RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 ZYXQ15942 572 aaKnown RBP13.18□□□□□ -0.3
C9orf3-220ENST00000489318 LDLRAD1Q5T700 205 aa13.18□□□□□ -0.3
C9orf3-220ENST00000489318 ANO1Q5XXA6 986 aa13.18□□□□□ -0.3
C9orf3-220ENST00000489318 LINC00301Q8NCQ3 95 aa13.18□□□□□ -0.3
C9orf3-220ENST00000489318 RBM46Q8TBY0 533 aaKnown RBP13.18□□□□□ -0.3
C9orf3-220ENST00000489318 BICD2Q8TD16 824 aa13.18□□□□□ -0.3
C9orf3-220ENST00000489318 AMNQ9BXJ7 453 aa13.18□□□□□ -0.3
C9orf3-220ENST00000489318 FTOQ9C0B1 505 aaKnown RBP eCLIP13.18□□□□□ -0.3
C9orf3-220ENST00000489318 RRAGCQ9HB90 399 aa13.18□□□□□ -0.3
C9orf3-220ENST00000489318 PCDHA6Q9UN73 950 aa13.18□□□□□ -0.3
C9orf3-220ENST00000489318 PCDHA8Q9Y5H6 950 aa13.18□□□□□ -0.3
C9orf3-220ENST00000489318 ZHX2Q9Y6X8 837 aa13.18□□□□□ -0.3
C9orf3-220ENST00000489318 SMCO2A6NFE2 343 aa13.17□□□□□ -0.3
C9orf3-220ENST00000489318 ADAMTS3O15072 1205 aa13.17□□□□□ -0.3
C9orf3-220ENST00000489318 TRAK2O60296 914 aa13.17□□□□□ -0.3
C9orf3-220ENST00000489318 CLK2P49760 499 aaKnown RBP13.17□□□□□ -0.3
C9orf3-220ENST00000489318 FKBP1BP68106 108 aa13.17□□□□□ -0.3
C9orf3-220ENST00000489318 PPATQ06203 517 aa13.17□□□□□ -0.3
C9orf3-220ENST00000489318 TRAF1Q13077 416 aa13.17□□□□□ -0.3
C9orf3-220ENST00000489318 EARS2Q5JPH6 523 aaKnown RBP13.17□□□□□ -0.3
C9orf3-220ENST00000489318 MAP1SQ66K74 1059 aaPredicted RBP13.17□□□□□ -0.3
C9orf3-220ENST00000489318 GPT2Q8TD30 523 aa13.17□□□□□ -0.3
C9orf3-220ENST00000489318 KCNG4Q8TDN1 519 aa13.17□□□□□ -0.3
C9orf3-220ENST00000489318 COA7Q96BR5 231 aa13.17□□□□□ -0.3
C9orf3-220ENST00000489318 SLF1Q9BQI6 1058 aa13.17□□□□□ -0.3
C9orf3-220ENST00000489318 GLT8D2Q9H1C3 349 aa13.17□□□□□ -0.3
C9orf3-220ENST00000489318 RIC8AQ9NPQ8 531 aa13.17□□□□□ -0.3
C9orf3-220ENST00000489318 TFIP11Q9UBB9 837 aaKnown RBP13.17□□□□□ -0.3
C9orf3-220ENST00000489318 ISY1Q9ULR0 285 aaKnown RBP13.17□□□□□ -0.3
C9orf3-220ENST00000489318 MYH7BA7E2Y1 1941 aa13.17□□□□□ -0.3
C9orf3-220ENST00000489318 MYPNQ86TC9 1320 aa13.16□□□□□ -0.3
C9orf3-220ENST00000489318 FAM205CA6NFA0 338 aa13.16□□□□□ -0.3
C9orf3-220ENST00000489318 TRIM75PA6NK02 468 aa13.16□□□□□ -0.3
C9orf3-220ENST00000489318 PPP6R2O75170 966 aa13.16□□□□□ -0.3
C9orf3-220ENST00000489318 GADD45BO75293 160 aaPredicted RBP13.16□□□□□ -0.3
C9orf3-220ENST00000489318 FDX1P10109 184 aa13.16□□□□□ -0.3
C9orf3-220ENST00000489318 ADCY7P51828 1080 aa13.16□□□□□ -0.3
C9orf3-220ENST00000489318 IKQ13123 557 aaPredicted RBP13.16□□□□□ -0.3
C9orf3-220ENST00000489318 DGKZQ13574 1117 aa13.16□□□□□ -0.3
C9orf3-220ENST00000489318 PRKG1Q13976 671 aa13.16□□□□□ -0.3
C9orf3-220ENST00000489318 SLC39A14Q15043 492 aa13.16□□□□□ -0.3
C9orf3-220ENST00000489318 SF3A1Q15459 793 aaKnown RBP13.16□□□□□ -0.3
C9orf3-220ENST00000489318 ARMC9Q7Z3E5 817 aa13.16□□□□□ -0.3
C9orf3-220ENST00000489318 KRT25Q7Z3Z0 450 aa13.16□□□□□ -0.3
C9orf3-220ENST00000489318 FBXO11Q86XK2 927 aa13.16□□□□□ -0.3
C9orf3-220ENST00000489318 ERO1BQ86YB8 467 aa13.16□□□□□ -0.3
C9orf3-220ENST00000489318 REXO1Q8N1G1 1221 aaKnown RBP13.16□□□□□ -0.3
C9orf3-220ENST00000489318 PRPF38AQ8NAV1 312 aaKnown RBP13.16□□□□□ -0.3
C9orf3-220ENST00000489318 NMRK2Q9NPI5 230 aa13.16□□□□□ -0.3
C9orf3-220ENST00000489318 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.16□□□□□ -0.3
C9orf3-220ENST00000489318 PPP1R9AQ9ULJ8 1098 aa13.16□□□□□ -0.3
C9orf3-220ENST00000489318 NOL7Q9UMY1 257 aaKnown RBP13.16□□□□□ -0.3
C9orf3-220ENST00000489318 KCNH4Q9UQ05 1017 aa13.16□□□□□ -0.3
C9orf3-220ENST00000489318 CLIC4Q9Y696 253 aa13.16□□□□□ -0.3
C9orf3-220ENST00000489318 SMCHD1A6NHR9 2005 aa13.15□□□□□ -0.3
C9orf3-220ENST00000489318 A0A0G2JLL6 359 aaPredicted RBP13.15□□□□□ -0.3
C9orf3-220ENST00000489318 BMP15O95972 392 aa13.15□□□□□ -0.3
C9orf3-220ENST00000489318 HMGCS2P54868 508 aa13.15□□□□□ -0.3
C9orf3-220ENST00000489318 PPIL2Q13356 520 aa13.15□□□□□ -0.3
C9orf3-220ENST00000489318 NOM1Q5C9Z4 860 aaKnown RBP13.15□□□□□ -0.3
C9orf3-220ENST00000489318 PRRT2Q7Z6L0 340 aaPredicted RBP13.15□□□□□ -0.3
C9orf3-220ENST00000489318 PROCA1Q8NCQ7 364 aaPredicted RBP13.15□□□□□ -0.3
C9orf3-220ENST00000489318 CUL5Q93034 780 aa13.15□□□□□ -0.3
C9orf3-220ENST00000489318 PGBD1Q96JS3 809 aa13.15□□□□□ -0.3
C9orf3-220ENST00000489318 ANP32EQ9BTT0 268 aa13.15□□□□□ -0.3
C9orf3-220ENST00000489318 RPAP3Q9H6T3 665 aaPredicted RBP13.15□□□□□ -0.3
C9orf3-220ENST00000489318 SLC38A10Q9HBR0 1119 aa13.15□□□□□ -0.3
C9orf3-220ENST00000489318 FBXO28Q9NVF7 368 aa13.15□□□□□ -0.3
C9orf3-220ENST00000489318 PNMA2Q9UL42 364 aa13.15□□□□□ -0.3
C9orf3-220ENST00000489318 ADAMTS5Q9UNA0 930 aa13.15□□□□□ -0.3
C9orf3-220ENST00000489318 CLEC11AQ9Y240 323 aa13.15□□□□□ -0.3
C9orf3-220ENST00000489318 PCDHA1Q9Y5I3 950 aa13.15□□□□□ -0.3
C9orf3-220ENST00000489318 DDX49Q9Y6V7 483 aaKnown RBP13.15□□□□□ -0.3
C9orf3-220ENST00000489318 ZNF536O15090 1300 aa13.14□□□□□ -0.31
C9orf3-220ENST00000489318 CCDC194A0A1B0GVG4 234 aa13.14□□□□□ -0.31
C9orf3-220ENST00000489318 A0A1W2PQ27 194 aa13.14□□□□□ -0.31
C9orf3-220ENST00000489318 A0A1W2PQ64 194 aa13.14□□□□□ -0.31
C9orf3-220ENST00000489318 A0A1W2PQD8 194 aa13.14□□□□□ -0.31
C9orf3-220ENST00000489318 TRAF5O00463 557 aa13.14□□□□□ -0.31
C9orf3-220ENST00000489318 CXCL11O14625 94 aa13.14□□□□□ -0.31
C9orf3-220ENST00000489318 OPLAHO14841 1288 aa13.14□□□□□ -0.31
C9orf3-220ENST00000489318 SPTLC2O15270 562 aa13.14□□□□□ -0.31
C9orf3-220ENST00000489318 ICAM1P05362 532 aa13.14□□□□□ -0.31
C9orf3-220ENST00000489318 GHRHRQ02643 423 aa13.14□□□□□ -0.31
C9orf3-220ENST00000489318 ORC2Q13416 577 aaPredicted RBP13.14□□□□□ -0.31
C9orf3-220ENST00000489318 STK38Q15208 465 aa13.14□□□□□ -0.31
C9orf3-220ENST00000489318 MCTP2Q6DN12 878 aa13.14□□□□□ -0.31
C9orf3-220ENST00000489318 PIK3AP1Q6ZUJ8 805 aa13.14□□□□□ -0.31
C9orf3-220ENST00000489318 RASGRP4Q8TDF6 673 aa13.14□□□□□ -0.31
C9orf3-220ENST00000489318 KIFC2Q96AC6 838 aa13.14□□□□□ -0.31
C9orf3-220ENST00000489318 TANGO6Q9C0B7 1094 aa13.14□□□□□ -0.31
C9orf3-220ENST00000489318 ELP3Q9H9T3 547 aa13.14□□□□□ -0.31
C9orf3-220ENST00000489318 TMOD4Q9NZQ9 345 aa13.14□□□□□ -0.31
C9orf3-220ENST00000489318 PCDHB6Q9Y5E3 794 aa13.14□□□□□ -0.31
C9orf3-220ENST00000489318 ABCB11O95342 1321 aa13.13□□□□□ -0.31
C9orf3-220ENST00000489318 PIK3CDO00329 1044 aa13.13□□□□□ -0.31
C9orf3-220ENST00000489318 WNT7AO00755 349 aa13.13□□□□□ -0.31
C9orf3-220ENST00000489318 FLOT1O75955 427 aa13.13□□□□□ -0.31
C9orf3-220ENST00000489318 MRPL12P52815 198 aaKnown RBP13.13□□□□□ -0.31
C9orf3-220ENST00000489318 OAZ1P54368 228 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms