RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 ZNF765Q7L2R6 523 aa6.5□□□□□ -1.37
CD44-220ENST00000525688 SHISA5Q8N114 240 aa6.5□□□□□ -1.37
CD44-220ENST00000525688 ZNF655Q8N720 491 aaPredicted RBP6.5□□□□□ -1.37
CD44-220ENST00000525688 KCTD13Q8WZ19 329 aa6.5□□□□□ -1.37
CD44-220ENST00000525688 C1orf159Q96HA4 380 aa6.5□□□□□ -1.37
CD44-220ENST00000525688 DUSP15Q9H1R2 295 aaPredicted RBP6.5□□□□□ -1.37
CD44-220ENST00000525688 A0A087X0B3 334 aa6.49□□□□□ -1.37
CD44-220ENST00000525688 FAM170BA6NMN3 283 aa6.49□□□□□ -1.37
CD44-220ENST00000525688 H0Y8X5 98 aa6.49□□□□□ -1.37
CD44-220ENST00000525688 F13BP05160 661 aa6.49□□□□□ -1.37
CD44-220ENST00000525688 OXCT1P55809 520 aa6.49□□□□□ -1.37
CD44-220ENST00000525688 ANAPC15P60006 121 aa6.49□□□□□ -1.37
CD44-220ENST00000525688 GABREP78334 506 aa6.49□□□□□ -1.37
CD44-220ENST00000525688 CYP4F3Q08477 520 aa6.49□□□□□ -1.37
CD44-220ENST00000525688 NFIAQ12857 509 aa6.49□□□□□ -1.37
CD44-220ENST00000525688 SF1Q15637 639 aaKnown RBP6.49□□□□□ -1.37
CD44-220ENST00000525688 CPSF6Q16630 551 aaKnown RBP eCLIP6.49□□□□□ -1.37
CD44-220ENST00000525688 C21orf62-AS1Q17RA5 79 aa6.49□□□□□ -1.37
CD44-220ENST00000525688 SLC35F1Q5T1Q4 408 aa6.49□□□□□ -1.37
CD44-220ENST00000525688 TICAM2Q86XR7 235 aa6.49□□□□□ -1.37
CD44-220ENST00000525688 GSTCDQ8NEC7 633 aa6.49□□□□□ -1.37
CD44-220ENST00000525688 MFSD14AQ96MC6 490 aa6.49□□□□□ -1.37
CD44-220ENST00000525688 ZDHHC15Q96MV8 337 aa6.49□□□□□ -1.37
CD44-220ENST00000525688 METTL22Q9BUU2 404 aaPredicted RBP6.49□□□□□ -1.37
CD44-220ENST00000525688 STK17AQ9UEE5 414 aa6.49□□□□□ -1.37
CD44-220ENST00000525688 ST14Q9Y5Y6 855 aa6.49□□□□□ -1.37
CD44-220ENST00000525688 SMARCA4P51532 1647 aa6.48□□□□□ -1.37
CD44-220ENST00000525688 AURKAO14965 403 aa6.48□□□□□ -1.37
CD44-220ENST00000525688 EFCAB14O75071 495 aa6.48□□□□□ -1.37
CD44-220ENST00000525688 VAMP4O75379 141 aa6.48□□□□□ -1.37
CD44-220ENST00000525688 BMP8BP34820 402 aa6.48□□□□□ -1.37
CD44-220ENST00000525688 GSK3AP49840 483 aa6.48□□□□□ -1.37
CD44-220ENST00000525688 KCNMA1Q12791 1236 aa6.48□□□□□ -1.37
CD44-220ENST00000525688 TESK1Q15569 626 aa6.48□□□□□ -1.37
CD44-220ENST00000525688 CLEC16AQ2KHT3 1053 aa6.48□□□□□ -1.37
CD44-220ENST00000525688 CWF19L1Q69YN2 538 aaKnown RBP6.48□□□□□ -1.37
CD44-220ENST00000525688 THNSL2Q86YJ6 484 aa6.48□□□□□ -1.37
CD44-220ENST00000525688 TMEM145Q8NBT3 493 aa6.48□□□□□ -1.37
CD44-220ENST00000525688 COPS5Q92905 334 aa6.48□□□□□ -1.37
CD44-220ENST00000525688 PTPRN2Q92932 1015 aa6.48□□□□□ -1.37
CD44-220ENST00000525688 DBNDD2Q9BQY9 259 aa6.48□□□□□ -1.37
CD44-220ENST00000525688 TRIT1Q9H3H1 467 aaKnown RBP6.48□□□□□ -1.37
CD44-220ENST00000525688 TRIM39Q9HCM9 518 aa6.48□□□□□ -1.37
CD44-220ENST00000525688 GPATCH2Q9NW75 528 aa6.48□□□□□ -1.37
CD44-220ENST00000525688 MAGEC2Q9UBF1 373 aaPredicted RBP6.48□□□□□ -1.37
CD44-220ENST00000525688 MINPP1Q9UNW1 487 aa6.48□□□□□ -1.37
CD44-220ENST00000525688 GPR55Q9Y2T6 319 aaPredicted RBP6.48□□□□□ -1.37
CD44-220ENST00000525688 BAZ1AQ9NRL2 1556 aaPredicted RBP6.48□□□□□ -1.37
CD44-220ENST00000525688 GSC2O15499 205 aa6.47□□□□□ -1.37
CD44-220ENST00000525688 SNRPB2P08579 225 aaKnown RBP6.47□□□□□ -1.37
CD44-220ENST00000525688 H2AFB1P0C5Y9 115 aa6.47□□□□□ -1.37
CD44-220ENST00000525688 H2AFB2P0C5Z0 115 aa6.47□□□□□ -1.37
CD44-220ENST00000525688 MYCLP1P12525 358 aaPredicted RBP6.47□□□□□ -1.37
CD44-220ENST00000525688 STAT3P40763 770 aa6.47□□□□□ -1.37
CD44-220ENST00000525688 NOP2P46087 812 aaKnown RBP6.47□□□□□ -1.37
CD44-220ENST00000525688 NTRK3Q16288 839 aa6.47□□□□□ -1.37
CD44-220ENST00000525688 NKPD1Q17RQ9 610 aa6.47□□□□□ -1.37
CD44-220ENST00000525688 MAMDC2Q7Z304 686 aaPredicted RBP6.47□□□□□ -1.37
CD44-220ENST00000525688 SLC51AQ86UW1 340 aa6.47□□□□□ -1.37
CD44-220ENST00000525688 TSPYL5Q86VY4 417 aaPredicted RBP6.47□□□□□ -1.37
CD44-220ENST00000525688 FBXL6Q8N531 539 aa6.47□□□□□ -1.37
CD44-220ENST00000525688 KREMEN2Q8NCW0 462 aa6.47□□□□□ -1.37
CD44-220ENST00000525688 SLC7A14Q8TBB6 771 aa6.47□□□□□ -1.37
CD44-220ENST00000525688 TCTN2Q96GX1 697 aa6.47□□□□□ -1.37
CD44-220ENST00000525688 MCMBPQ9BTE3 642 aa6.47□□□□□ -1.37
CD44-220ENST00000525688 CAAP1Q9H8G2 361 aa6.47□□□□□ -1.37
CD44-220ENST00000525688 TPSG1Q9NRR2 321 aa6.47□□□□□ -1.37
CD44-220ENST00000525688 SFMBT1Q9UHJ3 866 aa6.47□□□□□ -1.37
CD44-220ENST00000525688 RNF112Q9ULX5 631 aa6.47□□□□□ -1.37
CD44-220ENST00000525688 NCAPD3P42695 1498 aa6.47□□□□□ -1.37
CD44-220ENST00000525688 ATAD2BQ9ULI0 1458 aa6.47□□□□□ -1.37
CD44-220ENST00000525688 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.46□□□□□ -1.38
CD44-220ENST00000525688 FAM155AB1AL88 458 aaPredicted RBP6.46□□□□□ -1.38
CD44-220ENST00000525688 IRS4O14654 1257 aaPredicted RBP6.46□□□□□ -1.38
CD44-220ENST00000525688 VAV1P15498 845 aa6.46□□□□□ -1.38
CD44-220ENST00000525688 KCNJ6P48051 423 aa6.46□□□□□ -1.38
CD44-220ENST00000525688 SCRN1Q12765 414 aa6.46□□□□□ -1.38
CD44-220ENST00000525688 ACBD5Q5T8D3 534 aaPredicted RBP6.46□□□□□ -1.38
CD44-220ENST00000525688 THAP5Q7Z6K1 395 aa6.46□□□□□ -1.38
CD44-220ENST00000525688 LINC00116Q8NCU8 138 aa6.46□□□□□ -1.38
CD44-220ENST00000525688 CHAC2Q8WUX2 184 aa6.46□□□□□ -1.38
CD44-220ENST00000525688 SLC52A2Q9HAB3 445 aa6.46□□□□□ -1.38
CD44-220ENST00000525688 MAPRE3Q9UPY8 281 aa6.46□□□□□ -1.38
CD44-220ENST00000525688 BACE2Q9Y5Z0 518 aa6.46□□□□□ -1.38
CD44-220ENST00000525688 U3KQE9 123 aa6.46□□□□□ -1.38
CD44-220ENST00000525688 GSG1L2A8MUP6 293 aa6.45□□□□□ -1.38
CD44-220ENST00000525688 PDE8AO60658 829 aa6.45□□□□□ -1.38
CD44-220ENST00000525688 IGLV1-40P01703 118 aa6.45□□□□□ -1.38
CD44-220ENST00000525688 ITGB2P05107 769 aa6.45□□□□□ -1.38
CD44-220ENST00000525688 SDSP20132 328 aa6.45□□□□□ -1.38
CD44-220ENST00000525688 POU3F2P20265 443 aaPredicted RBP6.45□□□□□ -1.38
CD44-220ENST00000525688 CLCN7P51798 805 aa6.45□□□□□ -1.38
CD44-220ENST00000525688 RASSF7Q02833 373 aa6.45□□□□□ -1.38
CD44-220ENST00000525688 DPY19L1Q2PZI1 675 aa6.45□□□□□ -1.38
CD44-220ENST00000525688 GAB4Q2WGN9 574 aa6.45□□□□□ -1.38
CD44-220ENST00000525688 DENND5AQ6IQ26 1287 aa6.45□□□□□ -1.38
CD44-220ENST00000525688 STYK1Q6J9G0 422 aa6.45□□□□□ -1.38
CD44-220ENST00000525688 RCSD1Q6JBY9 416 aa6.45□□□□□ -1.38
CD44-220ENST00000525688 CRTC3Q6UUV7 619 aa6.45□□□□□ -1.38
CD44-220ENST00000525688 RSPO2Q6UXX9 243 aaPredicted RBP6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms