RNA–Protein interactions for RNA: ENST00000503468.5

NEDD4-204, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best)

Gene NEDD4, Length 6,339 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-204ENST00000503468 RBM26Q5T8P6 1007 aaKnown RBP3.17□□□□□ -1.9
NEDD4-204ENST00000503468 SLFN11Q7Z7L1 901 aa3.17□□□□□ -1.9
NEDD4-204ENST00000503468 TBC1D22AQ8WUA7 517 aa3.17□□□□□ -1.9
NEDD4-204ENST00000503468 CPSF2Q9P2I0 782 aaKnown RBP3.17□□□□□ -1.9
NEDD4-204ENST00000503468 ITGB1BP2Q9UKP3 347 aa3.17□□□□□ -1.9
NEDD4-204ENST00000503468 SQORQ9Y6N5 450 aa3.17□□□□□ -1.9
NEDD4-204ENST00000503468 SHTN1A0MZ66 631 aa3.17□□□□□ -1.9
NEDD4-204ENST00000503468 SPDYE4A6NLX3 237 aa3.17□□□□□ -1.9
NEDD4-204ENST00000503468 HAS3O00219 553 aa3.17□□□□□ -1.9
NEDD4-204ENST00000503468 PPP6R2O75170 966 aa3.17□□□□□ -1.9
NEDD4-204ENST00000503468 LINC00271P0C7V0 271 aa3.17□□□□□ -1.9
NEDD4-204ENST00000503468 HCLS1P14317 486 aaPredicted RBP3.17□□□□□ -1.9
NEDD4-204ENST00000503468 SPDYAQ5MJ70 313 aa3.17□□□□□ -1.9
NEDD4-204ENST00000503468 CCDC181Q5TID7 509 aa3.17□□□□□ -1.9
NEDD4-204ENST00000503468 C16orf86Q6ZW13 317 aa3.17□□□□□ -1.9
NEDD4-204ENST00000503468 C10orf67Q8IYJ2 551 aa3.17□□□□□ -1.9
NEDD4-204ENST00000503468 TMEM87BQ96K49 555 aa3.17□□□□□ -1.9
NEDD4-204ENST00000503468 CDC5LQ99459 802 aaKnown RBP3.17□□□□□ -1.9
NEDD4-204ENST00000503468 HSD17B14Q9BPX1 270 aa3.17□□□□□ -1.9
NEDD4-204ENST00000503468 CCDC87Q9NVE4 849 aa3.17□□□□□ -1.9
NEDD4-204ENST00000503468 PPP1R9AQ9ULJ8 1098 aa3.17□□□□□ -1.9
NEDD4-204ENST00000503468 ARIH1Q9Y4X5 557 aaPredicted RBP3.17□□□□□ -1.9
NEDD4-204ENST00000503468 CACNA1GO43497 2377 aa3.17□□□□□ -1.9
NEDD4-204ENST00000503468 FRMPD2Q68DX3 1309 aaPredicted RBP3.17□□□□□ -1.9
NEDD4-204ENST00000503468 MBLAC1A4D2B0 266 aaPredicted RBP3.16□□□□□ -1.9
NEDD4-204ENST00000503468 KCNQ3O43525 872 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 CACNG3O60359 315 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 POU3F3P20264 500 aaPredicted RBP3.16□□□□□ -1.9
NEDD4-204ENST00000503468 FKBP1BP68106 108 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 DCTN1Q14203 1278 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 CENPPQ6IPU0 288 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 LMO3Q8TAP4 145 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 ZNF507Q8TCN5 953 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 INPP4AQ96PE3 977 aaPredicted RBP3.16□□□□□ -1.9
NEDD4-204ENST00000503468 CTAGE1Q96RT6 745 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 NEU2Q9Y3R4 380 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 CBFA2T2O43439 604 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 SLC18A1P54219 525 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 CORO7P57737 925 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 NLRP12P59046 1061 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 PTK7Q13308 1070 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 APOBEC3HQ6NTF7 200 aaKnown RBP3.16□□□□□ -1.9
NEDD4-204ENST00000503468 ARMC9Q7Z3E5 817 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 CCDC83Q8IWF9 413 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 CCDC170Q8IYT3 715 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 CEP112Q8N8E3 955 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 RDM1Q8NG50 284 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 ZSCAN18Q8TBC5 510 aaPredicted RBP3.16□□□□□ -1.9
NEDD4-204ENST00000503468 RUFY2Q8WXA3 655 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 DHX38Q92620 1227 aaKnown RBP3.16□□□□□ -1.9
NEDD4-204ENST00000503468 C11orf84Q9BUA3 381 aaPredicted RBP3.16□□□□□ -1.9
NEDD4-204ENST00000503468 KCND2Q9NZV8 630 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 KLHL33A6NCF5 533 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 FOXO6A8MYZ6 492 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 CASTP20810 708 aaKnown RBP3.16□□□□□ -1.9
NEDD4-204ENST00000503468 BMP6P22004 513 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 PROZP22891 400 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 PAX3P23760 479 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 SLC8A1P32418 973 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 NF2P35240 595 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 AARSP49588 968 aaKnown RBP eCLIP3.16□□□□□ -1.95e-7■■■■■ 27.5
NEDD4-204ENST00000503468 ARHGAP29Q52LW3 1261 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 BNC2Q6ZN30 1099 aaPredicted RBP3.16□□□□□ -1.9
NEDD4-204ENST00000503468 OTUD6BQ8N6M0 293 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 LINC00116Q8NCU8 138 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 PANK1Q8TE04 598 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 IQCDQ96DY2 449 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 CABS1Q96KC9 395 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 PHF20Q9BVI0 1012 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 VIPAS39Q9H9C1 493 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 ANO10Q9NW15 660 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 PHLPP2Q6ZVD8 1323 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 NEK4P51957 841 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 ICA1Q05084 483 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 DRP2Q13474 957 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 SPDYCQ5MJ68 293 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 PRR5LQ6MZQ0 368 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 CCDC73Q6ZRK6 1079 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 HOMER1Q86YM7 354 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 FMR1NBQ8N0W7 255 aaPredicted RBP3.16□□□□□ -1.9
NEDD4-204ENST00000503468 ARMC2Q8NEN0 867 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 C16orf45Q96MC5 204 aaPredicted RBP3.16□□□□□ -1.9
NEDD4-204ENST00000503468 P2RX7Q99572 595 aaKnown RBP3.16□□□□□ -1.9
NEDD4-204ENST00000503468 MMTAG2Q9BU76 263 aaKnown RBP3.16□□□□□ -1.9
NEDD4-204ENST00000503468 OLFML3Q9NRN5 406 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 CFAP45Q9UL16 551 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 Q9Y3F1 56 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 MCM3APO60318 1980 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 KIAA1549Q9HCM3 1950 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 PJA2O43164 708 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 CDH5P33151 784 aaPredicted RBP3.16□□□□□ -1.9
NEDD4-204ENST00000503468 SLC8A3P57103 927 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 APBA1Q02410 837 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 ANKRD1Q15327 319 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 GORABQ5T7V8 394 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 PROSER2Q86WR7 435 aaPredicted RBP3.16□□□□□ -1.9
NEDD4-204ENST00000503468 ITPRIPQ8IWB1 547 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 SH3GL3Q99963 347 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 THUMPD2Q9BTF0 503 aaKnown RBP3.16□□□□□ -1.9
NEDD4-204ENST00000503468 TMEM109Q9BVC6 243 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms