RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	SMCHD1	A6NHR9	2005 aa		24.12	■■□□□ 1.45
CD44-222	ENST00000526025	GOLGA8A	A7E2F4	631 aa		24.12	■■□□□ 1.45
CD44-222	ENST00000526025	ICAM1	P05362	532 aa		24.12	■■□□□ 1.45
CD44-222	ENST00000526025	PDIA3	P30101	505 aa	Known RBP	24.12	■■□□□ 1.45
CD44-222	ENST00000526025	METAP2	P50579	478 aa	Known RBP eCLIP	24.12	■■□□□ 1.45
CD44-222	ENST00000526025	CD99L2	Q8TCZ2	262 aa		24.12	■■□□□ 1.45
CD44-222	ENST00000526025	JMJD4	Q9H9V9	463 aa		24.12	■■□□□ 1.45
CD44-222	ENST00000526025	ZNFX1	Q9P2E3	1918 aa	Known RBP	24.12	■■□□□ 1.45
CD44-222	ENST00000526025	PEX10	O60683	326 aa		24.11	■■□□□ 1.45
CD44-222	ENST00000526025	RXRA	P19793	462 aa		24.11	■■□□□ 1.45
CD44-222	ENST00000526025	PSMC4	P43686	418 aa		24.11	■■□□□ 1.45
CD44-222	ENST00000526025	AK2	P54819	239 aa		24.11	■■□□□ 1.45
CD44-222	ENST00000526025	CDC37	Q16543	378 aa	Predicted RBP	24.11	■■□□□ 1.45
CD44-222	ENST00000526025	SNRNP48	Q6IEG0	339 aa	Known RBP	24.11	■■□□□ 1.45
CD44-222	ENST00000526025	TRIM47	Q96LD4	638 aa		24.11	■■□□□ 1.45
CD44-222	ENST00000526025	PORCN	Q9H237	461 aa		24.11	■■□□□ 1.45
CD44-222	ENST00000526025	CYTH3	O43739	400 aa		24.1	■■□□□ 1.45
CD44-222	ENST00000526025	HOXD10	P28358	340 aa		24.1	■■□□□ 1.45
CD44-222	ENST00000526025	CTGF	P29279	349 aa		24.1	■■□□□ 1.45
CD44-222	ENST00000526025	PRMT2	P55345	433 aa		24.1	■■□□□ 1.45
CD44-222	ENST00000526025	PLS1	Q14651	629 aa		24.1	■■□□□ 1.45
CD44-222	ENST00000526025	SLC35G1	Q2M3R5	365 aa		24.1	■■□□□ 1.45
CD44-222	ENST00000526025	CCAR1	Q8IX12	1150 aa	Known RBP	24.1	■■□□□ 1.45
CD44-222	ENST00000526025	CPVL	Q9H3G5	476 aa		24.1	■■□□□ 1.45
CD44-222	ENST00000526025	RAVER2	Q9HCJ3	691 aa	Known RBP	24.1	■■□□□ 1.45
CD44-222	ENST00000526025	FAM217B	Q9NTX9	383 aa	Predicted RBP	24.1	■■□□□ 1.45
CD44-222	ENST00000526025	FBXO40	Q9UH90	709 aa		24.1	■■□□□ 1.45
CD44-222	ENST00000526025	RBBP6	Q7Z6E9	1792 aa	Known RBP	24.09	■■□□□ 1.45
CD44-222	ENST00000526025	TNPO2	O14787	897 aa	Known RBP	24.09	■■□□□ 1.45
CD44-222	ENST00000526025	ZBTB5	O15062	677 aa		24.09	■■□□□ 1.45
CD44-222	ENST00000526025	STRN	O43815	780 aa		24.09	■■□□□ 1.45
CD44-222	ENST00000526025	DHX16	O60231	1041 aa	Known RBP	24.09	■■□□□ 1.45
CD44-222	ENST00000526025	ERCC3	P19447	782 aa		24.09	■■□□□ 1.45
CD44-222	ENST00000526025	TRAF1	Q13077	416 aa		24.09	■■□□□ 1.45
CD44-222	ENST00000526025	GPR142	Q7Z601	462 aa		24.09	■■□□□ 1.45
CD44-222	ENST00000526025	PLEKHH3	Q7Z736	793 aa		24.09	■■□□□ 1.45
CD44-222	ENST00000526025	NBPF11	Q86T75	865 aa		24.09	■■□□□ 1.45
CD44-222	ENST00000526025	CCDC144CP	Q8IYA2	1237 aa		24.09	■■□□□ 1.45
CD44-222	ENST00000526025	ABRA	Q8N0Z2	381 aa		24.09	■■□□□ 1.45
CD44-222	ENST00000526025	CPXCR1	Q8N123	301 aa		24.09	■■□□□ 1.45
CD44-222	ENST00000526025	SRBD1	Q8N5C6	995 aa	Known RBP	24.09	■■□□□ 1.45
CD44-222	ENST00000526025	CHST13	Q8NET6	341 aa		24.09	■■□□□ 1.45
CD44-222	ENST00000526025	COA7	Q96BR5	231 aa		24.09	■■□□□ 1.45
CD44-222	ENST00000526025	ARHGAP39	Q9C0H5	1083 aa		24.09	■■□□□ 1.45
CD44-222	ENST00000526025	MAF1	Q9H063	256 aa		24.09	■■□□□ 1.45
CD44-222	ENST00000526025	EFCC1	Q9HA90	598 aa		24.09	■■□□□ 1.45
CD44-222	ENST00000526025	PLEKHA8P1	O95397	391 aa		24.08	■■□□□ 1.45
CD44-222	ENST00000526025	FMNL1	O95466	1100 aa	Predicted RBP	24.08	■■□□□ 1.45
CD44-222	ENST00000526025	CAP1	Q01518	475 aa		24.08	■■□□□ 1.45
CD44-222	ENST00000526025	CCDC174	Q6PII3	467 aa		24.08	■■□□□ 1.45
CD44-222	ENST00000526025	CTU1	Q7Z7A3	348 aa	Known RBP	24.08	■■□□□ 1.45
CD44-222	ENST00000526025	RAB11FIP4	Q86YS3	637 aa		24.08	■■□□□ 1.45
CD44-222	ENST00000526025	SOCS4	Q8WXH5	440 aa		24.08	■■□□□ 1.45
CD44-222	ENST00000526025	CCPG1	Q9ULG6	757 aa		24.08	■■□□□ 1.45
CD44-222	ENST00000526025	NAP1L2	Q9ULW6	460 aa	Predicted RBP	24.08	■■□□□ 1.45
CD44-222	ENST00000526025	CDC27	P30260	824 aa		24.07	■■□□□ 1.44
CD44-222	ENST00000526025	FUT2	Q10981	343 aa		24.07	■■□□□ 1.44
CD44-222	ENST00000526025	QRICH1	Q2TAL8	776 aa		24.07	■■□□□ 1.44
CD44-222	ENST00000526025	OTOP1	Q7RTM1	612 aa		24.07	■■□□□ 1.44
CD44-222	ENST00000526025	NCAPG2	Q86XI2	1143 aa		24.07	■■□□□ 1.44
CD44-222	ENST00000526025	AGBL1	Q96MI9	1066 aa		24.07	■■□□□ 1.44
CD44-222	ENST00000526025	TPCN1	Q9ULQ1	816 aa		24.07	■■□□□ 1.44
CD44-222	ENST00000526025	PNMA6F	A0A0J9YX94	578 aa		24.06	■■□□□ 1.44
CD44-222	ENST00000526025	SLC15A5	A6NIM6	579 aa		24.06	■■□□□ 1.44
CD44-222	ENST00000526025	ST18	O60284	1047 aa		24.06	■■□□□ 1.44
CD44-222	ENST00000526025	PFKFB2	O60825	505 aa		24.06	■■□□□ 1.44
CD44-222	ENST00000526025	SNAP25	P60880	206 aa		24.06	■■□□□ 1.44
CD44-222	ENST00000526025	GRB14	Q14449	540 aa		24.06	■■□□□ 1.44
CD44-222	ENST00000526025	PKN2	Q16513	984 aa	Known RBP	24.06	■■□□□ 1.44
CD44-222	ENST00000526025	RRP36	Q96EU6	259 aa	Known RBP	24.06	■■□□□ 1.44
CD44-222	ENST00000526025	AMN	Q9BXJ7	453 aa		24.06	■■□□□ 1.44
CD44-222	ENST00000526025	VAT1L	Q9HCJ6	419 aa		24.06	■■□□□ 1.44
CD44-222	ENST00000526025	SRRD	Q9UH36	339 aa		24.06	■■□□□ 1.44
CD44-222	ENST00000526025	RIPK3	Q9Y572	518 aa		24.06	■■□□□ 1.44
CD44-222	ENST00000526025	IVNS1ABP	Q9Y6Y0	642 aa		24.06	■■□□□ 1.44
CD44-222	ENST00000526025	CNTNAP5	Q8WYK1	1306 aa		24.06	■■□□□ 1.44
CD44-222	ENST00000526025	PLXNA1	Q9UIW2	1896 aa		24.05	■■□□□ 1.44
CD44-222	ENST00000526025	PTPRE	P23469	700 aa		24.05	■■□□□ 1.44
CD44-222	ENST00000526025	FBXO11	Q86XK2	927 aa		24.05	■■□□□ 1.44
CD44-222	ENST00000526025	PIGS	Q96S52	555 aa		24.05	■■□□□ 1.44
CD44-222	ENST00000526025	ACAD9	Q9H845	621 aa		24.05	■■□□□ 1.44
CD44-222	ENST00000526025	CWC22	Q9HCG8	908 aa	Known RBP	24.05	■■□□□ 1.44
CD44-222	ENST00000526025	RBM27	Q9P2N5	1060 aa	Known RBP	24.05	■■□□□ 1.44
CD44-222	ENST00000526025	GJD2	Q9UKL4	321 aa		24.05	■■□□□ 1.44
CD44-222	ENST00000526025	LIMCH1	Q9UPQ0	1083 aa		24.05	■■□□□ 1.44
CD44-222	ENST00000526025	TRIM17	Q9Y577	477 aa		24.05	■■□□□ 1.44
CD44-222	ENST00000526025	ABCB11	O95342	1321 aa		24.05	■■□□□ 1.44
CD44-222	ENST00000526025	FCER1A	P12319	257 aa		24.04	■■□□□ 1.44
CD44-222	ENST00000526025	IFNAR1	P17181	557 aa		24.04	■■□□□ 1.44
CD44-222	ENST00000526025	ADD1	P35611	737 aa	Known RBP	24.04	■■□□□ 1.44
CD44-222	ENST00000526025	IRF5	Q13568	498 aa		24.04	■■□□□ 1.44
CD44-222	ENST00000526025	NTRK3	Q16288	839 aa		24.04	■■□□□ 1.44
CD44-222	ENST00000526025	MORN1	Q5T089	497 aa		24.04	■■□□□ 1.44
CD44-222	ENST00000526025	SLK	Q9H2G2	1235 aa	Predicted RBP	24.04	■■□□□ 1.44
CD44-222	ENST00000526025	RNF146	Q9NTX7	359 aa		24.04	■■□□□ 1.44
CD44-222	ENST00000526025	SEC63	Q9UGP8	760 aa	Known RBP	24.04	■■□□□ 1.44
CD44-222	ENST00000526025	ALAS1	P13196	640 aa		24.03	■■□□□ 1.44
CD44-222	ENST00000526025	MCM2	P49736	904 aa		24.03	■■□□□ 1.44
CD44-222	ENST00000526025	USP6NL	Q92738	828 aa		24.03	■■□□□ 1.44
CD44-222	ENST00000526025	ZSCAN31	Q96LW9	406 aa	Predicted RBP	24.03	■■□□□ 1.44

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