27Q6UX04 472 aaKnown RBP16.7■□□□□ 0.26
CAPN1-212ENST00000527887 CCDC144CPQ8IYA2 1237 aa16.7■□□□□ 0.26
CAPN1-212ENST00000527887 FGD4Q96M96 766 aa16.7■□□□□ 0.26
CAPN1-212ENST00000527887 TOX2Q96NM4 488 aa16.7■□□□□ 0.26
CAPN1-212ENST00000527887 DSCC1Q9BVC3 393 aa16.7■□□□□ 0.26
CAPN1-212ENST00000527887 CCPG1Q9ULG6 757 aa16.7■□□□□ 0.26
CAPN1-212ENST00000527887 FRMPD3Q5JV73 1810 aa16.7■□□□□ 0.26
CAPN1-212ENST00000527887 ZNFX1Q9P2E3 1918 aaKnown RBP16.69■□□□□ 0.26
CAPN1-212ENST00000527887 A0A1W2PQ45 241 aaPredicted RBP16.69■□□□□ 0.26
CAPN1-212ENST00000527887 A0A1W2PQY0 241 aa16.69■□□□□ 0.26
CAPN1-212ENST00000527887 SOX1O00570 391 aaPredicted RBP16.69■□□□□ 0.26
CAPN1-212ENST00000527887 ACLYP53396 1101 aa16.69■□□□□ 0.26
CAPN1-212ENST00000527887 GJA9P57773 515 aa16.69■□□□□ 0.26
CAPN1-212ENST00000527887 CNTN2Q02246 1040 aa16.69■□□□□ 0.26
CAPN1-212ENST00000527887 CCDC144BQ3MJ40 725 aa16.69■□□□□ 0.26
CAPN1-212ENST00000527887 GPATCH4Q5T3I0 446 aaKnown RBP16.69■□□□□ 0.26
CAPN1-212ENST00000527887 CCSAPQ6IQ19 270 aaPredicted RBP16.69■□□□□ 0.26
CAPN1-212ENST00000527887 CCDC174Q6PII3 467 aa16.69■□□□□ 0.26
CAPN1-212ENST00000527887 IQCA1Q86XH1 822 aa16.69■□□□□ 0.26
CAPN1-212ENST00000527887 LRCH3Q96II8 777 aa16.69■□□□□ 0.26
CAPN1-212ENST00000527887 CYP39A1Q9NYL5 469 aa16.69■□□□□ 0.26
CAPN1-212ENST00000527887 ELP1O95163 1332 aa16.69■□□□□ 0.26
CAPN1-212ENST00000527887 SYNRGQ9UMZ2 1314 aa16.69■□□□□ 0.26
CAPN1-212ENST00000527887 SNHG28P0DPA3 235 aa16.68■□□□□ 0.26
CAPN1-212ENST00000527887 PDHBP11177 359 aa16.68■□□□□ 0.26
CAPN1-212ENST00000527887 TLE2Q04725 743 aa16.68■□□□□ 0.26
CAPN1-212ENST00000527887 KCNA10Q16322 511 aa16.68■□□□□ 0.26
CAPN1-212ENST00000527887 IMMTQ16891 758 aaKnown RBP16.68■□□□□ 0.26
CAPN1-212ENST00000527887 ANKRD33Q7Z3H0 272 aa16.68■□□□□ 0.26
CAPN1-212ENST00000527887 GLT1D1Q96MS3 346 aa16.68■□□□□ 0.26
CAPN1-212ENST00000527887 MAF1Q9H063 256 aa16.68■□□□□ 0.26
CAPN1-212ENST00000527887 KATNBL1Q9H079 304 aa16.68■□□□□ 0.26
CAPN1-212ENST00000527887 UPF3AQ9H1J1 476 aaKnown RBP16.68■□□□□ 0.26
CAPN1-212ENST00000527887 STARD7Q9NQZ5 370 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms