RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 PTGS1P23219 599 aa6.74□□□□□ -1.33
VPS41-214ENST00000490924 NCBP1Q09161 790 aaKnown RBP6.74□□□□□ -1.33
VPS41-214ENST00000490924 COPS6Q7L5N1 327 aa6.74□□□□□ -1.33
VPS41-214ENST00000490924 TTC5Q8N0Z6 440 aa6.74□□□□□ -1.33
VPS41-214ENST00000490924 ZNF397Q8NF99 534 aaPredicted RBP6.74□□□□□ -1.33
VPS41-214ENST00000490924 KIF18AQ8NI77 898 aa6.74□□□□□ -1.33
VPS41-214ENST00000490924 C2orf49Q9BVC5 232 aaPredicted RBP6.74□□□□□ -1.33
VPS41-214ENST00000490924 CCDC8Q9H0W5 538 aaPredicted RBP6.74□□□□□ -1.33
VPS41-214ENST00000490924 C19orf44Q9H6X5 657 aa6.74□□□□□ -1.33
VPS41-214ENST00000490924 C11orf16Q9NQ32 467 aa6.74□□□□□ -1.33
VPS41-214ENST00000490924 PAG1Q9NWQ8 432 aa6.74□□□□□ -1.33
VPS41-214ENST00000490924 FAM53CQ9NYF3 392 aa6.74□□□□□ -1.33
VPS41-214ENST00000490924 TLR7Q9NYK1 1049 aaKnown RBP6.74□□□□□ -1.33
VPS41-214ENST00000490924 DDX41Q9UJV9 622 aaKnown RBP6.74□□□□□ -1.33
VPS41-214ENST00000490924 KIAA1024Q9UPX6 916 aa6.74□□□□□ -1.33
VPS41-214ENST00000490924 TNS2Q63HR2 1409 aa6.74□□□□□ -1.33
VPS41-214ENST00000490924 COL18A1P39060 1754 aa6.73□□□□□ -1.33
VPS41-214ENST00000490924 EYA2O00167 538 aa6.73□□□□□ -1.33
VPS41-214ENST00000490924 CBFA2T2O43439 604 aa6.73□□□□□ -1.33
VPS41-214ENST00000490924 PPP6R2O75170 966 aa6.73□□□□□ -1.33
VPS41-214ENST00000490924 MAP3K6O95382 1288 aa6.73□□□□□ -1.33
VPS41-214ENST00000490924 RARAP10276 462 aa6.73□□□□□ -1.33
VPS41-214ENST00000490924 CMA1P23946 247 aa6.73□□□□□ -1.33
VPS41-214ENST00000490924 PDIA3P30101 505 aaKnown RBP6.73□□□□□ -1.33
VPS41-214ENST00000490924 TXKP42681 527 aa6.73□□□□□ -1.33
VPS41-214ENST00000490924 ARSDP51689 593 aa6.73□□□□□ -1.33
VPS41-214ENST00000490924 TFCP2Q12800 502 aa6.73□□□□□ -1.33
VPS41-214ENST00000490924 PTPN14Q15678 1187 aa6.73□□□□□ -1.33
VPS41-214ENST00000490924 CEP135Q66GS9 1140 aa6.73□□□□□ -1.33
VPS41-214ENST00000490924 ATG9AQ7Z3C6 839 aa6.73□□□□□ -1.33
VPS41-214ENST00000490924 KRT25Q7Z3Z0 450 aa6.73□□□□□ -1.33
VPS41-214ENST00000490924 FERMT3Q86UX7 667 aa6.73□□□□□ -1.33
VPS41-214ENST00000490924 CCAR1Q8IX12 1150 aaKnown RBP6.73□□□□□ -1.33
VPS41-214ENST00000490924 DHX40Q8IX18 779 aaKnown RBP6.73□□□□□ -1.33
VPS41-214ENST00000490924 DRC7Q8IY82 874 aa6.73□□□□□ -1.33
VPS41-214ENST00000490924 CCAR2Q8N163 923 aaKnown RBP6.73□□□□□ -1.33
VPS41-214ENST00000490924 LINC00301Q8NCQ3 95 aa6.73□□□□□ -1.33
VPS41-214ENST00000490924 FBXO18Q8NFZ0 1043 aa6.73□□□□□ -1.33
VPS41-214ENST00000490924 CACTINQ8WUQ7 758 aaKnown RBP6.73□□□□□ -1.33
VPS41-214ENST00000490924 ZNF496Q96IT1 587 aaPredicted RBP6.73□□□□□ -1.33
VPS41-214ENST00000490924 ZNF830Q96NB3 372 aaPredicted RBP6.73□□□□□ -1.33
VPS41-214ENST00000490924 MYD88Q99836 296 aa6.73□□□□□ -1.33
VPS41-214ENST00000490924 KRTAP9-2Q9BYQ4 174 aa6.73□□□□□ -1.33
VPS41-214ENST00000490924 DNAJC25Q9H1X3 360 aa6.73□□□□□ -1.33
VPS41-214ENST00000490924 CWC25Q9NXE8 425 aaPredicted RBP6.73□□□□□ -1.33
VPS41-214ENST00000490924 PHLPP2Q6ZVD8 1323 aa6.73□□□□□ -1.33
VPS41-214ENST00000490924 C5P01031 1676 aa6.72□□□□□ -1.33
VPS41-214ENST00000490924 E7EWF7 191 aa6.72□□□□□ -1.33
VPS41-214ENST00000490924 GSC2O15499 205 aa6.72□□□□□ -1.33
VPS41-214ENST00000490924 JAK2O60674 1132 aa6.72□□□□□ -1.33
VPS41-214ENST00000490924 CTDNEP1O95476 244 aa6.72□□□□□ -1.33
VPS41-214ENST00000490924 GHRHP01286 108 aa6.72□□□□□ -1.33
VPS41-214ENST00000490924 ANXA1P04083 346 aa6.72□□□□□ -1.33
VPS41-214ENST00000490924 HSPD1P10809 573 aaKnown RBP6.72□□□□□ -1.33
VPS41-214ENST00000490924 SKILP12757 684 aa6.72□□□□□ -1.33
VPS41-214ENST00000490924 HSP90B1P14625 803 aaKnown RBP6.72□□□□□ -1.33
VPS41-214ENST00000490924 EIF2AK2P19525 551 aaKnown RBP6.72□□□□□ -1.33
VPS41-214ENST00000490924 NT5C2P49902 561 aa6.72□□□□□ -1.33
VPS41-214ENST00000490924 CCZ1BP86790 482 aa6.72□□□□□ -1.33
VPS41-214ENST00000490924 CCZ1P86791 482 aaPredicted RBP6.72□□□□□ -1.33
VPS41-214ENST00000490924 FGD1P98174 961 aa6.72□□□□□ -1.33
VPS41-214ENST00000490924 FOXO4P98177 505 aa6.72□□□□□ -1.33
VPS41-214ENST00000490924 PPP2R5BQ15173 497 aa6.72□□□□□ -1.33
VPS41-214ENST00000490924 ZRSR1Q15695 479 aaKnown RBP6.72□□□□□ -1.33
VPS41-214ENST00000490924 TPD52L1Q16890 204 aaPredicted RBP6.72□□□□□ -1.33
VPS41-214ENST00000490924 IMMTQ16891 758 aaKnown RBP6.72□□□□□ -1.33
VPS41-214ENST00000490924 EPHA10Q5JZY3 1008 aa6.72□□□□□ -1.33
VPS41-214ENST00000490924 CPLX2Q6PUV4 134 aaKnown RBP6.72□□□□□ -1.33
VPS41-214ENST00000490924 CKAP2LQ8IYA6 745 aa6.72□□□□□ -1.33
VPS41-214ENST00000490924 MSL3Q8N5Y2 521 aaKnown RBP6.72□□□□□ -1.33
VPS41-214ENST00000490924 LRRC59Q96AG4 307 aaKnown RBP6.72□□□□□ -1.33
VPS41-214ENST00000490924 TEX13AQ9BXU3 409 aaPredicted RBP6.72□□□□□ -1.33
VPS41-214ENST00000490924 AKTIPQ9H8T0 292 aa6.72□□□□□ -1.33
VPS41-214ENST00000490924 TUBE1Q9UJT0 475 aa6.72□□□□□ -1.33
VPS41-214ENST00000490924 STK36Q9NRP7 1315 aa6.72□□□□□ -1.33
VPS41-214ENST00000490924 PAPPAQ13219 1627 aa6.72□□□□□ -1.33
VPS41-214ENST00000490924 UBR2Q8IWV8 1755 aa6.72□□□□□ -1.33
VPS41-214ENST00000490924 ARFGEF2Q9Y6D5 1785 aa6.72□□□□□ -1.33
VPS41-214ENST00000490924 MEGF6O75095 1541 aa6.71□□□□□ -1.33
VPS41-214ENST00000490924 DDX60Q8IY21 1712 aaKnown RBP6.71□□□□□ -1.34
VPS41-214ENST00000490924 TNS3Q68CZ2 1445 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 A0A087WZG4 1122 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 FAM177BA6PVY3 158 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 SPTLC2O15270 562 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 IGSF3O75054 1194 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 SLU7O95391 586 aaKnown RBP6.71□□□□□ -1.34
VPS41-214ENST00000490924 PSAPP07602 524 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 SFPQP23246 707 aaKnown RBP eCLIP6.71□□□□□ -1.34
VPS41-214ENST00000490924 ME1P48163 572 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 IDH3AP50213 366 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 NLRP12P59046 1061 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 TUBB2AQ13885 445 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 SLC39A14Q15043 492 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 TTF1Q15361 905 aaPredicted RBP6.71□□□□□ -1.34
VPS41-214ENST00000490924 ALX1Q15699 326 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 CAMK4Q16566 473 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 STOX1Q6ZVD7 989 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 UBE3BQ7Z3V4 1068 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 KRT28Q7Z3Y7 464 aa6.71□□□□□ -1.34
VPS41-214ENST00000490924 C14orf37Q86TY3 774 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms