RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 HOOK3Q86VS8 718 aa14.52□□□□□ -0.08
TCOF1-213ENST00000514442 TAOK3Q9H2K8 898 aa14.52□□□□□ -0.08
TCOF1-213ENST00000514442 SLC24A3Q9HC58 644 aa14.52□□□□□ -0.08
TCOF1-213ENST00000514442 PPANQ9NQ55 473 aaKnown RBP14.52□□□□□ -0.08
TCOF1-213ENST00000514442 SCG2P13521 617 aa14.52□□□□□ -0.08
TCOF1-213ENST00000514442 PAK2Q13177 524 aa14.52□□□□□ -0.08
TCOF1-213ENST00000514442 ZNF827Q17R98 1081 aa14.52□□□□□ -0.08
TCOF1-213ENST00000514442 CERKLQ49MI3 558 aaPredicted RBP14.52□□□□□ -0.08
TCOF1-213ENST00000514442 CNPY4Q8N129 248 aa14.52□□□□□ -0.08
TCOF1-213ENST00000514442 TRIM6Q9C030 488 aaPredicted RBP14.52□□□□□ -0.08
TCOF1-213ENST00000514442 STMN4Q9H169 189 aaPredicted RBP14.52□□□□□ -0.08
TCOF1-213ENST00000514442 ARHGEF35A5YM69 484 aa14.52□□□□□ -0.09
TCOF1-213ENST00000514442 EPB41P11171 864 aaKnown RBP14.52□□□□□ -0.09
TCOF1-213ENST00000514442 APOA5Q6Q788 366 aa14.52□□□□□ -0.09
TCOF1-213ENST00000514442 FRMD4BQ9Y2L6 1034 aa14.52□□□□□ -0.09
TCOF1-213ENST00000514442 DIXDC1Q155Q3 683 aa14.52□□□□□ -0.09
TCOF1-213ENST00000514442 GLT8D2Q9H1C3 349 aa14.52□□□□□ -0.09
TCOF1-213ENST00000514442 LEMD3Q9Y2U8 911 aa14.52□□□□□ -0.09
TCOF1-213ENST00000514442 CLRN2A0PK11 232 aa14.51□□□□□ -0.09
TCOF1-213ENST00000514442 KCNJ6P48051 423 aa14.51□□□□□ -0.09
TCOF1-213ENST00000514442 BIRC2Q13490 618 aa14.51□□□□□ -0.09
TCOF1-213ENST00000514442 CACNA2D3Q8IZS8 1091 aa14.51□□□□□ -0.09
TCOF1-213ENST00000514442 NELFBQ8WX92 580 aa14.51□□□□□ -0.09
TCOF1-213ENST00000514442 MYO1AQ9UBC5 1043 aa14.51□□□□□ -0.09
TCOF1-213ENST00000514442 RCOR1Q9UKL0 485 aa14.51□□□□□ -0.09
TCOF1-213ENST00000514442 MRFAP1Q9Y605 127 aa14.51□□□□□ -0.09
TCOF1-213ENST00000514442 TECP42680 631 aa14.51□□□□□ -0.09
TCOF1-213ENST00000514442 IFT88Q13099 833 aa14.51□□□□□ -0.09
TCOF1-213ENST00000514442 RUFY4Q6ZNE9 571 aa14.51□□□□□ -0.09
TCOF1-213ENST00000514442 SELENOOQ9BVL4 669 aa14.51□□□□□ -0.09
TCOF1-213ENST00000514442 INO80Q9ULG1 1556 aaPredicted RBP14.51□□□□□ -0.09
TCOF1-213ENST00000514442 ARHGEF40Q8TER5 1519 aa14.51□□□□□ -0.09
TCOF1-213ENST00000514442 PTPRMP28827 1452 aa14.51□□□□□ -0.09
TCOF1-213ENST00000514442 ATP10DQ9P241 1426 aa14.51□□□□□ -0.09
TCOF1-213ENST00000514442 EEF2P13639 858 aaKnown RBP14.51□□□□□ -0.09
TCOF1-213ENST00000514442 MCAMP43121 646 aa14.51□□□□□ -0.09
TCOF1-213ENST00000514442 E2F5Q15329 346 aa14.51□□□□□ -0.09
TCOF1-213ENST00000514442 ZBED4O75132 1171 aa14.51□□□□□ -0.09
TCOF1-213ENST00000514442 E4F1Q66K89 784 aaPredicted RBP14.51□□□□□ -0.09
TCOF1-213ENST00000514442 NSUN7Q8NE18 718 aaKnown RBP14.51□□□□□ -0.09
TCOF1-213ENST00000514442 UBLCP1Q8WVY7 318 aaPredicted RBP14.51□□□□□ -0.09
TCOF1-213ENST00000514442 FTOQ9C0B1 505 aaKnown RBP eCLIP14.51□□□□□ -0.09
TCOF1-213ENST00000514442 GBP1P32455 592 aa14.5□□□□□ -0.09
TCOF1-213ENST00000514442 ICA1Q05084 483 aa14.5□□□□□ -0.09
TCOF1-213ENST00000514442 ACTR5Q9H9F9 607 aaPredicted RBP14.5□□□□□ -0.09
TCOF1-213ENST00000514442 CMA1P23946 247 aa14.5□□□□□ -0.09
TCOF1-213ENST00000514442 KRT9P35527 623 aa14.5□□□□□ -0.09
TCOF1-213ENST00000514442 BIRC3Q13489 604 aa14.5□□□□□ -0.09
TCOF1-213ENST00000514442 DHX40Q8IX18 779 aaKnown RBP14.5□□□□□ -0.09
TCOF1-213ENST00000514442 CNKSR1Q969H4 720 aa14.5□□□□□ -0.09
TCOF1-213ENST00000514442 L2HGDHQ9H9P8 463 aa14.5□□□□□ -0.09
TCOF1-213ENST00000514442 ATP8A2Q9NTI2 1148 aa14.5□□□□□ -0.09
TCOF1-213ENST00000514442 DNM3Q9UQ16 869 aa14.5□□□□□ -0.09
TCOF1-213ENST00000514442 FAM170AA1A519 330 aa14.5□□□□□ -0.09
TCOF1-213ENST00000514442 APBA1Q02410 837 aa14.5□□□□□ -0.09
TCOF1-213ENST00000514442 TULP2O00295 520 aa14.5□□□□□ -0.09
TCOF1-213ENST00000514442 RESTQ13127 1097 aa14.5□□□□□ -0.09
TCOF1-213ENST00000514442 PSTPIP2Q9H939 334 aa14.5□□□□□ -0.09
TCOF1-213ENST00000514442 GPHNQ9NQX3 736 aaPredicted RBP14.5□□□□□ -0.09
TCOF1-213ENST00000514442 THRAP3Q9Y2W1 955 aaKnown RBP14.5□□□□□ -0.09
TCOF1-213ENST00000514442 DDAH1O94760 285 aa14.49□□□□□ -0.09
TCOF1-213ENST00000514442 PPP1R7Q15435 360 aa14.49□□□□□ -0.09
TCOF1-213ENST00000514442 RASGRP4Q8TDF6 673 aa14.49□□□□□ -0.09
TCOF1-213ENST00000514442 USP31Q70CQ4 1352 aa14.49□□□□□ -0.09
TCOF1-213ENST00000514442 CARMIL3Q8ND23 1372 aa14.49□□□□□ -0.09
TCOF1-213ENST00000514442 LUC7L3O95232 432 aaKnown RBP14.49□□□□□ -0.09
TCOF1-213ENST00000514442 USP17L8P0C7I0 530 aa14.49□□□□□ -0.09
TCOF1-213ENST00000514442 MYCT1Q8N699 235 aa14.49□□□□□ -0.09
TCOF1-213ENST00000514442 DYNLL2Q96FJ2 89 aa14.49□□□□□ -0.09
TCOF1-213ENST00000514442 SORBS3O60504 671 aa14.49□□□□□ -0.09
TCOF1-213ENST00000514442 PRR16Q569H4 304 aa14.49□□□□□ -0.09
TCOF1-213ENST00000514442 ARMCX5Q6P1M9 558 aa14.49□□□□□ -0.09
TCOF1-213ENST00000514442 TPH2Q8IWU9 490 aa14.49□□□□□ -0.09
TCOF1-213ENST00000514442 SPICE1Q8N0Z3 855 aa14.49□□□□□ -0.09
TCOF1-213ENST00000514442 TBC1D31Q96DN5 1066 aa14.49□□□□□ -0.09
TCOF1-213ENST00000514442 PGBD1Q96JS3 809 aa14.49□□□□□ -0.09
TCOF1-213ENST00000514442 LAMC1P11047 1609 aa14.49□□□□□ -0.09
TCOF1-213ENST00000514442 NRKQ7Z2Y5 1582 aa14.49□□□□□ -0.09
TCOF1-213ENST00000514442 SEMA3EO15041 775 aa14.49□□□□□ -0.09
TCOF1-213ENST00000514442 RXRBP28702 533 aa14.49□□□□□ -0.09
TCOF1-213ENST00000514442 RTEL1Q9NZ71 1219 aa14.49□□□□□ -0.09
TCOF1-213ENST00000514442 CETN3O15182 167 aa14.48□□□□□ -0.09
TCOF1-213ENST00000514442 KCNQ2O43526 872 aa14.48□□□□□ -0.09
TCOF1-213ENST00000514442 LRRC45Q96CN5 670 aa14.48□□□□□ -0.09
TCOF1-213ENST00000514442 TRIM7Q9C029 511 aa14.48□□□□□ -0.09
TCOF1-213ENST00000514442 GINS2Q9Y248 185 aa14.48□□□□□ -0.09
TCOF1-213ENST00000514442 NEXMIFQ5QGS0 1516 aa14.48□□□□□ -0.09
TCOF1-213ENST00000514442 H7C1D1 291 aa14.48□□□□□ -0.09
TCOF1-213ENST00000514442 KRT5P13647 590 aa14.48□□□□□ -0.09
TCOF1-213ENST00000514442 TTC14Q96N46 770 aa14.48□□□□□ -0.09
TCOF1-213ENST00000514442 BPIFA3Q9BQP9 254 aa14.48□□□□□ -0.09
TCOF1-213ENST00000514442 DONSONQ9NYP3 566 aa14.48□□□□□ -0.09
TCOF1-213ENST00000514442 AP5Z1O43299 807 aa14.48□□□□□ -0.09
TCOF1-213ENST00000514442 GCNT3O95395 438 aa14.48□□□□□ -0.09
TCOF1-213ENST00000514442 VIMP08670 466 aaKnown RBP14.48□□□□□ -0.09
TCOF1-213ENST00000514442 PPP1R2P41236 205 aa14.48□□□□□ -0.09
TCOF1-213ENST00000514442 EAPPQ56P03 285 aaPredicted RBP14.48□□□□□ -0.09
TCOF1-213ENST00000514442 MYO3AQ8NEV4 1616 aa14.48□□□□□ -0.09
TCOF1-213ENST00000514442 SOS2Q07890 1332 aaPredicted RBP14.48□□□□□ -0.09
TCOF1-213ENST00000514442 TMEM232C9JQI7 657 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms