RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 NKPD1Q17RQ9 610 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 HSP90AB4PQ58FF6 505 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 SNAP47Q5SQN1 464 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZFYVE27Q5T4F4 411 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 LDLRAD1Q5T700 205 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 NBPF6Q5VWK0 638 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 PRAMEF13Q5VWM6 474 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 CDCP2Q5VXM1 449 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 C9orf131Q5VYM1 1079 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 EEF1DP3Q658K8 133 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 CPZQ66K79 652 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 BICRALQ6AI39 1079 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 TMED8Q6PL24 325 aaPredicted RBP0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 NXPE4Q6UWF7 544 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 DPP8Q6V1X1 898 aaPredicted RBP0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 SPOCD1Q6ZMY3 1216 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZNF574Q6ZN55 896 aaPredicted RBP0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 ARHGEF18Q6ZSZ5 1173 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 HS2ST1Q7LGA3 356 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 TMC4Q7Z404 712 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 METTL16Q86W50 562 aaKnown RBP0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 NT5DC4Q86YG4 428 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 DCP2Q8IU60 420 aaKnown RBP0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 TRIM48Q8IWZ4 208 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 SLFN12Q8IYM2 578 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZNF654Q8IZM8 581 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 LINC00116Q8NCU8 138 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 NUP43Q8NFH3 380 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZNF526Q8TF50 670 aaPredicted RBP0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 MZB1Q8WU39 189 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 GATA6Q92908 595 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 DVL3Q92997 716 aaPredicted RBP0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 MKL1Q969V6 931 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 FAM89AQ96GI7 184 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 PLPPR2Q96GM1 343 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 LOXL4Q96JB6 756 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 LCORQ96JN0 433 aaPredicted RBP0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 CCDC136Q96JN2 1154 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 NBPF4Q96M43 638 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 CCDC140Q96MF4 163 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 PWWP2AQ96N64 755 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 CLIC6Q96NY7 704 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 IPO9Q96P70 1041 aaKnown RBP0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 SETDB2Q96T68 719 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 TRIM56Q9BRZ2 755 aaKnown RBP0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 TINF2Q9BSI4 451 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 NRSN2Q9GZP1 204 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 UBA5Q9GZZ9 404 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 MKRN2Q9H000 416 aaKnown RBP0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 OSBPL2Q9H1P3 480 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 ADAMTS10Q9H324 1103 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 SLITRK6Q9H5Y7 841 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 WDR26Q9H7D7 661 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZSWIM4Q9H7M6 989 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 CCSER2Q9H7U1 834 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 L2HGDHQ9H9P8 463 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 PRDM16Q9HAZ2 1276 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 SPC25Q9HBM1 224 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 CAPN10Q9HC96 672 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 PDLIM7Q9NR12 457 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 CCDC87Q9NVE4 849 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 GMIPQ9P107 970 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 SLAIN2Q9P270 581 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 FTSJ1Q9UET6 329 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 TCFL5Q9UL49 500 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 INPP5FQ9Y2H2 1132 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 EPB41L3Q9Y2J2 1087 aaPredicted RBP0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 COA3Q9Y2R0 106 aaPredicted RBP0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 R3HCC1Q9Y3T6 440 aaKnown RBP0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 TBX22Q9Y458 520 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 PRKAB1Q9Y478 270 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 SUPT16HQ9Y5B9 1047 aaKnown RBP0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 ST14Q9Y5Y6 855 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 CSADQ9Y600 493 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 CAPN6Q9Y6Q1 641 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 PMF1-BGLAPU3KQ54 211 aa0.78□□□□□ -2.28
RNU4-54P-201ENST00000516428 DNAJC25-GNG10A0A024R161 153 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 A0A087WZG4 1122 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 CCDC194A0A1B0GVG4 234 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 NPEPPSL1A6NEC2 478 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 TMEM191CA6NGB0 347 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 KRIT1O00522 736 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 ENPP3O14638 875 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 RGS13O14921 159 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 GSTA4O15217 222 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 TREHO43280 583 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 SRGAP3O43295 1099 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 SUV39H1O43463 412 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 ORC4O43929 436 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 BUB1BO60566 1050 aaPredicted RBP0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 DNAJC6O75061 913 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 LEFTY1O75610 366 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 STK10O94804 968 aaKnown RBP0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 FBXO21O94952 628 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 SLITRK5O94991 958 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 PARNO95453 639 aaKnown RBP0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 MAP4K4O95819 1239 aaPredicted RBP0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 DLGAP3O95886 979 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 EOMESO95936 686 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 CHGBP05060 677 aa0.77□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms