RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 C6orf222P0C671 652 aaPredicted RBP15.71■□□□□ 0.11
HDAC3-213ENST00000492506 NKX3-2P78367 333 aa15.71■□□□□ 0.11
HDAC3-213ENST00000492506 CCDC144BQ3MJ40 725 aa15.71■□□□□ 0.11
HDAC3-213ENST00000492506 HSP90AB4PQ58FF6 505 aa15.71■□□□□ 0.11
HDAC3-213ENST00000492506 CTR9Q6PD62 1173 aa15.71■□□□□ 0.11
HDAC3-213ENST00000492506 CCDC129Q6ZRS4 1044 aa15.71■□□□□ 0.11
HDAC3-213ENST00000492506 CLASRPQ8N2M8 674 aaKnown RBP15.71■□□□□ 0.11
HDAC3-213ENST00000492506 PCSK9Q8NBP7 692 aaKnown RBP15.71■□□□□ 0.11
HDAC3-213ENST00000492506 ADAMTS19Q8TE59 1207 aa15.71■□□□□ 0.11
HDAC3-213ENST00000492506 DDX11Q96FC9 970 aa15.71■□□□□ 0.11
HDAC3-213ENST00000492506 KATNBL1Q9H079 304 aa15.71■□□□□ 0.11
HDAC3-213ENST00000492506 PAG1Q9NWQ8 432 aa15.71■□□□□ 0.11
HDAC3-213ENST00000492506 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.71■□□□□ 0.11
HDAC3-213ENST00000492506 CXXC1Q9P0U4 656 aaPredicted RBP15.71■□□□□ 0.11
HDAC3-213ENST00000492506 L1TD1Q5T7N2 865 aaKnown RBP15.7■□□□□ 0.1
HDAC3-213ENST00000492506 PSRC1Q6PGN9 363 aaPredicted RBP15.7■□□□□ 0.1
HDAC3-213ENST00000492506 CCDC174Q6PII3 467 aa15.7■□□□□ 0.1
HDAC3-213ENST00000492506 TMEM199Q8N511 208 aa15.7■□□□□ 0.1
HDAC3-213ENST00000492506 HERVK_113Q902F9 699 aa15.7■□□□□ 0.1
HDAC3-213ENST00000492506 KIF1BPQ96EK5 621 aa15.7■□□□□ 0.1
HDAC3-213ENST00000492506 PPP1R12CQ9BZL4 782 aa15.7■□□□□ 0.1
HDAC3-213ENST00000492506 A0A0U1RQG5 324 aaPredicted RBP15.69■□□□□ 0.1
HDAC3-213ENST00000492506 F5H6K3 240 aa15.69■□□□□ 0.1
HDAC3-213ENST00000492506 RAD21O60216 631 aa15.69■□□□□ 0.1
HDAC3-213ENST00000492506 NDUFB10O96000 172 aa15.69■□□□□ 0.1
HDAC3-213ENST00000492506 IFIT2P09913 472 aaKnown RBP15.69■□□□□ 0.1
HDAC3-213ENST00000492506 CYP2C18P33260 490 aa15.69■□□□□ 0.1
HDAC3-213ENST00000492506 MRPS5P82675 430 aaKnown RBP15.69■□□□□ 0.1
HDAC3-213ENST00000492506 KLRC3Q07444 240 aa15.69■□□□□ 0.1
HDAC3-213ENST00000492506 UBE3CQ15386 1083 aa15.69■□□□□ 0.1
HDAC3-213ENST00000492506 GNASQ5JWF2 1037 aa15.69■□□□□ 0.1
HDAC3-213ENST00000492506 PRPF38AQ8NAV1 312 aaKnown RBP15.69■□□□□ 0.1
HDAC3-213ENST00000492506 SLC43A3Q8NBI5 491 aa15.69■□□□□ 0.1
HDAC3-213ENST00000492506 BOLA2Q9H3K6 86 aa15.69■□□□□ 0.1
HDAC3-213ENST00000492506 ABHD16BQ9H3Z7 469 aa15.69■□□□□ 0.1
HDAC3-213ENST00000492506 IL23AQ9NPF7 189 aa15.69■□□□□ 0.1
HDAC3-213ENST00000492506 BRPF3Q9ULD4 1205 aa15.69■□□□□ 0.1
HDAC3-213ENST00000492506 SLC4A4Q9Y6R1 1079 aa15.69■□□□□ 0.1
HDAC3-213ENST00000492506 ASTN1O14525 1302 aa15.68■□□□□ 0.1
HDAC3-213ENST00000492506 LCTP09848 1927 aa15.68■□□□□ 0.1
HDAC3-213ENST00000492506 APBB1O00213 710 aa15.68■□□□□ 0.1
HDAC3-213ENST00000492506 ATP5JP18859 108 aa15.68■□□□□ 0.1
HDAC3-213ENST00000492506 RASA1P20936 1047 aa15.68■□□□□ 0.1
HDAC3-213ENST00000492506 RAB30Q15771 203 aa15.68■□□□□ 0.1
HDAC3-213ENST00000492506 CCDC85BQ15834 202 aaPredicted RBP15.68■□□□□ 0.1
HDAC3-213ENST00000492506 SIRT2Q8IXJ6 389 aa15.68■□□□□ 0.1
HDAC3-213ENST00000492506 AMOTL1Q8IY63 956 aa15.68■□□□□ 0.1
HDAC3-213ENST00000492506 CPXCR1Q8N123 301 aa15.68■□□□□ 0.1
HDAC3-213ENST00000492506 HAUS7Q99871 368 aa15.68■□□□□ 0.1
HDAC3-213ENST00000492506 PUS7LQ9H0K6 701 aaKnown RBP15.68■□□□□ 0.1
HDAC3-213ENST00000492506 SLC38A10Q9HBR0 1119 aa15.68■□□□□ 0.1
HDAC3-213ENST00000492506 NYAP2Q9P242 653 aa15.68■□□□□ 0.1
HDAC3-213ENST00000492506 YBX2Q9Y2T7 364 aaKnown RBP15.68■□□□□ 0.1
HDAC3-213ENST00000492506 IGKV6D-41A0A0C4DH26 115 aa15.67■□□□□ 0.1
HDAC3-213ENST00000492506 ARMCX2Q7L311 632 aa15.67■□□□□ 0.1
HDAC3-213ENST00000492506 CCDC144CPQ8IYA2 1237 aa15.67■□□□□ 0.1
HDAC3-213ENST00000492506 PANK1Q8TE04 598 aa15.67■□□□□ 0.1
HDAC3-213ENST00000492506 VTI1AQ96AJ9 217 aa15.67■□□□□ 0.1
HDAC3-213ENST00000492506 VWCEQ96DN2 955 aa15.67■□□□□ 0.1
HDAC3-213ENST00000492506 UHRF1Q96T88 793 aaPredicted RBP15.67■□□□□ 0.1
HDAC3-213ENST00000492506 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.67■□□□□ 0.1
HDAC3-213ENST00000492506 NKX2-4Q9H2Z4 354 aa15.67■□□□□ 0.1
HDAC3-213ENST00000492506 SPC25Q9HBM1 224 aa15.67■□□□□ 0.1
HDAC3-213ENST00000492506 RAVER2Q9HCJ3 691 aaKnown RBP15.67■□□□□ 0.1
HDAC3-213ENST00000492506 MSRAQ9UJ68 235 aa15.67■□□□□ 0.1
HDAC3-213ENST00000492506 PRRC2BQ5JSZ5 2229 aaKnown RBP15.67■□□□□ 0.1
HDAC3-213ENST00000492506 GRIN2DO15399 1336 aa15.67■□□□□ 0.1
HDAC3-213ENST00000492506 UMODL1Q5DID0 1318 aa15.67■□□□□ 0.1
HDAC3-213ENST00000492506 SCN5AQ14524 2016 aa15.67■□□□□ 0.1
HDAC3-213ENST00000492506 TLR3O15455 904 aaKnown RBP15.66■□□□□ 0.1
HDAC3-213ENST00000492506 IGFBP4P22692 258 aa15.66■□□□□ 0.1
HDAC3-213ENST00000492506 BEX3Q00994 111 aa15.66■□□□□ 0.1
HDAC3-213ENST00000492506 SBK1Q52WX2 424 aa15.66■□□□□ 0.1
HDAC3-213ENST00000492506 BACH2Q9BYV9 841 aa15.66■□□□□ 0.1
HDAC3-213ENST00000492506 ARPP21Q9UBL0 812 aaPredicted RBP15.66■□□□□ 0.1
HDAC3-213ENST00000492506 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.65■□□□□ 0.1
HDAC3-213ENST00000492506 ZBED4O75132 1171 aa15.65■□□□□ 0.1
HDAC3-213ENST00000492506 FGBP02675 491 aa15.65■□□□□ 0.1
HDAC3-213ENST00000492506 BMP1P13497 986 aa15.65■□□□□ 0.1
HDAC3-213ENST00000492506 PLA2G5P39877 138 aa15.65■□□□□ 0.1
HDAC3-213ENST00000492506 SLC4A3P48751 1232 aa15.65■□□□□ 0.1
HDAC3-213ENST00000492506 CNTN2Q02246 1040 aa15.65■□□□□ 0.1
HDAC3-213ENST00000492506 CXCL17Q6UXB2 119 aa15.65■□□□□ 0.1
HDAC3-213ENST00000492506 ANKRD35Q8N283 1001 aa15.65■□□□□ 0.1
HDAC3-213ENST00000492506 FAM133AQ8N9E0 248 aa15.65■□□□□ 0.1
HDAC3-213ENST00000492506 CHST13Q8NET6 341 aa15.65■□□□□ 0.1
HDAC3-213ENST00000492506 MKL1Q969V6 931 aa15.65■□□□□ 0.1
HDAC3-213ENST00000492506 STRBPQ96SI9 672 aaKnown RBP15.65■□□□□ 0.1
HDAC3-213ENST00000492506 SLC28A3Q9HAS3 691 aa15.65■□□□□ 0.1
HDAC3-213ENST00000492506 GNEQ9Y223 722 aaKnown RBP15.65■□□□□ 0.1
HDAC3-213ENST00000492506 GSG1L2A8MUP6 293 aa15.64■□□□□ 0.09
HDAC3-213ENST00000492506 PTGS1P23219 599 aa15.64■□□□□ 0.09
HDAC3-213ENST00000492506 OAZ1P54368 228 aa15.64■□□□□ 0.09
HDAC3-213ENST00000492506 OTOP2Q7RTS6 562 aa15.64■□□□□ 0.09
HDAC3-213ENST00000492506 RPAP2Q8IXW5 612 aaPredicted RBP15.64■□□□□ 0.09
HDAC3-213ENST00000492506 KIFC2Q96AC6 838 aa15.64■□□□□ 0.09
HDAC3-213ENST00000492506 NECAB3Q96P71 396 aaPredicted RBP15.64■□□□□ 0.09
HDAC3-213ENST00000492506 NOC4LQ9BVI4 516 aaKnown RBP15.64■□□□□ 0.09
HDAC3-213ENST00000492506 WNT8AQ9H1J5 351 aa15.64■□□□□ 0.09
HDAC3-213ENST00000492506 HIPK3Q9H422 1215 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms