RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 RTN1Q16799 776 aa11.42□□□□□ -0.58
TOPBP1-209ENST00000513818 GPATCH4Q5T3I0 446 aaKnown RBP11.42□□□□□ -0.58
TOPBP1-209ENST00000513818 WDR78Q5VTH9 848 aa11.42□□□□□ -0.58
TOPBP1-209ENST00000513818 HOMER1Q86YM7 354 aa11.42□□□□□ -0.58
TOPBP1-209ENST00000513818 CCDC82Q8N4S0 544 aa11.42□□□□□ -0.58
TOPBP1-209ENST00000513818 PRPF38AQ8NAV1 312 aaKnown RBP11.42□□□□□ -0.58
TOPBP1-209ENST00000513818 CTCFLQ8NI51 663 aaPredicted RBP11.42□□□□□ -0.58
TOPBP1-209ENST00000513818 SPATC1LQ9H0A9 340 aa11.42□□□□□ -0.58
TOPBP1-209ENST00000513818 EFCC1Q9HA90 598 aa11.42□□□□□ -0.58
TOPBP1-209ENST00000513818 SLC38A10Q9HBR0 1119 aa11.42□□□□□ -0.58
TOPBP1-209ENST00000513818 NCOA5Q9HCD5 579 aaKnown RBP11.42□□□□□ -0.58
TOPBP1-209ENST00000513818 MORF4L1Q9UBU8 362 aa11.42□□□□□ -0.58
TOPBP1-209ENST00000513818 ZNF214Q9UL59 606 aaPredicted RBP11.42□□□□□ -0.58
TOPBP1-209ENST00000513818 HPS5Q9UPZ3 1129 aa11.42□□□□□ -0.58
TOPBP1-209ENST00000513818 RIPK3Q9Y572 518 aa11.42□□□□□ -0.58
TOPBP1-209ENST00000513818 ZNF536O15090 1300 aa11.41□□□□□ -0.58
TOPBP1-209ENST00000513818 MYH6P13533 1939 aa11.41□□□□□ -0.58
TOPBP1-209ENST00000513818 HAX1O00165 279 aa11.41□□□□□ -0.58
TOPBP1-209ENST00000513818 CYTH3O43739 400 aa11.41□□□□□ -0.58
TOPBP1-209ENST00000513818 ZBED4O75132 1171 aa11.41□□□□□ -0.58
TOPBP1-209ENST00000513818 CDC27P30260 824 aa11.41□□□□□ -0.58
TOPBP1-209ENST00000513818 METAP2P50579 478 aaKnown RBP eCLIP11.41□□□□□ -0.58
TOPBP1-209ENST00000513818 CCT2P78371 535 aaKnown RBP11.41□□□□□ -0.58
TOPBP1-209ENST00000513818 LACTBP83111 547 aaPredicted RBP11.41□□□□□ -0.58
TOPBP1-209ENST00000513818 CDC37Q16543 378 aaPredicted RBP11.41□□□□□ -0.58
TOPBP1-209ENST00000513818 SNRNP48Q6IEG0 339 aaKnown RBP11.41□□□□□ -0.58
TOPBP1-209ENST00000513818 BTNL9Q6UXG8 535 aa11.41□□□□□ -0.58
TOPBP1-209ENST00000513818 SYNE3Q6ZMZ3 975 aa11.41□□□□□ -0.58
TOPBP1-209ENST00000513818 ADGRF4Q8IZF3 695 aa11.41□□□□□ -0.58
TOPBP1-209ENST00000513818 GPRC5AQ8NFJ5 357 aa11.41□□□□□ -0.58
TOPBP1-209ENST00000513818 CHURC1Q8WUH1 139 aa11.41□□□□□ -0.58
TOPBP1-209ENST00000513818 TRIM47Q96LD4 638 aa11.41□□□□□ -0.58
TOPBP1-209ENST00000513818 AGBL1Q96MI9 1066 aa11.41□□□□□ -0.58
TOPBP1-209ENST00000513818 MOV10L1Q9BXT6 1211 aaKnown RBP11.41□□□□□ -0.58
TOPBP1-209ENST00000513818 RANBP17Q9H2T7 1088 aaKnown RBP11.41□□□□□ -0.58
TOPBP1-209ENST00000513818 JMJD4Q9H9V9 463 aa11.41□□□□□ -0.58
TOPBP1-209ENST00000513818 HOMER2Q9NSB8 354 aa11.41□□□□□ -0.58
TOPBP1-209ENST00000513818 HOXC10Q9NYD6 342 aa11.41□□□□□ -0.58
TOPBP1-209ENST00000513818 TPCN1Q9ULQ1 816 aa11.41□□□□□ -0.58
TOPBP1-209ENST00000513818 ADAMTS5Q9UNA0 930 aa11.41□□□□□ -0.58
TOPBP1-209ENST00000513818 RABGAP1Q9Y3P9 1069 aa11.41□□□□□ -0.58
TOPBP1-209ENST00000513818 CTDP1Q9Y5B0 961 aaPredicted RBP11.41□□□□□ -0.58
TOPBP1-209ENST00000513818 SMCHD1A6NHR9 2005 aa11.41□□□□□ -0.58
TOPBP1-209ENST00000513818 BAZ2BQ9UIF8 2168 aaKnown RBP11.41□□□□□ -0.58
TOPBP1-209ENST00000513818 CNTNAP5Q8WYK1 1306 aa11.4□□□□□ -0.58
TOPBP1-209ENST00000513818 PLA2G6O60733 806 aa11.4□□□□□ -0.58
TOPBP1-209ENST00000513818 CD2BP2O95400 341 aaKnown RBP11.4□□□□□ -0.58
TOPBP1-209ENST00000513818 PDIA3P30101 505 aaKnown RBP11.4□□□□□ -0.58
TOPBP1-209ENST00000513818 PSMC4P43686 418 aa11.4□□□□□ -0.58
TOPBP1-209ENST00000513818 USH1GQ495M9 461 aa11.4□□□□□ -0.58
TOPBP1-209ENST00000513818 TMTC3Q6ZXV5 915 aa11.4□□□□□ -0.58
TOPBP1-209ENST00000513818 NCAPG2Q86XI2 1143 aa11.4□□□□□ -0.58
TOPBP1-209ENST00000513818 TMTC2Q8N394 836 aa11.4□□□□□ -0.58
TOPBP1-209ENST00000513818 SRBD1Q8N5C6 995 aaKnown RBP11.4□□□□□ -0.58
TOPBP1-209ENST00000513818 FANCBQ8NB91 859 aa11.4□□□□□ -0.58
TOPBP1-209ENST00000513818 GTF3C2Q8WUA4 911 aaPredicted RBP11.4□□□□□ -0.58
TOPBP1-209ENST00000513818 PIGSQ96S52 555 aa11.4□□□□□ -0.58
TOPBP1-209ENST00000513818 FAM217BQ9NTX9 383 aaPredicted RBP11.4□□□□□ -0.58
TOPBP1-209ENST00000513818 RBBP6Q7Z6E9 1792 aaKnown RBP11.4□□□□□ -0.58
TOPBP1-209ENST00000513818 TNPO2O14787 897 aaKnown RBP11.39□□□□□ -0.59
TOPBP1-209ENST00000513818 PPP1R11O60927 126 aaPredicted RBP11.39□□□□□ -0.59
TOPBP1-209ENST00000513818 FMNL1O95466 1100 aaPredicted RBP11.39□□□□□ -0.59
TOPBP1-209ENST00000513818 CALM1P0DP23 149 aa11.39□□□□□ -0.59
TOPBP1-209ENST00000513818 CALM2P0DP24 149 aa11.39□□□□□ -0.59
TOPBP1-209ENST00000513818 CALM3P0DP25 149 aa11.39□□□□□ -0.59
TOPBP1-209ENST00000513818 ALAS1P13196 640 aa11.39□□□□□ -0.59
TOPBP1-209ENST00000513818 ERCC3P19447 782 aa11.39□□□□□ -0.59
TOPBP1-209ENST00000513818 KIF5BP33176 963 aa11.39□□□□□ -0.59
TOPBP1-209ENST00000513818 ADD1P35611 737 aaKnown RBP11.39□□□□□ -0.59
TOPBP1-209ENST00000513818 RABEP1Q15276 862 aa11.39□□□□□ -0.59
TOPBP1-209ENST00000513818 QRICH1Q2TAL8 776 aa11.39□□□□□ -0.59
TOPBP1-209ENST00000513818 CCAR1Q8IX12 1150 aaKnown RBP11.39□□□□□ -0.59
TOPBP1-209ENST00000513818 MB21D1Q8N884 522 aa11.39□□□□□ -0.59
TOPBP1-209ENST00000513818 NECAB1Q8N987 351 aa11.39□□□□□ -0.59
TOPBP1-209ENST00000513818 TEX13BQ9BXU2 312 aa11.39□□□□□ -0.59
TOPBP1-209ENST00000513818 CWC22Q9HCG8 908 aaKnown RBP11.39□□□□□ -0.59
TOPBP1-209ENST00000513818 CCPG1Q9ULG6 757 aa11.39□□□□□ -0.59
TOPBP1-209ENST00000513818 TRIM17Q9Y577 477 aa11.39□□□□□ -0.59
TOPBP1-209ENST00000513818 NID2Q14112 1375 aa11.39□□□□□ -0.59
TOPBP1-209ENST00000513818 CENPFP49454 3210 aa11.39□□□□□ -0.59
TOPBP1-209ENST00000513818 STAT3P40763 770 aa11.38□□□□□ -0.59
TOPBP1-209ENST00000513818 FCGRTP55899 365 aa11.38□□□□□ -0.59
TOPBP1-209ENST00000513818 PRKCZQ05513 592 aa11.38□□□□□ -0.59
TOPBP1-209ENST00000513818 ST3GAL1Q11201 340 aa11.38□□□□□ -0.59
TOPBP1-209ENST00000513818 SCRN1Q12765 414 aa11.38□□□□□ -0.59
TOPBP1-209ENST00000513818 KIF22Q14807 665 aa11.38□□□□□ -0.59
TOPBP1-209ENST00000513818 MUM1L1Q5H9M0 696 aa11.38□□□□□ -0.59
TOPBP1-209ENST00000513818 GPR142Q7Z601 462 aa11.38□□□□□ -0.59
TOPBP1-209ENST00000513818 RIOX2Q8IUF8 465 aa11.38□□□□□ -0.59
TOPBP1-209ENST00000513818 FBXL16Q8N461 479 aa11.38□□□□□ -0.59
TOPBP1-209ENST00000513818 PHKBQ93100 1093 aa11.38□□□□□ -0.59
TOPBP1-209ENST00000513818 ERO1AQ96HE7 468 aa11.38□□□□□ -0.59
TOPBP1-209ENST00000513818 RNF146Q9NTX7 359 aa11.38□□□□□ -0.59
TOPBP1-209ENST00000513818 GABRQQ9UN88 632 aa11.38□□□□□ -0.59
TOPBP1-209ENST00000513818 DOCK3Q8IZD9 2030 aa11.38□□□□□ -0.59
TOPBP1-209ENST00000513818 LCTP09848 1927 aa11.37□□□□□ -0.59
TOPBP1-209ENST00000513818 NFIBO00712 420 aa11.37□□□□□ -0.59
TOPBP1-209ENST00000513818 ICAM1P05362 532 aa11.37□□□□□ -0.59
TOPBP1-209ENST00000513818 EVCP57679 992 aa11.37□□□□□ -0.59
TOPBP1-209ENST00000513818 CCNA1P78396 465 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms