RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 CTDP1Q9Y5B0 961 aaPredicted RBP11.94□□□□□ -0.5
VPS28-204ENST00000526054 MCM3APO60318 1980 aa11.93□□□□□ -0.5
VPS28-204ENST00000526054 TSPY2A6NKD2 308 aa11.93□□□□□ -0.5
VPS28-204ENST00000526054 RANBP6O60518 1105 aaKnown RBP11.93□□□□□ -0.5
VPS28-204ENST00000526054 PGK1P00558 417 aa11.93□□□□□ -0.5
VPS28-204ENST00000526054 TAL1P17542 331 aaPredicted RBP11.93□□□□□ -0.5
VPS28-204ENST00000526054 RRP12Q5JTH9 1297 aaKnown RBP11.93□□□□□ -0.5
VPS28-204ENST00000526054 PPP4R3BQ5MIZ7 849 aa11.93□□□□□ -0.5
VPS28-204ENST00000526054 C1orf53Q5VUE5 145 aa11.93□□□□□ -0.5
VPS28-204ENST00000526054 TBC1D10CQ8IV04 446 aa11.93□□□□□ -0.5
VPS28-204ENST00000526054 PRPF38AQ8NAV1 312 aaKnown RBP11.93□□□□□ -0.5
VPS28-204ENST00000526054 LENG1Q96BZ8 264 aaPredicted RBP11.93□□□□□ -0.5
VPS28-204ENST00000526054 LSG1Q9H089 658 aaKnown RBP11.93□□□□□ -0.5
VPS28-204ENST00000526054 CLIP2Q9UDT6 1046 aa11.93□□□□□ -0.5
VPS28-204ENST00000526054 EYSQ5T1H1 3165 aa11.93□□□□□ -0.5
VPS28-204ENST00000526054 SYNGAP1Q96PV0 1343 aa11.92□□□□□ -0.5
VPS28-204ENST00000526054 UNC80Q8N2C7 3258 aa11.92□□□□□ -0.5
VPS28-204ENST00000526054 IGKV6D-41A0A0C4DH26 115 aa11.92□□□□□ -0.5
VPS28-204ENST00000526054 A0A1W2PQ45 241 aaPredicted RBP11.92□□□□□ -0.5
VPS28-204ENST00000526054 A0A1W2PQY0 241 aa11.92□□□□□ -0.5
VPS28-204ENST00000526054 DLL1O00548 723 aa11.92□□□□□ -0.5
VPS28-204ENST00000526054 ZBED4O75132 1171 aa11.92□□□□□ -0.5
VPS28-204ENST00000526054 TTLL1O95922 423 aa11.92□□□□□ -0.5
VPS28-204ENST00000526054 FGRP09769 529 aa11.92□□□□□ -0.5
VPS28-204ENST00000526054 ZNF865P0CJ78 1059 aaPredicted RBP11.92□□□□□ -0.5
VPS28-204ENST00000526054 SLC4A3P48751 1232 aa11.92□□□□□ -0.5
VPS28-204ENST00000526054 TFAP4Q01664 338 aa11.92□□□□□ -0.5
VPS28-204ENST00000526054 ZNF697Q5TEC3 545 aa11.92□□□□□ -0.5
VPS28-204ENST00000526054 CPXCR1Q8N123 301 aa11.92□□□□□ -0.5
VPS28-204ENST00000526054 LRRC47Q8N1G4 583 aaKnown RBP11.92□□□□□ -0.5
VPS28-204ENST00000526054 MSL3Q8N5Y2 521 aaKnown RBP11.92□□□□□ -0.5
VPS28-204ENST00000526054 NEDD1Q8NHV4 660 aa11.92□□□□□ -0.5
VPS28-204ENST00000526054 MAP4K1Q92918 833 aa11.92□□□□□ -0.5
VPS28-204ENST00000526054 BADQ92934 168 aa11.92□□□□□ -0.5
VPS28-204ENST00000526054 KIFC2Q96AC6 838 aa11.92□□□□□ -0.5
VPS28-204ENST00000526054 DDX11Q96FC9 970 aa11.92□□□□□ -0.5
VPS28-204ENST00000526054 CEP95Q96GE4 821 aa11.92□□□□□ -0.5
VPS28-204ENST00000526054 ZHX1Q9UKY1 873 aaPredicted RBP11.92□□□□□ -0.5
VPS28-204ENST00000526054 ISY1Q9ULR0 285 aaKnown RBP11.92□□□□□ -0.5
VPS28-204ENST00000526054 SYNPO2Q9UMS6 1093 aa11.92□□□□□ -0.5
VPS28-204ENST00000526054 RIPK3Q9Y572 518 aa11.92□□□□□ -0.5
VPS28-204ENST00000526054 RBM8AQ9Y5S9 174 aaKnown RBP11.92□□□□□ -0.5
VPS28-204ENST00000526054 SYNRGQ9UMZ2 1314 aa11.91□□□□□ -0.5
VPS28-204ENST00000526054 ATP2A1O14983 1001 aa11.91□□□□□ -0.5
VPS28-204ENST00000526054 ADAMTS4O75173 837 aa11.91□□□□□ -0.5
VPS28-204ENST00000526054 REC8O95072 547 aa11.91□□□□□ -0.5
VPS28-204ENST00000526054 CLTBP09497 229 aa11.91□□□□□ -0.5
VPS28-204ENST00000526054 TLE2Q04725 743 aa11.91□□□□□ -0.5
VPS28-204ENST00000526054 SHHQ15465 462 aa11.91□□□□□ -0.5
VPS28-204ENST00000526054 FAM109BQ6ICB4 259 aaPredicted RBP11.91□□□□□ -0.5
VPS28-204ENST00000526054 SH3RF1Q7Z6J0 888 aa11.91□□□□□ -0.5
VPS28-204ENST00000526054 GMCL1P1Q8NEA9 526 aa11.91□□□□□ -0.5
VPS28-204ENST00000526054 ESR2Q92731 530 aa11.91□□□□□ -0.5
VPS28-204ENST00000526054 FAM161BQ96MY7 647 aa11.91□□□□□ -0.5
VPS28-204ENST00000526054 KRT23Q9C075 422 aa11.91□□□□□ -0.5
VPS28-204ENST00000526054 CNNM2Q9H8M5 875 aa11.91□□□□□ -0.5
VPS28-204ENST00000526054 RAVER2Q9HCJ3 691 aaKnown RBP11.91□□□□□ -0.5
VPS28-204ENST00000526054 MTMR4Q9NYA4 1195 aa11.91□□□□□ -0.5
VPS28-204ENST00000526054 FEM1BQ9UK73 627 aa11.91□□□□□ -0.5
VPS28-204ENST00000526054 LRRC37A2A6NM11 1700 aa11.91□□□□□ -0.5
VPS28-204ENST00000526054 NEDD4P46934 1319 aa11.9□□□□□ -0.5
VPS28-204ENST00000526054 DNAJC25-GNG10A0A024R161 153 aa11.9□□□□□ -0.5
VPS28-204ENST00000526054 TRIM43BA6NCK2 446 aa11.9□□□□□ -0.5
VPS28-204ENST00000526054 POTEB2H3BUK9 544 aa11.9□□□□□ -0.5
VPS28-204ENST00000526054 PQBP1O60828 265 aaKnown RBP11.9□□□□□ -0.5
VPS28-204ENST00000526054 CYP21A2P08686 494 aa11.9□□□□□ -0.5
VPS28-204ENST00000526054 OAZ1P54368 228 aa11.9□□□□□ -0.5
VPS28-204ENST00000526054 TRDNQ13061 729 aa11.9□□□□□ -0.5
VPS28-204ENST00000526054 C9orf50Q5SZB4 431 aa11.9□□□□□ -0.5
VPS28-204ENST00000526054 RNF20Q5VTR2 975 aa11.9□□□□□ -0.5
VPS28-204ENST00000526054 MAMDC4Q6UXC1 1216 aa11.9□□□□□ -0.5
VPS28-204ENST00000526054 ZNF467Q7Z7K2 595 aaPredicted RBP11.9□□□□□ -0.5
VPS28-204ENST00000526054 ANKRD35Q8N283 1001 aa11.9□□□□□ -0.5
VPS28-204ENST00000526054 MKL1Q969V6 931 aa11.9□□□□□ -0.5
VPS28-204ENST00000526054 TRIM43Q96BQ3 446 aaPredicted RBP11.9□□□□□ -0.5
VPS28-204ENST00000526054 GUCD1Q96NT3 240 aa11.9□□□□□ -0.5
VPS28-204ENST00000526054 SLC38A10Q9HBR0 1119 aa11.9□□□□□ -0.5
VPS28-204ENST00000526054 INCENPQ9NQS7 918 aa11.9□□□□□ -0.5
VPS28-204ENST00000526054 STARD7Q9NQZ5 370 aa11.9□□□□□ -0.5
VPS28-204ENST00000526054 FBXO40Q9UH90 709 aa11.9□□□□□ -0.5
VPS28-204ENST00000526054 FAM184BQ9ULE4 1060 aa11.9□□□□□ -0.5
VPS28-204ENST00000526054 TACC3Q9Y6A5 838 aa11.9□□□□□ -0.5
VPS28-204ENST00000526054 PRUNE2Q8WUY3 3088 aa11.89□□□□□ -0.51
VPS28-204ENST00000526054 EIF5BO60841 1220 aaKnown RBP11.89□□□□□ -0.51
VPS28-204ENST00000526054 SNAI1O95863 264 aaPredicted RBP11.89□□□□□ -0.51
VPS28-204ENST00000526054 BMP3P12645 472 aa11.89□□□□□ -0.51
VPS28-204ENST00000526054 STAT2P52630 851 aa11.89□□□□□ -0.51
VPS28-204ENST00000526054 ACLYP53396 1101 aa11.89□□□□□ -0.51
VPS28-204ENST00000526054 IKQ13123 557 aaPredicted RBP11.89□□□□□ -0.51
VPS28-204ENST00000526054 CCDC178Q5BJE1 867 aa11.89□□□□□ -0.51
VPS28-204ENST00000526054 SLFN13Q68D06 897 aa11.89□□□□□ -0.51
VPS28-204ENST00000526054 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.89□□□□□ -0.51
VPS28-204ENST00000526054 RALYLQ86SE5 291 aaKnown RBP11.89□□□□□ -0.51
VPS28-204ENST00000526054 CHST13Q8NET6 341 aa11.89□□□□□ -0.51
VPS28-204ENST00000526054 NUP133Q8WUM0 1156 aa11.89□□□□□ -0.51
VPS28-204ENST00000526054 TSEN34Q9BSV6 310 aaKnown RBP11.89□□□□□ -0.51
VPS28-204ENST00000526054 HOMER2Q9NSB8 354 aa11.89□□□□□ -0.51
VPS28-204ENST00000526054 MOXD2PA6NHM9 499 aa11.88□□□□□ -0.51
VPS28-204ENST00000526054 B4E1Z4 1266 aa11.88□□□□□ -0.51
VPS28-204ENST00000526054 KDM4AO75164 1064 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms