RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 TMEM240Q5SV17 173 aa9.87□□□□□ -0.83
USP39-216ENST00000490193 CCDC174Q6PII3 467 aa9.87□□□□□ -0.83
USP39-216ENST00000490193 ZNF710Q8N1W2 664 aa9.87□□□□□ -0.83
USP39-216ENST00000490193 ATXN2LQ8WWM7 1075 aaKnown RBP9.87□□□□□ -0.83
USP39-216ENST00000490193 LENG1Q96BZ8 264 aaPredicted RBP9.87□□□□□ -0.83
USP39-216ENST00000490193 TEX13BQ9BXU2 312 aa9.87□□□□□ -0.83
USP39-216ENST00000490193 UPF3AQ9H1J1 476 aaKnown RBP9.87□□□□□ -0.83
USP39-216ENST00000490193 GOPCQ9HD26 462 aa9.87□□□□□ -0.83
USP39-216ENST00000490193 IL1RAPL2Q9NP60 686 aa9.87□□□□□ -0.83
USP39-216ENST00000490193 FAM184BQ9ULE4 1060 aa9.87□□□□□ -0.83
USP39-216ENST00000490193 REV3LO60673 3130 aa9.87□□□□□ -0.83
USP39-216ENST00000490193 MYH4Q9Y623 1939 aa9.87□□□□□ -0.83
USP39-216ENST00000490193 TRANK1O15050 2925 aa9.87□□□□□ -0.83
USP39-216ENST00000490193 LRRC37A2A6NM11 1700 aa9.86□□□□□ -0.83
USP39-216ENST00000490193 USP17L12C9JPN9 530 aa9.86□□□□□ -0.83
USP39-216ENST00000490193 USP17L21D6R901 530 aa9.86□□□□□ -0.83
USP39-216ENST00000490193 SMIM22K7EJ46 135 aa9.86□□□□□ -0.83
USP39-216ENST00000490193 PRKAB2O43741 272 aa9.86□□□□□ -0.83
USP39-216ENST00000490193 MBD4O95243 580 aa9.86□□□□□ -0.83
USP39-216ENST00000490193 NKX3-2P78367 333 aa9.86□□□□□ -0.83
USP39-216ENST00000490193 FAM83BQ5T0W9 1011 aa9.86□□□□□ -0.83
USP39-216ENST00000490193 C16orf59Q7L2K0 433 aa9.86□□□□□ -0.83
USP39-216ENST00000490193 AMOTL1Q8IY63 956 aa9.86□□□□□ -0.83
USP39-216ENST00000490193 CLASRPQ8N2M8 674 aaKnown RBP9.86□□□□□ -0.83
USP39-216ENST00000490193 PCSK9Q8NBP7 692 aaKnown RBP9.86□□□□□ -0.83
USP39-216ENST00000490193 FAM122AQ96E09 287 aa9.86□□□□□ -0.83
USP39-216ENST00000490193 KIF1BPQ96EK5 621 aa9.86□□□□□ -0.83
USP39-216ENST00000490193 GLT1D1Q96MS3 346 aa9.86□□□□□ -0.83
USP39-216ENST00000490193 GAS2L1Q99501 681 aaPredicted RBP9.86□□□□□ -0.83
USP39-216ENST00000490193 DNAJC2Q99543 621 aaKnown RBP9.86□□□□□ -0.83
USP39-216ENST00000490193 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.86□□□□□ -0.83
USP39-216ENST00000490193 PBX4Q9BYU1 374 aa9.86□□□□□ -0.83
USP39-216ENST00000490193 MYO9BQ13459 2157 aa9.85□□□□□ -0.83
USP39-216ENST00000490193 CYP2D7A0A087X1C5 515 aa9.85□□□□□ -0.83
USP39-216ENST00000490193 MYADML2A6NDP7 307 aa9.85□□□□□ -0.83
USP39-216ENST00000490193 ASGR1P07306 291 aa9.85□□□□□ -0.83
USP39-216ENST00000490193 GJA9P57773 515 aa9.85□□□□□ -0.83
USP39-216ENST00000490193 ACVR2BQ13705 512 aa9.85□□□□□ -0.83
USP39-216ENST00000490193 UBE3CQ15386 1083 aa9.85□□□□□ -0.83
USP39-216ENST00000490193 PSRC1Q6PGN9 363 aaPredicted RBP9.85□□□□□ -0.83
USP39-216ENST00000490193 FAM126BQ8IXS8 530 aa9.85□□□□□ -0.83
USP39-216ENST00000490193 TMEM199Q8N511 208 aa9.85□□□□□ -0.83
USP39-216ENST00000490193 SLF1Q9BQI6 1058 aa9.85□□□□□ -0.83
USP39-216ENST00000490193 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.85□□□□□ -0.83
USP39-216ENST00000490193 ABHD16BQ9H3Z7 469 aa9.85□□□□□ -0.83
USP39-216ENST00000490193 PAG1Q9NWQ8 432 aa9.85□□□□□ -0.83
USP39-216ENST00000490193 THEGQ9P2T0 379 aa9.85□□□□□ -0.83
USP39-216ENST00000490193 A0A0U1RQG5 324 aaPredicted RBP9.84□□□□□ -0.83
USP39-216ENST00000490193 ARVCFO00192 962 aa9.84□□□□□ -0.83
USP39-216ENST00000490193 ADCY6O43306 1168 aa9.84□□□□□ -0.83
USP39-216ENST00000490193 CD4P01730 458 aa9.84□□□□□ -0.83
USP39-216ENST00000490193 IFIT2P09913 472 aaKnown RBP9.84□□□□□ -0.83
USP39-216ENST00000490193 CSF2RAP15509 400 aa9.84□□□□□ -0.83
USP39-216ENST00000490193 ATP5JP18859 108 aa9.84□□□□□ -0.83
USP39-216ENST00000490193 PBX2P40425 430 aa9.84□□□□□ -0.83
USP39-216ENST00000490193 RAB30Q15771 203 aa9.84□□□□□ -0.83
USP39-216ENST00000490193 SNRNP48Q6IEG0 339 aaKnown RBP9.84□□□□□ -0.83
USP39-216ENST00000490193 CTR9Q6PD62 1173 aa9.84□□□□□ -0.83
USP39-216ENST00000490193 PRPF38AQ8NAV1 312 aaKnown RBP9.84□□□□□ -0.83
USP39-216ENST00000490193 RNF166Q96A37 237 aaPredicted RBP9.84□□□□□ -0.83
USP39-216ENST00000490193 DDX11Q96FC9 970 aa9.84□□□□□ -0.83
USP39-216ENST00000490193 DDRGK1Q96HY6 314 aa9.84□□□□□ -0.83
USP39-216ENST00000490193 FGD4Q96M96 766 aa9.84□□□□□ -0.83
USP39-216ENST00000490193 ASB2Q96Q27 587 aa9.84□□□□□ -0.83
USP39-216ENST00000490193 PRDM12Q9H4Q4 367 aa9.84□□□□□ -0.83
USP39-216ENST00000490193 SPC25Q9HBM1 224 aa9.84□□□□□ -0.83
USP39-216ENST00000490193 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.84□□□□□ -0.83
USP39-216ENST00000490193 NYAP2Q9P242 653 aa9.84□□□□□ -0.83
USP39-216ENST00000490193 ARPP21Q9UBL0 812 aaPredicted RBP9.84□□□□□ -0.83
USP39-216ENST00000490193 ZHX1Q9UKY1 873 aaPredicted RBP9.84□□□□□ -0.83
USP39-216ENST00000490193 RIPK3Q9Y572 518 aa9.84□□□□□ -0.83
USP39-216ENST00000490193 XIRP2A4UGR9 3374 aa9.84□□□□□ -0.83
USP39-216ENST00000490193 GRXCR1A8MXD5 290 aa9.83□□□□□ -0.84
USP39-216ENST00000490193 F5H6K3 240 aa9.83□□□□□ -0.84
USP39-216ENST00000490193 CTAGE5O15320 804 aa9.83□□□□□ -0.84
USP39-216ENST00000490193 TLR3O15455 904 aaKnown RBP9.83□□□□□ -0.84
USP39-216ENST00000490193 NDUFB10O96000 172 aa9.83□□□□□ -0.84
USP39-216ENST00000490193 C6orf222P0C671 652 aaPredicted RBP9.83□□□□□ -0.84
USP39-216ENST00000490193 RASA1P20936 1047 aa9.83□□□□□ -0.84
USP39-216ENST00000490193 KLRC3Q07444 240 aa9.83□□□□□ -0.84
USP39-216ENST00000490193 ADGRE1Q14246 886 aa9.83□□□□□ -0.84
USP39-216ENST00000490193 CCDC144BQ3MJ40 725 aa9.83□□□□□ -0.84
USP39-216ENST00000490193 SLFNL1Q499Z3 407 aa9.83□□□□□ -0.84
USP39-216ENST00000490193 SBK1Q52WX2 424 aa9.83□□□□□ -0.84
USP39-216ENST00000490193 ZNF365Q70YC5 407 aa9.83□□□□□ -0.84
USP39-216ENST00000490193 RPAP2Q8IXW5 612 aaPredicted RBP9.83□□□□□ -0.84
USP39-216ENST00000490193 SLC43A3Q8NBI5 491 aa9.83□□□□□ -0.84
USP39-216ENST00000490193 HERVK_113Q902F9 699 aa9.83□□□□□ -0.84
USP39-216ENST00000490193 HAUS7Q99871 368 aa9.83□□□□□ -0.84
USP39-216ENST00000490193 SEZ6LQ9BYH1 1024 aa9.83□□□□□ -0.84
USP39-216ENST00000490193 KATNBL1Q9H079 304 aa9.83□□□□□ -0.84
USP39-216ENST00000490193 SLC38A10Q9HBR0 1119 aa9.83□□□□□ -0.84
USP39-216ENST00000490193 IL23AQ9NPF7 189 aa9.83□□□□□ -0.84
USP39-216ENST00000490193 FBXO40Q9UH90 709 aa9.83□□□□□ -0.84
USP39-216ENST00000490193 SYNPO2Q9UMS6 1093 aa9.83□□□□□ -0.84
USP39-216ENST00000490193 IGKV6D-41A0A0C4DH26 115 aa9.82□□□□□ -0.84
USP39-216ENST00000490193 ZBED4O75132 1171 aa9.82□□□□□ -0.84
USP39-216ENST00000490193 RAB11FIP3O75154 756 aa9.82□□□□□ -0.84
USP39-216ENST00000490193 VASPP50552 380 aaPredicted RBP9.82□□□□□ -0.84
USP39-216ENST00000490193 OAZ1P54368 228 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms