RNA–Protein interactions for RNA: ENST00000494012.1

MACF1-222, Transcript of microtubule-actin crosslinking factor 1, human

TSL 4

Gene MACF1, Length 667 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MACF1-222	ENST00000494012	RPS6KB1	P23443	525 aa		11.64	□□□□□ -0.55
MACF1-222	ENST00000494012	PTPRE	P23469	700 aa		11.64	□□□□□ -0.55
MACF1-222	ENST00000494012	EXOSC10	Q01780	885 aa	Known RBP	11.64	□□□□□ -0.55
MACF1-222	ENST00000494012	GRB14	Q14449	540 aa		11.64	□□□□□ -0.55
MACF1-222	ENST00000494012	KCTD2	Q14681	263 aa		11.64	□□□□□ -0.55
MACF1-222	ENST00000494012	TKFC	Q3LXA3	575 aa		11.64	□□□□□ -0.55
MACF1-222	ENST00000494012	C8orf34	Q49A92	452 aa		11.64	□□□□□ -0.55
MACF1-222	ENST00000494012	MORN1	Q5T089	497 aa		11.64	□□□□□ -0.55
MACF1-222	ENST00000494012	TRMT44	Q8IYL2	757 aa	Known RBP	11.64	□□□□□ -0.55
MACF1-222	ENST00000494012	CHST13	Q8NET6	341 aa		11.64	□□□□□ -0.55
MACF1-222	ENST00000494012	PXYLP1	Q8TE99	480 aa		11.64	□□□□□ -0.55
MACF1-222	ENST00000494012	APBA2	Q99767	749 aa		11.64	□□□□□ -0.55
MACF1-222	ENST00000494012	LRRC2	Q9BYS8	371 aa		11.64	□□□□□ -0.55
MACF1-222	ENST00000494012	TM6SF1	Q9BZW5	370 aa		11.64	□□□□□ -0.55
MACF1-222	ENST00000494012	SENP2	Q9HC62	589 aa		11.64	□□□□□ -0.55
MACF1-222	ENST00000494012	SLC5A4	Q9NY91	659 aa		11.64	□□□□□ -0.55
MACF1-222	ENST00000494012	MAD2L2	Q9UI95	211 aa		11.64	□□□□□ -0.55
MACF1-222	ENST00000494012	GABRQ	Q9UN88	632 aa		11.64	□□□□□ -0.55
MACF1-222	ENST00000494012	PALM3	A6NDB9	673 aa	Predicted RBP	11.63	□□□□□ -0.55
MACF1-222	ENST00000494012	ADCY3	O60266	1144 aa		11.63	□□□□□ -0.55
MACF1-222	ENST00000494012	XRCC5	P13010	732 aa	Known RBP	11.63	□□□□□ -0.55
MACF1-222	ENST00000494012	GRK4	P32298	578 aa		11.63	□□□□□ -0.55
MACF1-222	ENST00000494012	SLC4A3	P48751	1232 aa		11.63	□□□□□ -0.55
MACF1-222	ENST00000494012	RCAN1	P53805	252 aa		11.63	□□□□□ -0.55
MACF1-222	ENST00000494012	MAP2K5	Q13163	448 aa		11.63	□□□□□ -0.55
MACF1-222	ENST00000494012	COL9A3	Q14050	684 aa	Predicted RBP	11.63	□□□□□ -0.55
MACF1-222	ENST00000494012	CCDC174	Q6PII3	467 aa		11.63	□□□□□ -0.55
MACF1-222	ENST00000494012	RUFY3	Q7L099	469 aa		11.63	□□□□□ -0.55
MACF1-222	ENST00000494012	ADGRF4	Q8IZF3	695 aa		11.63	□□□□□ -0.55
MACF1-222	ENST00000494012	FBXL16	Q8N461	479 aa		11.63	□□□□□ -0.55
MACF1-222	ENST00000494012	NUP133	Q8WUM0	1156 aa		11.63	□□□□□ -0.55
MACF1-222	ENST00000494012	TCEANC2	Q96MN5	208 aa		11.63	□□□□□ -0.55
MACF1-222	ENST00000494012	MMP19	Q99542	508 aa		11.63	□□□□□ -0.55
MACF1-222	ENST00000494012	LZTS2	Q9BRK4	669 aa		11.63	□□□□□ -0.55
MACF1-222	ENST00000494012	ACAD9	Q9H845	621 aa		11.63	□□□□□ -0.55
MACF1-222	ENST00000494012	ZSWIM6	Q9HCJ5	1215 aa		11.63	□□□□□ -0.55
MACF1-222	ENST00000494012	GPHN	Q9NQX3	736 aa	Predicted RBP	11.63	□□□□□ -0.55
MACF1-222	ENST00000494012	GJD2	Q9UKL4	321 aa		11.63	□□□□□ -0.55
MACF1-222	ENST00000494012	CCPG1	Q9ULG6	757 aa		11.63	□□□□□ -0.55
MACF1-222	ENST00000494012	CYP46A1	Q9Y6A2	500 aa		11.63	□□□□□ -0.55
MACF1-222	ENST00000494012	ZNF536	O15090	1300 aa		11.62	□□□□□ -0.55
MACF1-222	ENST00000494012	HOXC6	P09630	235 aa		11.62	□□□□□ -0.55
MACF1-222	ENST00000494012	ADORA2A	P29274	412 aa		11.62	□□□□□ -0.55
MACF1-222	ENST00000494012	GNAQ	P50148	359 aa		11.62	□□□□□ -0.55
MACF1-222	ENST00000494012	TRAF1	Q13077	416 aa		11.62	□□□□□ -0.55
MACF1-222	ENST00000494012	CDC37	Q16543	378 aa	Predicted RBP	11.62	□□□□□ -0.55
MACF1-222	ENST00000494012	APOA5	Q6Q788	366 aa		11.62	□□□□□ -0.55
MACF1-222	ENST00000494012	DPP9	Q86TI2	863 aa		11.62	□□□□□ -0.55
MACF1-222	ENST00000494012	MICU3	Q86XE3	530 aa		11.62	□□□□□ -0.55
MACF1-222	ENST00000494012	STAG2	Q8N3U4	1231 aa		11.62	□□□□□ -0.55
MACF1-222	ENST00000494012	USP6NL	Q92738	828 aa		11.62	□□□□□ -0.55
MACF1-222	ENST00000494012	ARMC5	Q96C12	935 aa		11.62	□□□□□ -0.55
MACF1-222	ENST00000494012	AGBL1	Q96MI9	1066 aa		11.62	□□□□□ -0.55
MACF1-222	ENST00000494012	MYL10	Q9BUA6	226 aa		11.62	□□□□□ -0.55
MACF1-222	ENST00000494012	UBA5	Q9GZZ9	404 aa		11.62	□□□□□ -0.55
MACF1-222	ENST00000494012	UPF2	Q9HAU5	1272 aa	Known RBP	11.62	□□□□□ -0.55
MACF1-222	ENST00000494012	HOMER2	Q9NSB8	354 aa		11.62	□□□□□ -0.55
MACF1-222	ENST00000494012	RNF146	Q9NTX7	359 aa		11.62	□□□□□ -0.55
MACF1-222	ENST00000494012	PFAS	O15067	1338 aa		11.61	□□□□□ -0.55
MACF1-222	ENST00000494012	KLF18	A0A0U1RQI7	1052 aa		11.61	□□□□□ -0.55
MACF1-222	ENST00000494012	ZBTB43	O43298	467 aa		11.61	□□□□□ -0.55
MACF1-222	ENST00000494012	HMGCR	P04035	888 aa		11.61	□□□□□ -0.55
MACF1-222	ENST00000494012	ALAS1	P13196	640 aa		11.61	□□□□□ -0.55
MACF1-222	ENST00000494012	CPA1	P15085	419 aa		11.61	□□□□□ -0.55
MACF1-222	ENST00000494012	CYP2B6	P20813	491 aa		11.61	□□□□□ -0.55
MACF1-222	ENST00000494012	KCNA4	P22459	653 aa		11.61	□□□□□ -0.55
MACF1-222	ENST00000494012	SMARCA1	P28370	1054 aa		11.61	□□□□□ -0.55
MACF1-222	ENST00000494012	RGS19	P49795	217 aa		11.61	□□□□□ -0.55
MACF1-222	ENST00000494012	SNAP25	P60880	206 aa		11.61	□□□□□ -0.55
MACF1-222	ENST00000494012	UBXN2A	P68543	259 aa		11.61	□□□□□ -0.55
MACF1-222	ENST00000494012		Q6ZUG5	572 aa		11.61	□□□□□ -0.55
MACF1-222	ENST00000494012	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	11.61	□□□□□ -0.55
MACF1-222	ENST00000494012	ANKRD35	Q8N283	1001 aa		11.61	□□□□□ -0.55
MACF1-222	ENST00000494012	BRF1	Q92994	677 aa		11.61	□□□□□ -0.55
MACF1-222	ENST00000494012	DDX11	Q96FC9	970 aa		11.61	□□□□□ -0.55
MACF1-222	ENST00000494012	TRERF1	Q96PN7	1200 aa		11.61	□□□□□ -0.55
MACF1-222	ENST00000494012	CPVL	Q9H3G5	476 aa		11.61	□□□□□ -0.55
MACF1-222	ENST00000494012	RBM28	Q9NW13	759 aa	Known RBP	11.61	□□□□□ -0.55
MACF1-222	ENST00000494012	BIN2	Q9UBW5	565 aa	Predicted RBP	11.61	□□□□□ -0.55
MACF1-222	ENST00000494012	RIPK3	Q9Y572	518 aa		11.61	□□□□□ -0.55
MACF1-222	ENST00000494012	CCDC196	A0A1B0GTZ2	297 aa		11.6	□□□□□ -0.55
MACF1-222	ENST00000494012	GOLGA8B	A8MQT2	603 aa		11.6	□□□□□ -0.55
MACF1-222	ENST00000494012	ZBTB5	O15062	677 aa		11.6	□□□□□ -0.55
MACF1-222	ENST00000494012	SEC24B	O95487	1268 aa		11.6	□□□□□ -0.55
MACF1-222	ENST00000494012	ELN	P15502	786 aa		11.6	□□□□□ -0.55
MACF1-222	ENST00000494012	PPP2R5B	Q15173	497 aa		11.6	□□□□□ -0.55
MACF1-222	ENST00000494012	QRICH1	Q2TAL8	776 aa		11.6	□□□□□ -0.55
MACF1-222	ENST00000494012	CCDC144CP	Q8IYA2	1237 aa		11.6	□□□□□ -0.55
MACF1-222	ENST00000494012	FANCB	Q8NB91	859 aa		11.6	□□□□□ -0.55
MACF1-222	ENST00000494012	SH3TC2	Q8TF17	1288 aa		11.6	□□□□□ -0.55
MACF1-222	ENST00000494012	IL17RA	Q96F46	866 aa		11.6	□□□□□ -0.55
MACF1-222	ENST00000494012	ZNF333	Q96JL9	665 aa		11.6	□□□□□ -0.55
MACF1-222	ENST00000494012	SPZ1	Q9BXG8	430 aa		11.6	□□□□□ -0.55
MACF1-222	ENST00000494012	AMN	Q9BXJ7	453 aa		11.6	□□□□□ -0.55
MACF1-222	ENST00000494012	AGXT2	Q9BYV1	514 aa		11.6	□□□□□ -0.55
MACF1-222	ENST00000494012	UPF3B	Q9BZI7	483 aa	Known RBP	11.6	□□□□□ -0.55
MACF1-222	ENST00000494012	MAF1	Q9H063	256 aa		11.6	□□□□□ -0.55
MACF1-222	ENST00000494012	RIOX1	Q9H6W3	641 aa		11.6	□□□□□ -0.55
MACF1-222	ENST00000494012	JMJD4	Q9H9V9	463 aa		11.6	□□□□□ -0.55
MACF1-222	ENST00000494012	VAT1L	Q9HCJ6	419 aa		11.6	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms